Wall clock time and date at job start Tue Mar 31 2020 22:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99481 * 2 1 4 4 H 1.48501 * 109.47056 * 90.00060 * 3 2 1 5 5 H 1.48496 * 109.47324 * 330.00271 * 3 2 1 6 6 H 1.48498 * 109.47081 * 210.00241 * 3 2 1 7 7 C 1.38942 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99679 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00443 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00013 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00352 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99652 * 180.02562 * 10 9 7 13 13 N 1.46509 * 109.46871 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99760 * 179.97438 * 13 12 10 15 15 O 1.21590 * 120.00287 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99945 * 179.97438 * 14 13 12 17 17 C 1.46496 * 119.99955 * 179.97438 * 16 14 13 18 18 H 1.09002 * 115.55193 * 350.58703 * 17 16 14 19 19 C 1.53001 * 117.49601 * 136.25419 * 17 16 14 20 20 C 1.52998 * 117.50094 * 204.91501 * 17 16 14 21 21 H 1.08998 * 117.50191 * 144.99598 * 20 17 16 22 22 C 1.50710 * 117.49733 * 0.02562 * 20 17 16 23 23 C 1.38419 * 120.02129 * 306.49236 * 22 20 17 24 24 F 1.35097 * 120.01692 * 359.97438 * 23 22 20 25 25 C 1.38474 * 119.96948 * 179.74380 * 23 22 20 26 26 C 1.38205 * 120.02488 * 0.50717 * 25 23 22 27 27 C 1.38202 * 120.05271 * 359.77006 * 26 25 23 28 28 C 1.38413 * 120.02608 * 126.76667 * 22 20 17 29 29 F 1.35103 * 120.01242 * 359.97438 * 28 22 20 30 30 H 0.97010 * 119.99380 * 180.02562 * 1 2 3 31 31 H 0.97007 * 119.99591 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47167 * 299.99701 * 12 10 9 33 33 H 1.08998 * 109.47433 * 60.00312 * 12 10 9 34 34 H 0.96998 * 119.99851 * 359.97438 * 13 12 10 35 35 H 0.96998 * 119.99666 * 0.02562 * 16 14 13 36 36 H 1.08999 * 117.49857 * 214.97795 * 19 17 16 37 37 H 1.08999 * 117.49896 * 0.02562 * 19 17 16 38 38 H 1.08003 * 119.98780 * 180.23091 * 25 23 22 39 39 H 1.08003 * 119.97213 * 179.74781 * 26 25 23 40 40 H 1.08003 * 119.98778 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 1.4001 5 1 1.4454 2.6527 -0.7000 6 1 3.5455 1.4404 -0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3907 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1961 -5.9764 -0.0016 14 6 1.7469 -7.2471 -0.0017 15 8 0.5515 -7.4694 -0.0018 16 7 2.6228 -8.2715 -0.0026 17 6 2.1346 -9.6527 -0.0021 18 1 1.0633 -9.7726 0.1599 19 6 2.8225 -10.6454 -0.9413 20 6 3.0601 -10.7290 0.5685 21 1 2.5979 -11.5570 1.1060 22 6 4.4042 -10.2870 1.0877 23 6 5.2486 -9.5449 0.2801 24 9 4.8686 -9.2167 -0.9740 25 6 6.4811 -9.1348 0.7601 26 6 6.8725 -9.4753 2.0411 27 6 6.0326 -10.2211 2.8462 28 6 4.7975 -10.6278 2.3703 29 9 3.9764 -11.3565 3.1577 30 1 -0.4850 -0.8402 0.0004 31 1 0.3534 -2.3907 -0.0005 32 1 0.6170 -4.9209 0.8886 33 1 0.6177 -4.9205 -0.8914 34 1 3.1498 -5.7991 -0.0019 35 1 3.5764 -8.0941 -0.0029 36 1 2.2039 -11.4187 -1.3969 37 1 3.6386 -10.2710 -1.5593 38 1 7.1386 -8.5525 0.1315 39 1 7.8357 -9.1585 2.4131 40 1 6.3397 -10.4869 3.8469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345017056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:38 Heat of formation + Delta-G solvation = -86.387417 kcal Electronic energy + Delta-G solvation = -28618.235221 eV Core-core repulsion = 24070.658786 eV Total energy + Delta-G solvation = -4547.576435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.84238 -49.36976 -40.20114 -39.37104 -38.41228 -37.38541 -34.71304 -33.81782 -32.99332 -31.25185 -31.00514 -30.76781 -27.47287 -24.51887 -24.25802 -23.36838 -22.46677 -21.50387 -20.62856 -19.93252 -18.78872 -18.56100 -18.05648 -17.77977 -17.07167 -16.38740 -16.04572 -15.92637 -15.81096 -15.74691 -15.48614 -15.05959 -14.98552 -14.66536 -14.32290 -14.12083 -13.89458 -13.63605 -13.49013 -13.36243 -12.73635 -12.52396 -12.40997 -12.25404 -12.16400 -11.59789 -11.31146 -11.14688 -11.03521 -11.00488 -10.26749 -10.15284 -9.95997 -9.67566 -9.33577 -9.24456 -8.97290 -8.67926 -8.56739 -8.15896 -6.84849 -3.99386 0.44318 0.49715 2.62606 2.81362 3.18665 3.24512 3.30870 3.37612 3.50113 3.68458 3.73087 3.90607 3.95782 4.13678 4.17750 4.29620 4.31860 4.54501 4.64769 4.70385 4.74023 4.95469 5.17113 5.24108 5.35067 5.42717 5.51494 5.56471 5.59422 5.69609 5.76443 5.85520 5.88535 5.89265 6.27136 6.42582 6.63460 6.98966 7.67879 7.97230 8.11868 8.45679 8.63796 8.69948 9.34474 9.68442 10.58108 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016483 B = 0.002392 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.309764 B =11700.472380 C =12482.277081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.006 4.006 3 Si 1.095 2.905 4 H -0.283 1.283 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.386 4.386 8 H 0.102 0.898 9 N -0.561 5.561 10 C 0.431 3.569 11 O -0.591 6.591 12 C 0.128 3.872 13 N -0.723 5.723 14 C 0.710 3.290 15 O -0.594 6.594 16 N -0.720 5.720 17 C 0.129 3.871 18 H 0.148 0.852 19 C -0.206 4.206 20 C -0.140 4.140 21 H 0.129 0.871 22 C -0.112 4.112 23 C 0.110 3.890 24 F -0.118 7.118 25 C -0.152 4.152 26 C -0.068 4.068 27 C -0.155 4.155 28 C 0.132 3.868 29 F -0.127 7.127 30 H 0.264 0.736 31 H 0.380 0.620 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.406 0.594 35 H 0.395 0.605 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.365 -23.395 2.639 26.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.210 4.210 3 Si 0.921 3.079 4 H -0.210 1.210 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.515 4.515 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.217 3.783 11 O -0.477 6.477 12 C 0.000 4.000 13 N -0.380 5.380 14 C 0.410 3.590 15 O -0.473 6.473 16 N -0.376 5.376 17 C 0.021 3.979 18 H 0.165 0.835 19 C -0.244 4.244 20 C -0.160 4.160 21 H 0.147 0.853 22 C -0.114 4.114 23 C 0.090 3.910 24 F -0.096 7.096 25 C -0.171 4.171 26 C -0.086 4.086 27 C -0.174 4.174 28 C 0.113 3.887 29 F -0.106 7.106 30 H 0.075 0.925 31 H 0.213 0.787 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.244 0.756 35 H 0.232 0.768 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.826 -21.844 2.616 24.519 hybrid contribution 0.290 -1.732 0.011 1.756 sum 11.116 -23.575 2.627 26.196 Atomic orbital electron populations 1.70871 1.06569 1.29711 1.46064 1.26593 0.96514 1.02778 0.95076 0.83075 0.74378 0.73245 0.77236 1.20988 1.20519 1.20843 1.20600 0.94789 0.83621 1.52530 0.88042 1.41854 1.08494 1.05386 1.64032 1.19666 0.88320 0.84741 0.85526 1.90493 1.13666 1.86712 1.56840 1.20796 0.91217 0.84803 1.03178 1.44734 1.11230 1.03247 1.78792 1.15755 0.85115 0.80469 0.77710 1.90895 1.13894 1.84180 1.58333 1.44639 1.09271 1.03889 1.79836 1.21442 0.97530 0.77531 1.01379 0.83480 1.24334 1.05499 1.02891 0.91663 1.21510 0.93369 1.03039 0.98066 0.85278 1.19118 0.96726 1.01880 0.93689 1.17259 0.94183 0.99337 0.80176 1.91314 1.90508 1.90182 1.37609 1.21302 0.95411 1.02630 0.97748 1.20896 0.99811 0.95495 0.92366 1.21274 0.93039 1.01051 1.02045 1.17099 0.89167 0.94553 0.87906 1.91531 1.71498 1.74516 1.73007 0.92460 0.78687 0.89960 0.89927 0.75632 0.76785 0.87474 0.85195 0.83467 0.83581 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.71 13.68 55.50 0.76 -23.95 16 2 C -0.01 -0.16 5.50 -17.47 -0.10 -0.26 16 3 Si 1.10 23.75 29.92 -169.99 -5.09 18.66 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.39 -10.62 9.68 -14.93 -0.14 -10.77 16 8 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 9 N -0.56 -13.91 5.28 -10.96 -0.06 -13.96 16 10 C 0.43 10.01 7.85 -10.99 -0.09 9.93 16 11 O -0.59 -15.32 15.24 5.55 0.08 -15.24 16 12 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 13 N -0.72 -12.72 5.53 -66.41 -0.37 -13.09 16 14 C 0.71 12.19 8.57 -86.92 -0.74 11.44 16 15 O -0.59 -11.83 15.91 5.29 0.08 -11.75 16 16 N -0.72 -9.87 5.06 -58.68 -0.30 -10.16 16 17 C 0.13 1.51 6.37 -67.93 -0.43 1.07 16 18 H 0.15 1.81 7.40 -51.93 -0.38 1.43 16 19 C -0.21 -1.91 9.64 -26.69 -0.26 -2.17 16 20 C -0.14 -1.35 5.86 -91.73 -0.54 -1.89 16 21 H 0.13 1.10 7.74 -51.93 -0.40 0.69 16 22 C -0.11 -1.09 5.35 -104.49 -0.56 -1.64 16 23 C 0.11 1.01 5.70 -39.43 -0.22 0.78 16 24 F -0.12 -1.17 11.38 2.25 0.03 -1.15 16 25 C -0.15 -1.11 10.02 -39.51 -0.40 -1.51 16 26 C -0.07 -0.41 10.04 -39.61 -0.40 -0.81 16 27 C -0.16 -1.09 10.02 -39.51 -0.40 -1.49 16 28 C 0.13 1.21 7.25 -39.43 -0.29 0.93 16 29 F -0.13 -1.26 16.53 2.25 0.04 -1.23 16 30 H 0.26 7.02 6.78 -40.82 -0.28 6.75 16 31 H 0.38 8.73 6.73 -40.82 -0.27 8.45 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.41 7.03 7.45 -40.82 -0.30 6.73 16 35 H 0.39 4.95 4.92 -40.82 -0.20 4.75 16 36 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.13 1.26 4.96 -51.93 -0.26 1.01 16 38 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.15 0.49 8.06 -52.48 -0.42 0.06 16 40 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 349.60 15.07 5.27 5.27 Total: -1.00 -33.61 349.60 -7.95 -41.55 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -3.81 Total: 19.01 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -4.59 Total: 6.03 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.04 Total: -61.16 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: 0.17 Total: -26.99 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.06 Total: -2.37 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -5.09 Total: 18.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.61 -7.95 -41.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345017056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.833 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds