Wall clock time and date at job start Tue Mar 31 2020 22:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99481 * 2 1 4 4 H 1.48501 * 109.47056 * 90.00060 * 3 2 1 5 5 H 1.48496 * 109.47324 * 330.00271 * 3 2 1 6 6 H 1.48498 * 109.47081 * 210.00241 * 3 2 1 7 7 C 1.38942 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99679 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00443 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00013 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00352 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99652 * 180.02562 * 10 9 7 13 13 N 1.46509 * 109.46871 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99760 * 179.97438 * 13 12 10 15 15 O 1.21590 * 120.00287 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99945 * 179.97438 * 14 13 12 17 17 C 1.46496 * 119.99955 * 179.97438 * 16 14 13 18 18 H 1.09002 * 115.55193 * 350.58703 * 17 16 14 19 19 C 1.53001 * 117.49601 * 136.25419 * 17 16 14 20 20 C 1.52998 * 117.50094 * 204.91501 * 17 16 14 21 21 H 1.08998 * 117.50191 * 144.99598 * 20 17 16 22 22 C 1.50710 * 117.49733 * 0.02562 * 20 17 16 23 23 C 1.38419 * 120.02129 * 306.49236 * 22 20 17 24 24 F 1.35097 * 120.01692 * 359.97438 * 23 22 20 25 25 C 1.38474 * 119.96948 * 179.74380 * 23 22 20 26 26 C 1.38205 * 120.02488 * 0.50717 * 25 23 22 27 27 C 1.38202 * 120.05271 * 359.77006 * 26 25 23 28 28 C 1.38413 * 120.02608 * 126.76667 * 22 20 17 29 29 F 1.35103 * 120.01242 * 359.97438 * 28 22 20 30 30 H 0.97010 * 119.99380 * 180.02562 * 1 2 3 31 31 H 0.97007 * 119.99591 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47167 * 299.99701 * 12 10 9 33 33 H 1.08998 * 109.47433 * 60.00312 * 12 10 9 34 34 H 0.96998 * 119.99851 * 359.97438 * 13 12 10 35 35 H 0.96998 * 119.99666 * 0.02562 * 16 14 13 36 36 H 1.08999 * 117.49857 * 214.97795 * 19 17 16 37 37 H 1.08999 * 117.49896 * 0.02562 * 19 17 16 38 38 H 1.08003 * 119.98780 * 180.23091 * 25 23 22 39 39 H 1.08003 * 119.97213 * 179.74781 * 26 25 23 40 40 H 1.08003 * 119.98778 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 1.4001 5 1 1.4454 2.6527 -0.7000 6 1 3.5455 1.4404 -0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3907 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1961 -5.9764 -0.0016 14 6 1.7469 -7.2471 -0.0017 15 8 0.5515 -7.4694 -0.0018 16 7 2.6228 -8.2715 -0.0026 17 6 2.1346 -9.6527 -0.0021 18 1 1.0633 -9.7726 0.1599 19 6 2.8225 -10.6454 -0.9413 20 6 3.0601 -10.7290 0.5685 21 1 2.5979 -11.5570 1.1060 22 6 4.4042 -10.2870 1.0877 23 6 5.2486 -9.5449 0.2801 24 9 4.8686 -9.2167 -0.9740 25 6 6.4811 -9.1348 0.7601 26 6 6.8725 -9.4753 2.0411 27 6 6.0326 -10.2211 2.8462 28 6 4.7975 -10.6278 2.3703 29 9 3.9764 -11.3565 3.1577 30 1 -0.4850 -0.8402 0.0004 31 1 0.3534 -2.3907 -0.0005 32 1 0.6170 -4.9209 0.8886 33 1 0.6177 -4.9205 -0.8914 34 1 3.1498 -5.7991 -0.0019 35 1 3.5764 -8.0941 -0.0029 36 1 2.2039 -11.4187 -1.3969 37 1 3.6386 -10.2710 -1.5593 38 1 7.1386 -8.5525 0.1315 39 1 7.8357 -9.1585 2.4131 40 1 6.3397 -10.4869 3.8469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345017056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:38 Heat of formation + Delta-G solvation = -109.173928 kcal Electronic energy + Delta-G solvation = -28619.223318 eV Core-core repulsion = 24070.658786 eV Total energy + Delta-G solvation = -4548.564533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.54607 -50.06383 -41.44929 -40.43416 -39.93554 -38.30671 -36.62113 -35.42400 -34.14284 -33.22996 -31.70639 -31.35054 -29.10384 -26.28111 -25.09751 -24.00007 -23.46622 -22.49892 -21.75215 -21.62114 -20.18659 -20.03158 -19.21665 -18.52054 -18.10858 -17.56918 -17.18449 -16.98912 -16.96167 -16.68381 -16.48445 -16.44864 -15.91888 -15.77673 -15.69124 -15.50885 -15.38638 -15.10112 -14.22650 -14.12357 -14.09795 -13.87813 -13.39152 -13.36672 -13.09696 -12.90661 -12.80430 -12.53118 -11.96416 -11.91537 -11.86219 -11.78128 -11.58854 -11.56707 -10.63636 -10.47654 -10.19093 -10.02331 -9.85483 -9.54763 -8.97003 -6.12900 -0.16395 -0.10776 1.37904 1.46729 1.56377 1.83448 1.84175 1.91412 2.25150 2.39886 2.74094 2.83001 2.89545 3.09662 3.12843 3.24066 3.33556 3.51101 3.68148 3.80522 3.93144 3.95564 4.16156 4.24290 4.28888 4.33296 4.57056 4.68447 4.77686 4.86100 4.90119 5.00061 5.14274 5.15818 5.16289 5.36440 5.57464 5.69628 5.76020 5.89927 6.45730 6.61176 6.81537 7.30903 7.36948 7.73306 8.49824 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016483 B = 0.002392 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.309764 B =11700.472380 C =12482.277081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.039 4.039 3 Si 1.138 2.862 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.412 4.412 8 H 0.081 0.919 9 N -0.572 5.572 10 C 0.438 3.562 11 O -0.617 6.617 12 C 0.141 3.859 13 N -0.724 5.724 14 C 0.709 3.291 15 O -0.624 6.624 16 N -0.708 5.708 17 C 0.098 3.902 18 H 0.137 0.863 19 C -0.190 4.190 20 C -0.128 4.128 21 H 0.138 0.862 22 C -0.131 4.131 23 C 0.092 3.908 24 F -0.127 7.127 25 C -0.153 4.153 26 C -0.059 4.059 27 C -0.152 4.152 28 C 0.113 3.887 29 F -0.137 7.137 30 H 0.261 0.739 31 H 0.387 0.613 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.408 0.592 35 H 0.401 0.599 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.165 0.835 39 H 0.180 0.820 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.926 -23.956 3.066 27.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.238 4.238 3 Si 0.957 3.043 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.541 4.541 8 H 0.099 0.901 9 N -0.209 5.209 10 C 0.226 3.774 11 O -0.505 6.505 12 C 0.013 3.987 13 N -0.381 5.381 14 C 0.409 3.591 15 O -0.505 6.505 16 N -0.364 5.364 17 C -0.008 4.008 18 H 0.155 0.845 19 C -0.227 4.227 20 C -0.147 4.147 21 H 0.156 0.844 22 C -0.133 4.133 23 C 0.073 3.927 24 F -0.105 7.105 25 C -0.172 4.172 26 C -0.076 4.076 27 C -0.171 4.171 28 C 0.094 3.906 29 F -0.115 7.115 30 H 0.072 0.928 31 H 0.222 0.778 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.246 0.754 35 H 0.240 0.760 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.182 0.818 39 H 0.197 0.803 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 12.399 -22.465 3.046 25.840 hybrid contribution -0.110 -1.688 -0.097 1.694 sum 12.289 -24.153 2.949 27.259 Atomic orbital electron populations 1.70943 1.07168 1.29756 1.47221 1.27925 0.96605 1.05526 0.93758 0.82576 0.73718 0.69908 0.78109 1.19497 1.19935 1.19854 1.20617 0.94206 0.85130 1.54110 0.90065 1.41879 1.08899 1.05320 1.64831 1.20340 0.88140 0.85663 0.83302 1.90473 1.15146 1.87432 1.57415 1.20632 0.90935 0.82826 1.04334 1.44667 1.10995 1.03225 1.79214 1.15831 0.85078 0.80663 0.77535 1.90871 1.15232 1.84558 1.59844 1.44563 1.09126 1.04006 1.78659 1.21589 0.97625 0.76980 1.04645 0.84527 1.24381 1.04873 1.01814 0.91673 1.21535 0.93022 1.01774 0.98378 0.84378 1.19202 0.96892 1.02925 0.94305 1.17489 0.95089 1.00139 0.79991 1.91284 1.90710 1.90338 1.38176 1.21632 0.94811 1.02207 0.98536 1.21324 1.00742 0.94062 0.91510 1.21619 0.92091 1.00215 1.03127 1.17375 0.90057 0.95292 0.87885 1.91504 1.71948 1.74870 1.73184 0.92795 0.77818 0.88746 0.88701 0.75432 0.76031 0.85538 0.85375 0.81786 0.80253 0.81540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.27 13.68 21.66 0.30 -49.97 16 2 C -0.04 -2.08 5.50 84.92 0.47 -1.61 16 3 Si 1.14 47.10 29.92 68.60 2.05 49.15 16 4 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.41 -22.83 9.68 84.04 0.81 -22.01 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -28.52 5.28 -306.99 -1.62 -30.14 16 10 C 0.44 20.34 7.85 87.66 0.69 21.02 16 11 O -0.62 -32.11 15.24 -3.06 -0.05 -32.15 16 12 C 0.14 5.26 6.15 85.63 0.53 5.79 16 13 N -0.72 -25.17 5.53 -482.27 -2.67 -27.84 16 14 C 0.71 24.22 8.57 179.05 1.53 25.75 16 15 O -0.62 -24.85 15.91 -4.00 -0.06 -24.91 16 16 N -0.71 -19.25 5.06 -457.81 -2.32 -21.56 16 17 C 0.10 2.28 6.37 44.99 0.29 2.57 16 18 H 0.14 3.44 7.40 -2.39 -0.02 3.43 16 19 C -0.19 -3.36 9.64 30.62 0.30 -3.06 16 20 C -0.13 -2.38 5.86 -11.51 -0.07 -2.45 16 21 H 0.14 2.26 7.74 -2.39 -0.02 2.24 16 22 C -0.13 -2.43 5.35 -19.78 -0.11 -2.54 16 23 C 0.09 1.59 5.70 22.37 0.13 1.72 16 24 F -0.13 -2.43 11.38 44.97 0.51 -1.92 16 25 C -0.15 -1.91 10.02 22.32 0.22 -1.69 16 26 C -0.06 -0.54 10.04 22.25 0.22 -0.32 16 27 C -0.15 -1.78 10.02 22.32 0.22 -1.56 16 28 C 0.11 1.95 7.25 22.37 0.16 2.11 16 29 F -0.14 -2.62 16.53 44.97 0.74 -1.88 16 30 H 0.26 13.96 6.78 -92.70 -0.63 13.34 16 31 H 0.39 17.94 6.73 -92.70 -0.62 17.32 16 32 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 33 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.41 13.99 7.45 -92.71 -0.69 13.30 16 35 H 0.40 9.91 4.92 -92.71 -0.46 9.45 16 36 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.13 2.38 4.96 -2.39 -0.01 2.37 16 38 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 40 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -72.07 349.60 1.81 -70.26 By element: Atomic # 1 Polarization: 47.71 SS G_CDS: -0.48 Total: 47.24 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: 5.40 Total: 23.74 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -6.31 Total: -129.51 kcal Atomic # 8 Polarization: -56.96 SS G_CDS: -0.11 Total: -57.07 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 1.26 Total: -3.80 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.05 Total: 49.15 kcal Total: -72.07 1.81 -70.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345017056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.917 kcal (2) G-P(sol) polarization free energy of solvation -72.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds