Wall clock time and date at job start Tue Mar 31 2020 22:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00441 * 2 1 4 4 H 1.48496 * 109.47352 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47059 * 300.00198 * 3 2 1 6 6 H 1.48510 * 109.46894 * 59.99651 * 3 2 1 7 7 C 1.38959 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99748 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00216 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99518 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00284 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.46939 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99871 * 179.97438 * 13 12 10 15 15 O 1.21589 * 119.99873 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00146 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99691 * 179.97438 * 16 14 13 18 18 H 1.08998 * 115.55467 * 9.42939 * 17 16 14 19 19 C 1.53005 * 117.49901 * 223.74813 * 17 16 14 20 20 C 1.53003 * 117.49295 * 155.09271 * 17 16 14 21 21 H 1.08999 * 117.50013 * 214.98287 * 20 17 16 22 22 C 1.50705 * 117.50149 * 359.97438 * 20 17 16 23 23 C 1.38413 * 120.02801 * 233.09717 * 22 20 17 24 24 F 1.35099 * 120.01161 * 359.97320 * 23 22 20 25 25 C 1.38468 * 119.97404 * 179.70271 * 23 22 20 26 26 C 1.38212 * 120.02702 * 0.58868 * 25 23 22 27 27 C 1.38208 * 120.04718 * 359.68730 * 26 25 23 28 28 C 1.38423 * 120.01960 * 53.36914 * 22 20 17 29 29 F 1.35099 * 120.01405 * 359.97438 * 28 22 20 30 30 H 0.97003 * 119.99867 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99686 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.46737 * 60.00132 * 12 10 9 33 33 H 1.09002 * 109.47202 * 299.99771 * 12 10 9 34 34 H 0.96994 * 120.00127 * 0.27641 * 13 12 10 35 35 H 0.96996 * 119.99703 * 0.02562 * 16 14 13 36 36 H 1.09001 * 117.49762 * 0.02562 * 19 17 16 37 37 H 1.08997 * 117.49515 * 145.00018 * 19 17 16 38 38 H 1.08007 * 119.99130 * 180.27345 * 25 23 22 39 39 H 1.08000 * 119.97943 * 179.70000 * 26 25 23 40 40 H 1.08001 * 119.98773 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2035 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0016 11 8 3.2100 -3.5580 0.0021 12 6 1.2435 -4.8630 0.0022 13 7 2.1955 -5.9765 0.0027 14 6 1.7462 -7.2472 0.0038 15 8 0.5507 -7.4693 0.0039 16 7 2.6219 -8.2717 0.0037 17 6 2.1334 -9.6528 0.0054 18 1 1.0619 -9.7728 -0.1544 19 6 2.8232 -10.6450 0.9440 20 6 3.0578 -10.7297 -0.5662 21 1 2.5944 -11.5583 -1.1018 22 6 4.4008 -10.2884 -1.0885 23 6 4.7927 -10.6327 -2.3706 24 9 3.9715 -11.3651 -3.1544 25 6 6.0243 -10.2214 -2.8515 26 6 6.8674 -9.4776 -2.0476 27 6 6.4796 -9.1380 -0.7653 28 6 5.2458 -9.5431 -0.2843 29 9 4.8667 -9.2105 0.9690 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6172 -4.9212 -0.8880 33 1 0.6165 -4.9201 0.8920 34 1 3.1491 -5.7994 0.0066 35 1 3.5756 -8.0945 0.0032 36 1 3.6402 -10.2699 1.5605 37 1 2.2054 -11.4175 1.4018 38 1 6.3284 -10.4861 -3.8535 39 1 7.8298 -9.1613 -2.4218 40 1 7.1393 -8.5572 -0.1378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345017054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:35 Heat of formation + Delta-G solvation = -108.985466 kcal Electronic energy + Delta-G solvation = -28580.163834 eV Core-core repulsion = 24031.607474 eV Total energy + Delta-G solvation = -4548.556360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.52197 -50.04455 -41.38087 -40.32041 -39.85076 -38.26647 -36.24365 -35.31920 -34.09094 -33.35046 -31.68301 -31.32895 -29.15000 -26.44625 -25.07452 -23.97700 -23.39948 -22.42749 -21.62965 -21.35178 -20.20446 -19.79861 -19.19448 -18.49333 -17.87781 -17.48814 -17.01061 -16.89753 -16.82216 -16.63966 -16.53166 -16.41703 -15.98482 -15.70823 -15.65758 -15.51167 -15.34775 -14.97399 -14.13922 -14.07565 -13.96314 -13.77732 -13.54872 -13.34240 -13.07284 -12.92337 -12.87790 -12.49636 -12.44300 -12.10614 -11.84036 -11.75845 -11.57905 -11.51589 -10.56573 -10.41318 -10.10393 -9.97811 -9.83311 -9.51319 -8.50939 -6.01138 -0.14180 -0.08623 1.35412 1.41104 1.46520 1.58550 1.86904 1.95266 2.27198 2.28880 2.76476 2.92244 2.95968 3.16327 3.19783 3.26884 3.35886 3.53616 3.70972 3.82753 3.96169 4.17735 4.19468 4.27553 4.39966 4.44145 4.60313 4.71138 4.79951 4.88520 4.92390 5.02037 5.16768 5.18250 5.24236 5.38733 5.41137 5.71828 5.81551 5.92349 6.47826 6.87559 7.03478 7.38235 7.45789 7.93934 8.66276 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016517 B = 0.002385 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.824403 B =11739.184355 C =12518.626904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.141 3.859 13 N -0.723 5.723 14 C 0.708 3.292 15 O -0.625 6.625 16 N -0.708 5.708 17 C 0.099 3.901 18 H 0.137 0.863 19 C -0.190 4.190 20 C -0.128 4.128 21 H 0.138 0.862 22 C -0.131 4.131 23 C 0.113 3.887 24 F -0.137 7.137 25 C -0.152 4.152 26 C -0.059 4.059 27 C -0.153 4.153 28 C 0.092 3.908 29 F -0.126 7.126 30 H 0.280 0.720 31 H 0.399 0.601 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.408 0.592 35 H 0.401 0.599 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.167 0.833 39 H 0.180 0.820 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.368 -23.200 -3.030 26.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.511 6.511 12 C 0.013 3.987 13 N -0.380 5.380 14 C 0.408 3.592 15 O -0.506 6.506 16 N -0.364 5.364 17 C -0.008 4.008 18 H 0.155 0.845 19 C -0.227 4.227 20 C -0.147 4.147 21 H 0.156 0.844 22 C -0.133 4.133 23 C 0.094 3.906 24 F -0.115 7.115 25 C -0.171 4.171 26 C -0.077 4.077 27 C -0.172 4.172 28 C 0.073 3.927 29 F -0.105 7.105 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.246 0.754 35 H 0.240 0.760 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.184 0.816 39 H 0.197 0.803 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.881 -23.201 -3.016 26.240 hybrid contribution 0.071 0.880 0.109 0.890 sum 11.952 -22.321 -2.907 25.486 Atomic orbital electron populations 1.69691 1.07043 1.29588 1.49321 1.26146 0.96535 1.02710 0.95774 0.84802 0.78168 0.76664 0.78290 1.19326 1.19637 1.19668 1.19781 0.92978 0.83474 1.50308 0.89509 1.41830 1.09609 1.04555 1.63376 1.20359 0.88105 0.85838 0.83604 1.90465 1.15126 1.87522 1.58032 1.20631 0.90916 0.82956 1.04242 1.44675 1.11037 1.03221 1.79083 1.15843 0.85064 0.80705 0.77552 1.90869 1.15258 1.84579 1.59868 1.44571 1.09138 1.03986 1.78737 1.21582 0.97607 0.77030 1.04566 0.84549 1.24369 1.04873 1.01849 0.91654 1.21533 0.93076 1.01802 0.98333 0.84406 1.19203 0.96899 1.02826 0.94358 1.17371 0.90086 0.95217 0.87947 1.91502 1.71941 1.74669 1.73406 1.21617 0.92146 1.00216 1.03091 1.21323 1.00712 0.94114 0.91510 1.21630 0.94795 1.02227 0.98509 1.17490 0.95074 1.00086 0.80046 1.91286 1.90738 1.90224 1.38244 0.91064 0.76677 0.88875 0.88827 0.75444 0.76032 0.85407 0.85567 0.81563 0.80270 0.81780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.79 13.05 21.67 0.28 -48.50 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 1.00 41.65 29.55 68.60 2.03 43.67 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.34 -18.53 9.68 84.04 0.81 -17.72 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.20 5.29 -306.98 -1.62 -29.82 16 10 C 0.43 20.27 7.85 87.66 0.69 20.96 16 11 O -0.62 -32.36 15.24 -3.08 -0.05 -32.41 16 12 C 0.14 5.35 6.15 85.63 0.53 5.88 16 13 N -0.72 -25.46 5.53 -482.29 -2.67 -28.13 16 14 C 0.71 24.51 8.57 179.05 1.53 26.04 16 15 O -0.62 -25.21 15.91 -4.00 -0.06 -25.27 16 16 N -0.71 -19.50 5.06 -457.80 -2.32 -21.81 16 17 C 0.10 2.33 6.37 44.99 0.29 2.61 16 18 H 0.14 3.48 7.40 -2.39 -0.02 3.47 16 19 C -0.19 -3.40 9.64 30.62 0.30 -3.11 16 20 C -0.13 -2.42 5.86 -11.51 -0.07 -2.48 16 21 H 0.14 2.29 7.73 -2.39 -0.02 2.27 16 22 C -0.13 -2.45 5.35 -19.78 -0.11 -2.56 16 23 C 0.11 1.97 7.24 22.37 0.16 2.13 16 24 F -0.14 -2.65 16.53 44.97 0.74 -1.91 16 25 C -0.15 -1.81 10.02 22.32 0.22 -1.59 16 26 C -0.06 -0.55 10.04 22.26 0.22 -0.33 16 27 C -0.15 -1.93 10.02 22.32 0.22 -1.71 16 28 C 0.09 1.61 5.71 22.37 0.13 1.74 16 29 F -0.13 -2.45 11.36 44.97 0.51 -1.94 16 30 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 32 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 33 H 0.09 3.39 8.14 -2.39 -0.02 3.38 16 34 H 0.41 14.11 7.45 -92.71 -0.69 13.42 16 35 H 0.40 10.02 4.90 -92.71 -0.45 9.56 16 36 H 0.13 2.40 4.98 -2.39 -0.01 2.39 16 37 H 0.13 1.74 8.14 -2.39 -0.02 1.73 16 38 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 40 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -69.36 351.28 1.52 -67.84 By element: Atomic # 1 Polarization: 49.24 SS G_CDS: -0.72 Total: 48.52 kcal Atomic # 6 Polarization: 24.36 SS G_CDS: 5.40 Total: 29.76 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -6.32 Total: -128.27 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -0.11 Total: -57.68 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 1.25 Total: -3.85 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -69.36 1.52 -67.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345017054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.147 kcal (2) G-P(sol) polarization free energy of solvation -69.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds