Wall clock time and date at job start Tue Mar 31 2020 22:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86796 * 119.99680 * 2 1 4 4 H 1.48501 * 109.47303 * 270.00396 * 3 2 1 5 5 H 1.48495 * 109.47351 * 30.00488 * 3 2 1 6 6 H 1.48502 * 109.46984 * 150.00478 * 3 2 1 7 7 C 1.38951 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99464 * 359.97438 * 7 2 1 9 9 N 1.37094 * 119.99834 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99779 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00073 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99954 * 179.97438 * 10 9 7 13 13 N 1.46493 * 109.47296 * 179.97438 * 12 10 9 14 14 C 1.34772 * 120.00321 * 180.02562 * 13 12 10 15 15 O 1.21583 * 119.99774 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00291 * 180.02562 * 14 13 12 17 17 C 1.46504 * 120.00209 * 179.97438 * 16 14 13 18 18 H 1.08997 * 115.56012 * 350.68427 * 17 16 14 19 19 C 1.52998 * 117.49753 * 136.37814 * 17 16 14 20 20 C 1.52995 * 59.99937 * 107.48758 * 19 17 16 21 21 H 1.09000 * 117.52062 * 252.51418 * 20 19 17 22 22 C 1.50708 * 117.49927 * 107.48790 * 20 19 17 23 23 C 1.38420 * 120.02267 * 342.15939 * 22 20 19 24 24 F 1.35099 * 120.01211 * 359.95731 * 23 22 20 25 25 C 1.38468 * 119.97283 * 179.97438 * 23 22 20 26 26 C 1.38209 * 120.02692 * 0.02562 * 25 23 22 27 27 C 1.38210 * 120.04943 * 359.97438 * 26 25 23 28 28 C 1.38412 * 120.02507 * 162.13659 * 22 20 19 29 29 F 1.35101 * 120.01581 * 359.97438 * 28 22 20 30 30 H 0.96993 * 119.99981 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00052 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46997 * 59.99926 * 12 10 9 33 33 H 1.09005 * 109.46766 * 300.00024 * 12 10 9 34 34 H 0.97009 * 119.99902 * 359.97438 * 13 12 10 35 35 H 0.97004 * 119.99497 * 359.97438 * 16 14 13 36 36 H 1.08994 * 117.49807 * 359.97438 * 19 17 16 37 37 H 1.09006 * 117.49329 * 214.98278 * 19 17 16 38 38 H 1.08006 * 119.98523 * 179.71723 * 25 23 22 39 39 H 1.08003 * 119.97618 * 179.97438 * 26 25 23 40 40 H 1.07996 * 119.98530 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.6999 7 6 2.0090 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0021 11 8 3.4474 -3.4209 -0.0021 12 6 5.5609 -2.3705 -0.0033 13 7 6.0492 -3.7516 -0.0037 14 6 7.3742 -3.9979 -0.0042 15 8 8.1643 -3.0737 -0.0048 16 7 7.8236 -5.2686 -0.0050 17 6 9.2639 -5.5363 -0.0061 18 1 9.9035 -4.6681 -0.1654 19 6 9.7796 -6.6316 0.9293 20 6 9.7333 -6.8744 -0.5806 21 1 8.9705 -7.5554 -0.9581 22 6 11.0446 -6.8912 -1.3232 23 6 12.1750 -6.3399 -0.7451 24 9 12.1032 -5.7857 0.4849 25 6 13.3794 -6.3565 -1.4282 26 6 13.4530 -6.9226 -2.6868 27 6 12.3249 -7.4733 -3.2650 28 6 11.1195 -7.4583 -2.5836 29 9 10.0171 -7.9976 -3.1486 30 1 -0.4850 0.8400 0.0004 31 1 3.8649 -0.3632 -0.0014 32 1 5.9249 -1.8570 0.8867 33 1 5.9234 -1.8562 -0.8934 34 1 5.4188 -4.4889 -0.0028 35 1 7.1932 -6.0058 -0.0049 36 1 9.0473 -7.1528 1.5458 37 1 10.7585 -6.4840 1.3856 38 1 14.2606 -5.9223 -0.9792 39 1 14.3927 -6.9347 -3.2190 40 1 12.3834 -7.9150 -4.2487 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345017058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:41 Heat of formation + Delta-G solvation = -111.999643 kcal Electronic energy + Delta-G solvation = -27712.085158 eV Core-core repulsion = 23163.398093 eV Total energy + Delta-G solvation = -4548.687065 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.25707 -50.03277 -41.38052 -40.36530 -39.90986 -38.29894 -36.29238 -35.34570 -34.27604 -33.81861 -31.50611 -31.26721 -29.28085 -26.29960 -25.03015 -23.85407 -23.38860 -22.11425 -21.98680 -21.48280 -20.63204 -19.66729 -19.11224 -18.55491 -17.62502 -17.47578 -17.08320 -16.95984 -16.91552 -16.68146 -16.59390 -16.36577 -15.96221 -15.77606 -15.59419 -15.57819 -15.06111 -14.85322 -14.32632 -14.17181 -14.01842 -13.83131 -13.78039 -13.25861 -13.20192 -12.98578 -12.92783 -12.46636 -12.44968 -12.00463 -11.95095 -11.72460 -11.58706 -11.52844 -10.67015 -10.43284 -10.32521 -10.02503 -9.76815 -9.45020 -8.46057 -6.08141 -0.09141 -0.03798 1.31000 1.33986 1.41137 1.45543 1.77324 1.94328 2.20246 2.31702 2.73042 2.84889 2.92832 3.09982 3.13207 3.36391 3.43132 3.52944 3.69825 3.85658 3.93654 3.97619 4.18057 4.23812 4.37505 4.42705 4.62262 4.73962 4.83616 4.88865 4.93036 5.05437 5.16956 5.21244 5.23376 5.41011 5.48267 5.76986 5.85232 5.87703 6.48018 6.77254 6.91998 7.27296 7.42989 7.77073 8.70282 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.001897 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.101474 B =14757.686782 C =14989.772169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.232 1.232 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.577 5.577 10 C 0.446 3.554 11 O -0.615 6.615 12 C 0.138 3.862 13 N -0.724 5.724 14 C 0.710 3.290 15 O -0.626 6.626 16 N -0.704 5.704 17 C 0.106 3.894 18 H 0.119 0.881 19 C -0.182 4.182 20 C -0.126 4.126 21 H 0.128 0.872 22 C -0.136 4.136 23 C 0.110 3.890 24 F -0.130 7.130 25 C -0.156 4.156 26 C -0.056 4.056 27 C -0.157 4.157 28 C 0.111 3.889 29 F -0.140 7.140 30 H 0.281 0.719 31 H 0.392 0.608 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.411 0.589 35 H 0.412 0.588 36 H 0.116 0.884 37 H 0.134 0.866 38 H 0.166 0.834 39 H 0.182 0.818 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.472 -14.061 -3.958 35.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.217 5.217 10 C 0.233 3.767 11 O -0.501 6.501 12 C 0.010 3.990 13 N -0.381 5.381 14 C 0.410 3.590 15 O -0.507 6.507 16 N -0.358 5.358 17 C 0.000 4.000 18 H 0.137 0.863 19 C -0.220 4.220 20 C -0.146 4.146 21 H 0.146 0.854 22 C -0.138 4.138 23 C 0.090 3.910 24 F -0.108 7.108 25 C -0.174 4.174 26 C -0.073 4.073 27 C -0.176 4.176 28 C 0.092 3.908 29 F -0.119 7.119 30 H 0.091 0.909 31 H 0.228 0.772 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.249 0.751 35 H 0.249 0.751 36 H 0.134 0.866 37 H 0.152 0.848 38 H 0.184 0.816 39 H 0.199 0.801 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 32.471 -13.776 -3.928 35.490 hybrid contribution -1.445 0.238 0.159 1.473 sum 31.026 -13.539 -3.769 34.060 Atomic orbital electron populations 1.69782 1.08012 1.29469 1.49240 1.26083 0.96460 1.02633 0.95718 0.85438 0.79582 0.76989 0.80085 1.18079 1.19799 1.15573 1.19025 0.80931 0.95276 1.50777 0.91840 1.41909 1.06139 1.07411 1.66242 1.20478 0.89981 0.83885 0.82329 1.90525 1.70784 1.32319 1.56427 1.20720 0.89283 0.83944 1.05102 1.44677 1.05330 1.09019 1.79115 1.15794 0.82027 0.83637 0.77505 1.90878 1.55713 1.44273 1.59850 1.44269 1.06922 1.05815 1.78785 1.21409 0.81135 0.93062 1.04441 0.86295 1.24271 1.05837 1.00581 0.91330 1.21413 0.95950 1.00655 0.96558 0.85448 1.19199 0.94781 1.04393 0.95437 1.17467 0.94385 0.97610 0.81522 1.91349 1.96568 1.83060 1.39858 1.21603 0.96832 1.02519 0.96493 1.21323 0.99431 0.93263 0.93317 1.21586 0.90704 1.02864 1.02442 1.17447 0.84138 0.97866 0.91346 1.91501 1.52334 1.83595 1.84441 0.90910 0.77186 0.87909 0.87914 0.75150 0.75096 0.86613 0.84844 0.81595 0.80085 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.53 13.96 21.66 0.30 -54.23 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 0.96 38.29 27.74 68.60 1.90 40.20 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.23 -7.93 6.52 99.48 0.65 -7.29 16 7 C -0.33 -18.87 10.16 84.04 0.85 -18.02 16 8 H 0.06 4.27 7.39 -2.91 -0.02 4.25 16 9 N -0.58 -26.69 5.09 -306.98 -1.56 -28.26 16 10 C 0.45 19.59 7.85 87.66 0.69 20.28 16 11 O -0.61 -31.81 15.24 -3.08 -0.05 -31.86 16 12 C 0.14 4.63 6.15 85.64 0.53 5.15 16 13 N -0.72 -22.86 5.53 -482.31 -2.67 -25.53 16 14 C 0.71 22.16 8.57 179.06 1.53 23.69 16 15 O -0.63 -23.49 15.91 -3.98 -0.06 -23.55 16 16 N -0.70 -16.76 5.57 -457.82 -2.55 -19.32 16 17 C 0.11 2.38 5.70 44.99 0.26 2.63 16 18 H 0.12 3.22 7.12 -2.39 -0.02 3.20 16 19 C -0.18 -3.11 9.59 30.59 0.29 -2.82 16 20 C -0.13 -2.30 5.80 -11.54 -0.07 -2.36 16 21 H 0.13 2.18 7.70 -2.39 -0.02 2.16 16 22 C -0.14 -2.39 5.65 -19.78 -0.11 -2.50 16 23 C 0.11 1.71 7.04 22.37 0.16 1.86 16 24 F -0.13 -2.28 12.90 44.97 0.58 -1.70 16 25 C -0.16 -1.49 10.02 22.32 0.22 -1.27 16 26 C -0.06 -0.36 10.04 22.26 0.22 -0.13 16 27 C -0.16 -1.56 10.03 22.32 0.22 -1.34 16 28 C 0.11 1.81 7.25 22.37 0.16 1.97 16 29 F -0.14 -2.69 16.51 44.97 0.74 -1.95 16 30 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.39 15.24 5.76 -92.71 -0.53 14.71 16 32 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 34 H 0.41 12.79 7.45 -92.70 -0.69 12.10 16 35 H 0.41 7.68 8.84 -92.71 -0.82 6.86 16 36 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.13 2.24 5.15 -2.38 -0.01 2.23 16 38 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.18 -0.19 8.06 -2.91 -0.02 -0.22 16 40 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -77.44 354.84 1.12 -76.32 By element: Atomic # 1 Polarization: 43.69 SS G_CDS: -0.95 Total: 42.74 kcal Atomic # 6 Polarization: 21.70 SS G_CDS: 5.43 Total: 27.13 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -6.48 Total: -127.33 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -0.11 Total: -55.41 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 1.32 Total: -3.65 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.90 Total: 40.20 kcal Total: -77.44 1.12 -76.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345017058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.678 kcal (2) G-P(sol) polarization free energy of solvation -77.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds