Wall clock time and date at job start Tue Mar 31 2020 22:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86796 * 119.99680 * 2 1 4 4 H 1.48501 * 109.47303 * 270.00396 * 3 2 1 5 5 H 1.48495 * 109.47351 * 30.00488 * 3 2 1 6 6 H 1.48502 * 109.46984 * 150.00478 * 3 2 1 7 7 C 1.38951 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99464 * 359.97438 * 7 2 1 9 9 N 1.37094 * 119.99834 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99779 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00073 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99954 * 179.97438 * 10 9 7 13 13 N 1.46493 * 109.47296 * 179.97438 * 12 10 9 14 14 C 1.34772 * 120.00321 * 180.02562 * 13 12 10 15 15 O 1.21583 * 119.99774 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00291 * 180.02562 * 14 13 12 17 17 C 1.46504 * 120.00209 * 179.97438 * 16 14 13 18 18 H 1.08997 * 115.56012 * 350.68427 * 17 16 14 19 19 C 1.52998 * 117.49753 * 136.37814 * 17 16 14 20 20 C 1.52995 * 59.99937 * 107.48758 * 19 17 16 21 21 H 1.09000 * 117.52062 * 252.51418 * 20 19 17 22 22 C 1.50708 * 117.49927 * 107.48790 * 20 19 17 23 23 C 1.38420 * 120.02267 * 342.15939 * 22 20 19 24 24 F 1.35099 * 120.01211 * 359.95731 * 23 22 20 25 25 C 1.38468 * 119.97283 * 179.97438 * 23 22 20 26 26 C 1.38209 * 120.02692 * 0.02562 * 25 23 22 27 27 C 1.38210 * 120.04943 * 359.97438 * 26 25 23 28 28 C 1.38412 * 120.02507 * 162.13659 * 22 20 19 29 29 F 1.35101 * 120.01581 * 359.97438 * 28 22 20 30 30 H 0.96993 * 119.99981 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00052 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46997 * 59.99926 * 12 10 9 33 33 H 1.09005 * 109.46766 * 300.00024 * 12 10 9 34 34 H 0.97009 * 119.99902 * 359.97438 * 13 12 10 35 35 H 0.97004 * 119.99497 * 359.97438 * 16 14 13 36 36 H 1.08994 * 117.49807 * 359.97438 * 19 17 16 37 37 H 1.09006 * 117.49329 * 214.98278 * 19 17 16 38 38 H 1.08006 * 119.98523 * 179.71723 * 25 23 22 39 39 H 1.08003 * 119.97618 * 179.97438 * 26 25 23 40 40 H 1.07996 * 119.98530 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.6999 7 6 2.0090 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0021 11 8 3.4474 -3.4209 -0.0021 12 6 5.5609 -2.3705 -0.0033 13 7 6.0492 -3.7516 -0.0037 14 6 7.3742 -3.9979 -0.0042 15 8 8.1643 -3.0737 -0.0048 16 7 7.8236 -5.2686 -0.0050 17 6 9.2639 -5.5363 -0.0061 18 1 9.9035 -4.6681 -0.1654 19 6 9.7796 -6.6316 0.9293 20 6 9.7333 -6.8744 -0.5806 21 1 8.9705 -7.5554 -0.9581 22 6 11.0446 -6.8912 -1.3232 23 6 12.1750 -6.3399 -0.7451 24 9 12.1032 -5.7857 0.4849 25 6 13.3794 -6.3565 -1.4282 26 6 13.4530 -6.9226 -2.6868 27 6 12.3249 -7.4733 -3.2650 28 6 11.1195 -7.4583 -2.5836 29 9 10.0171 -7.9976 -3.1486 30 1 -0.4850 0.8400 0.0004 31 1 3.8649 -0.3632 -0.0014 32 1 5.9249 -1.8570 0.8867 33 1 5.9234 -1.8562 -0.8934 34 1 5.4188 -4.4889 -0.0028 35 1 7.1932 -6.0058 -0.0049 36 1 9.0473 -7.1528 1.5458 37 1 10.7585 -6.4840 1.3856 38 1 14.2606 -5.9223 -0.9792 39 1 14.3927 -6.9347 -3.2190 40 1 12.3834 -7.9150 -4.2487 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345017058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:41 Heat of formation + Delta-G solvation = -87.240854 kcal Electronic energy + Delta-G solvation = -27711.011537 eV Core-core repulsion = 23163.398093 eV Total energy + Delta-G solvation = -4547.613443 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.64111 -49.38225 -40.17794 -39.42038 -38.47410 -37.42213 -34.49979 -33.77272 -33.24344 -31.79696 -30.86309 -30.75475 -27.71670 -24.60251 -24.27869 -23.29752 -22.44005 -21.41406 -20.82184 -19.66907 -18.93763 -18.56516 -18.12582 -17.86538 -16.65210 -16.52879 -16.20581 -16.01346 -15.72790 -15.61406 -15.52819 -15.15585 -14.96494 -14.64307 -14.42681 -14.18313 -13.99529 -13.53631 -13.15561 -13.14004 -12.67651 -12.57778 -12.49158 -12.43846 -12.23695 -12.16504 -11.59669 -11.30998 -11.22694 -11.02516 -10.63994 -10.18883 -10.06032 -9.69898 -9.43279 -9.24054 -8.98911 -8.77360 -8.57219 -8.30451 -6.40788 -3.93411 0.44122 0.48076 2.55391 2.80552 3.00066 3.04820 3.12892 3.16839 3.39943 3.56373 3.70940 3.90764 3.95907 4.03745 4.14471 4.21778 4.30951 4.45922 4.59440 4.62743 4.68204 4.86180 5.14202 5.23292 5.33060 5.42538 5.49515 5.51225 5.60862 5.65781 5.70439 5.80332 5.81964 5.84672 6.25936 6.39089 6.59511 6.96087 7.44874 7.99808 8.10505 8.44118 8.66345 8.81583 9.29732 9.63289 10.71329 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.001897 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.101474 B =14757.686782 C =14989.772169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.576 5.576 10 C 0.438 3.562 11 O -0.580 6.580 12 C 0.126 3.874 13 N -0.723 5.723 14 C 0.710 3.290 15 O -0.594 6.594 16 N -0.719 5.719 17 C 0.130 3.870 18 H 0.141 0.859 19 C -0.198 4.198 20 C -0.139 4.139 21 H 0.124 0.876 22 C -0.114 4.114 23 C 0.128 3.872 24 F -0.121 7.121 25 C -0.159 4.159 26 C -0.068 4.068 27 C -0.160 4.160 28 C 0.134 3.866 29 F -0.127 7.127 30 H 0.276 0.724 31 H 0.375 0.625 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.409 0.591 35 H 0.400 0.600 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.815 -14.625 -3.472 32.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.464 6.464 12 C -0.003 4.003 13 N -0.380 5.380 14 C 0.410 3.590 15 O -0.473 6.473 16 N -0.372 5.372 17 C 0.023 3.977 18 H 0.159 0.841 19 C -0.237 4.237 20 C -0.158 4.158 21 H 0.142 0.858 22 C -0.116 4.116 23 C 0.109 3.891 24 F -0.099 7.099 25 C -0.178 4.178 26 C -0.086 4.086 27 C -0.179 4.179 28 C 0.114 3.886 29 F -0.105 7.105 30 H 0.086 0.914 31 H 0.208 0.792 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.246 0.754 35 H 0.234 0.766 36 H 0.121 0.879 37 H 0.149 0.851 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 28.785 -14.284 -3.444 32.318 hybrid contribution -0.370 0.589 0.048 0.697 sum 28.415 -13.695 -3.396 31.725 Atomic orbital electron populations 1.69620 1.05707 1.27819 1.48175 1.25075 0.95549 0.98198 0.97139 0.86663 0.79927 0.83723 0.79149 1.19385 1.19986 1.19182 1.19436 0.78949 0.96794 1.48657 0.86091 1.42110 1.07693 1.06131 1.65427 1.19646 0.88065 0.84880 0.84981 1.90536 1.69250 1.30921 1.55685 1.20824 0.93383 0.82711 1.03343 1.44730 1.05040 1.09473 1.78754 1.15738 0.82648 0.82897 0.77725 1.90903 1.55127 1.42986 1.58248 1.44398 1.06089 1.06700 1.79974 1.21428 0.82193 0.92725 1.01392 0.84150 1.24236 1.05667 1.02561 0.91210 1.21426 0.95561 1.02622 0.96232 0.85776 1.19119 0.94691 1.02993 0.94820 1.17197 0.93574 0.96895 0.81442 1.91382 1.96470 1.82798 1.39239 1.21240 0.97059 1.03276 0.96237 1.20862 0.98490 0.95288 0.93939 1.21239 0.91375 1.03542 1.01770 1.17138 0.83533 0.96857 0.91022 1.91539 1.51506 1.83234 1.84267 0.91386 0.79209 0.89771 0.89783 0.75377 0.76564 0.87879 0.85137 0.83791 0.83801 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.01 13.96 55.50 0.77 -24.23 16 2 C 0.04 1.20 5.50 -17.46 -0.10 1.10 16 3 Si 0.88 19.07 27.74 -169.99 -4.71 14.35 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 7 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 9 N -0.58 -13.44 5.09 -10.96 -0.06 -13.50 16 10 C 0.44 9.68 7.85 -10.98 -0.09 9.59 16 11 O -0.58 -14.65 15.24 5.54 0.08 -14.56 16 12 C 0.13 2.22 6.15 -5.20 -0.03 2.18 16 13 N -0.72 -11.73 5.53 -66.42 -0.37 -12.10 16 14 C 0.71 11.32 8.57 -86.92 -0.74 10.58 16 15 O -0.59 -11.35 15.91 5.29 0.08 -11.26 16 16 N -0.72 -8.72 5.57 -58.68 -0.33 -9.05 16 17 C 0.13 1.46 5.70 -67.93 -0.39 1.08 16 18 H 0.14 1.85 7.12 -51.93 -0.37 1.48 16 19 C -0.20 -1.76 9.59 -26.73 -0.26 -2.02 16 20 C -0.14 -1.29 5.80 -91.77 -0.53 -1.82 16 21 H 0.12 1.08 7.70 -51.93 -0.40 0.68 16 22 C -0.11 -1.03 5.65 -104.49 -0.59 -1.62 16 23 C 0.13 1.06 7.04 -39.43 -0.28 0.78 16 24 F -0.12 -1.09 12.90 2.25 0.03 -1.06 16 25 C -0.16 -0.95 10.02 -39.51 -0.40 -1.35 16 26 C -0.07 -0.33 10.04 -39.60 -0.40 -0.73 16 27 C -0.16 -0.98 10.03 -39.50 -0.40 -1.38 16 28 C 0.13 1.15 7.25 -39.43 -0.29 0.86 16 29 F -0.13 -1.24 16.51 2.25 0.04 -1.20 16 30 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.41 6.44 7.45 -40.82 -0.30 6.13 16 35 H 0.40 3.86 8.84 -40.82 -0.36 3.50 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.13 1.13 5.15 -51.93 -0.27 0.87 16 38 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 39 H 0.14 0.27 8.06 -52.48 -0.42 -0.15 16 40 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -33.77 354.84 -7.77 -41.53 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -4.03 Total: 17.17 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -4.63 Total: 8.55 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.02 Total: -58.88 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: 0.17 Total: -25.83 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.07 Total: -2.25 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.77 -7.77 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345017058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.707 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds