Wall clock time and date at job start Tue Mar 31 2020 22:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00474 * 2 1 4 4 H 1.48493 * 109.47487 * 89.99423 * 3 2 1 5 5 H 1.48504 * 109.47265 * 210.00121 * 3 2 1 6 6 H 1.48503 * 109.46765 * 329.99627 * 3 2 1 7 7 C 1.38955 * 119.99646 * 180.27115 * 2 1 3 8 8 H 1.08003 * 119.99798 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99949 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00068 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00279 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00322 * 179.97438 * 10 9 7 13 13 N 1.46494 * 109.47369 * 179.97438 * 12 10 9 14 14 C 1.34785 * 120.00053 * 180.02562 * 13 12 10 15 15 O 1.21277 * 119.99642 * 359.97438 * 14 13 12 16 16 C 1.50694 * 119.99705 * 180.02562 * 14 13 12 17 17 H 1.08997 * 109.51437 * 33.34511 * 16 14 13 18 18 C 1.53105 * 109.50930 * 273.25559 * 16 14 13 19 19 O 1.43012 * 109.26207 * 183.21918 * 18 16 14 20 20 C 1.43023 * 113.73696 * 58.67047 * 19 18 16 21 21 C 1.53098 * 109.25796 * 301.33346 * 20 19 18 22 22 N 1.47012 * 109.29698 * 56.82661 * 21 20 19 23 23 C 1.46900 * 111.03677 * 177.65245 * 22 21 20 24 24 C 1.53000 * 109.46766 * 287.01285 * 23 22 21 25 25 F 1.39902 * 109.47362 * 65.85104 * 24 23 22 26 26 F 1.39900 * 109.47372 * 185.85063 * 24 23 22 27 27 F 1.39909 * 109.47237 * 305.85120 * 24 23 22 28 28 H 0.97004 * 119.99177 * 359.72976 * 1 2 3 29 29 H 0.97001 * 120.00220 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47422 * 300.00025 * 12 10 9 31 31 H 1.09002 * 109.46772 * 59.99652 * 12 10 9 32 32 H 0.96996 * 120.00391 * 359.97438 * 13 12 10 33 33 H 1.09003 * 109.50576 * 303.15790 * 18 16 14 34 34 H 1.09002 * 109.50068 * 63.28300 * 18 16 14 35 35 H 1.08996 * 109.50019 * 61.26448 * 20 19 18 36 36 H 1.09001 * 109.50493 * 181.39406 * 20 19 18 37 37 H 1.09001 * 109.49995 * 176.78372 * 21 20 19 38 38 H 1.09007 * 109.50483 * 296.86463 * 21 20 19 39 39 H 1.08996 * 109.47521 * 47.00910 * 23 22 21 40 40 H 1.08998 * 109.47156 * 167.01325 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4957 2.0464 1.4000 5 1 3.5458 1.4400 -0.7001 6 1 1.4457 2.6526 -0.7001 7 6 2.0088 -1.2034 -0.0057 8 1 1.4687 -2.1387 -0.0097 9 7 3.3798 -1.2035 -0.0052 10 6 4.0537 -2.3706 -0.0112 11 8 3.4472 -3.4211 -0.0167 12 6 5.5606 -2.3708 -0.0112 13 7 6.0489 -3.7520 -0.0177 14 6 7.3740 -3.9983 -0.0184 15 8 8.1621 -3.0766 -0.0140 16 6 7.8762 -5.4191 -0.0257 17 1 7.1886 -6.0454 -0.5941 18 6 7.9685 -5.9362 1.4124 19 8 8.5161 -7.2573 1.4045 20 6 9.8142 -7.3390 0.8098 21 6 9.7406 -6.8361 -0.6343 22 7 9.2088 -5.4656 -0.6450 23 6 9.1739 -4.9242 -2.0102 24 6 10.5979 -4.6014 -2.4673 25 9 11.3328 -5.7868 -2.5760 26 9 10.5550 -3.9635 -3.7116 27 9 11.2081 -3.7585 -1.5320 28 1 -0.4849 0.8401 0.0040 29 1 3.8649 -0.3635 -0.0012 30 1 5.9240 -1.8524 -0.8985 31 1 5.9240 -1.8615 0.8814 32 1 5.4186 -4.4892 -0.0209 33 1 8.6135 -5.2783 1.9950 34 1 6.9732 -5.9573 1.8562 35 1 10.5128 -6.7219 1.3749 36 1 10.1537 -8.3747 0.8178 37 1 10.7383 -6.8429 -1.0733 38 1 9.0840 -7.4860 -1.2130 39 1 8.7349 -5.6614 -2.6824 40 1 8.5726 -4.0152 -2.0253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343508106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:12 Heat of formation + Delta-G solvation = -273.975547 kcal Electronic energy + Delta-G solvation = -30432.456721 eV Core-core repulsion = 25445.976629 eV Total energy + Delta-G solvation = -4986.480092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.12473 -48.70354 -48.52725 -41.75740 -40.50518 -39.53089 -37.06328 -36.28074 -35.35976 -33.84092 -32.79532 -31.38337 -29.52241 -27.27112 -26.53585 -25.43732 -23.87532 -22.39540 -21.48752 -21.24352 -20.51418 -19.62859 -19.57695 -18.71312 -18.64890 -17.71323 -17.45982 -17.22227 -16.98952 -16.61775 -16.48612 -16.10496 -15.83004 -15.57364 -15.55304 -15.47964 -15.22335 -15.13591 -14.93559 -14.91414 -14.75722 -14.72753 -14.35313 -14.07338 -13.94329 -13.76479 -13.33100 -13.09277 -12.95858 -12.82338 -12.44619 -12.36193 -12.00868 -11.72993 -11.57818 -11.16303 -10.74404 -10.65503 -10.34242 -10.23197 -9.77222 -8.45692 -6.07646 1.30848 1.33679 1.35533 1.43675 1.57124 1.79287 1.80397 2.20292 2.26557 2.76505 2.78186 2.89577 3.00434 3.10910 3.34661 3.56066 3.60319 3.81724 3.86711 3.94021 4.00655 4.15905 4.21678 4.30348 4.40078 4.41377 4.55353 4.63601 4.76946 4.89188 5.16092 5.29612 5.47981 5.53736 5.88424 6.00310 6.40202 6.48341 6.78645 7.03792 7.29569 7.78121 8.70710 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.002717 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.259641 B =10303.321555 C =11431.856993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.958 3.042 4 H -0.257 1.257 5 H -0.232 1.232 6 H -0.275 1.275 7 C -0.331 4.331 8 H 0.064 0.936 9 N -0.578 5.578 10 C 0.445 3.555 11 O -0.613 6.613 12 C 0.118 3.882 13 N -0.704 5.704 14 C 0.519 3.481 15 O -0.547 6.547 16 C 0.044 3.956 17 H 0.097 0.903 18 C 0.080 3.920 19 O -0.385 6.385 20 C 0.059 3.941 21 C 0.000 4.000 22 N -0.524 5.524 23 C 0.007 3.993 24 C 0.464 3.536 25 F -0.180 7.180 26 F -0.186 7.186 27 F -0.181 7.181 28 H 0.281 0.719 29 H 0.392 0.608 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.415 0.585 33 H 0.063 0.937 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.129 0.871 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.035 -11.341 -2.468 26.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.155 1.155 6 H -0.200 1.200 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.218 5.218 10 C 0.232 3.768 11 O -0.499 6.499 12 C -0.009 4.009 13 N -0.359 5.359 14 C 0.304 3.696 15 O -0.424 6.424 16 C -0.068 4.068 17 H 0.115 0.885 18 C 0.002 3.998 19 O -0.303 6.303 20 C -0.018 4.018 21 C -0.126 4.126 22 N -0.250 5.250 23 C -0.123 4.123 24 C 0.409 3.591 25 F -0.161 7.161 26 F -0.168 7.168 27 F -0.162 7.162 28 H 0.090 0.910 29 H 0.228 0.772 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.253 0.747 33 H 0.082 0.918 34 H 0.137 0.863 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.131 0.869 38 H 0.084 0.916 39 H 0.127 0.873 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 24.229 -11.126 -2.119 26.746 hybrid contribution -0.736 0.709 -0.744 1.264 sum 23.493 -10.418 -2.862 25.858 Atomic orbital electron populations 1.69784 1.08065 1.29434 1.49327 1.26056 0.96391 1.02570 0.95750 0.85461 0.79599 0.77117 0.80045 1.18128 1.15504 1.20024 1.19030 0.81012 0.95235 1.50690 0.91758 1.41937 1.06108 1.07520 1.66247 1.20509 0.90086 0.83836 0.82327 1.90540 1.70779 1.32225 1.56370 1.20902 0.89494 0.85157 1.05380 1.45758 1.07199 1.08841 1.74150 1.20435 0.81521 0.91305 0.76312 1.90749 1.55597 1.46454 1.49603 1.22281 0.90757 0.93384 1.00363 0.88507 1.22564 1.01307 0.84367 0.91538 1.88047 1.33858 1.27578 1.80817 1.22913 0.84351 1.03622 0.90872 1.23404 1.03101 0.86318 0.99823 1.61677 1.23150 1.23362 1.16859 1.23314 0.91613 1.05060 0.92296 1.20412 0.89828 0.74268 0.74566 1.93089 1.80385 1.46982 1.95676 1.93186 1.96848 1.82702 1.44060 1.93212 1.85348 1.72045 1.65598 0.90951 0.77243 0.87634 0.87530 0.74650 0.91846 0.86275 0.92052 0.85293 0.86934 0.91590 0.87295 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.55 13.96 21.66 0.30 -53.25 16 2 C -0.01 -0.40 5.50 84.93 0.47 0.06 16 3 Si 0.96 37.12 27.74 68.60 1.90 39.02 16 4 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 6 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.33 -18.20 10.16 84.04 0.85 -17.35 16 8 H 0.06 4.20 7.39 -2.91 -0.02 4.17 16 9 N -0.58 -25.30 5.09 -306.98 -1.56 -26.86 16 10 C 0.44 18.01 7.85 87.66 0.69 18.70 16 11 O -0.61 -29.63 15.24 -3.08 -0.05 -29.68 16 12 C 0.12 3.41 6.15 85.63 0.53 3.94 16 13 N -0.70 -18.10 5.53 -466.81 -2.58 -20.68 16 14 C 0.52 12.49 5.78 87.65 0.51 13.00 16 15 O -0.55 -16.42 15.50 -3.02 -0.05 -16.46 16 16 C 0.04 0.81 2.38 44.18 0.11 0.91 16 17 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 18 C 0.08 1.42 6.27 72.02 0.45 1.87 16 19 O -0.38 -6.76 10.83 -148.98 -1.61 -8.38 16 20 C 0.06 0.76 7.01 72.01 0.50 1.27 16 21 C 0.00 0.00 5.33 86.31 0.46 0.46 16 22 N -0.52 -9.50 4.05 -874.37 -3.54 -13.04 16 23 C 0.01 0.12 4.74 86.30 0.41 0.53 16 24 C 0.46 9.01 3.25 71.98 0.23 9.24 16 25 F -0.18 -3.08 14.50 44.97 0.65 -2.42 16 26 F -0.19 -3.83 17.32 44.97 0.78 -3.05 16 27 F -0.18 -4.43 17.13 44.97 0.77 -3.66 16 28 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.39 14.32 5.76 -92.71 -0.53 13.79 16 30 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.42 10.72 7.44 -92.71 -0.69 10.03 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.13 1.02 8.14 -2.39 -0.02 1.01 16 37 H 0.11 1.39 5.45 -2.39 -0.01 1.38 16 38 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.11 1.32 8.04 -2.39 -0.02 1.30 16 40 H 0.11 2.31 5.91 -2.39 -0.01 2.30 16 Total: -1.00 -71.96 345.46 0.07 -71.88 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: -0.15 Total: 33.93 kcal Atomic # 6 Polarization: 27.43 SS G_CDS: 5.21 Total: 32.64 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -7.38 Total: -113.82 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -1.71 Total: -54.52 kcal Atomic # 9 Polarization: -11.34 SS G_CDS: 2.20 Total: -9.14 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 1.90 Total: 39.02 kcal Total: -71.96 0.07 -71.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343508106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.092 kcal (2) G-P(sol) polarization free energy of solvation -71.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds