Wall clock time and date at job start Tue Mar 31 2020 22:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 120.00177 * 2 1 4 4 H 1.48500 * 109.47288 * 240.00188 * 3 2 1 5 5 H 1.48500 * 109.46871 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47135 * 119.99895 * 3 2 1 7 7 C 1.38951 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00152 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00173 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99890 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00422 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47598 * 180.02562 * 12 10 9 14 14 C 1.34773 * 120.00302 * 180.02562 * 13 12 10 15 15 O 1.21585 * 119.99842 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99991 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00198 * 180.02562 * 16 14 13 18 18 H 1.09005 * 115.54555 * 9.32141 * 17 16 14 19 19 C 1.52995 * 117.51840 * 223.62740 * 17 16 14 20 20 C 1.52999 * 117.50359 * 154.99334 * 17 16 14 21 21 H 1.08996 * 117.49247 * 0.02911 * 20 17 16 22 22 C 1.50696 * 117.50145 * 215.00432 * 20 17 16 23 23 C 1.38417 * 120.02346 * 309.01822 * 22 20 17 24 24 F 1.35102 * 120.01323 * 359.97438 * 23 22 20 25 25 C 1.38475 * 119.97238 * 179.74682 * 23 22 20 26 26 C 1.38208 * 120.02504 * 0.50352 * 25 23 22 27 27 C 1.38203 * 120.05139 * 359.77178 * 26 25 23 28 28 C 1.38416 * 120.02704 * 129.29144 * 22 20 17 29 29 F 1.35107 * 120.01118 * 359.97438 * 28 22 20 30 30 H 0.97003 * 119.99830 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99884 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46874 * 60.00260 * 12 10 9 33 33 H 1.09001 * 109.47317 * 300.00313 * 12 10 9 34 34 H 0.97006 * 119.99392 * 0.02562 * 13 12 10 35 35 H 0.96997 * 119.99925 * 359.97438 * 16 14 13 36 36 H 1.09007 * 117.49703 * 145.02542 * 19 17 16 37 37 H 1.09000 * 117.50216 * 0.02562 * 19 17 16 38 38 H 1.08006 * 119.98805 * 180.23506 * 25 23 22 39 39 H 1.08001 * 119.97186 * 179.74445 * 26 25 23 40 40 H 1.07996 * 119.98759 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1958 -5.9765 0.0016 14 6 1.7465 -7.2471 0.0017 15 8 0.5512 -7.4693 0.0018 16 7 2.6224 -8.2715 0.0026 17 6 2.1341 -9.6528 0.0021 18 1 1.0626 -9.7725 -0.1583 19 6 2.8235 -10.6466 0.9391 20 6 3.0588 -10.7288 -0.5705 21 1 4.0307 -10.4091 -0.9464 22 6 2.4186 -11.8731 -1.3133 23 6 1.3779 -12.5786 -0.7344 24 9 0.9358 -12.2420 0.4970 25 6 0.7869 -13.6266 -1.4201 26 6 1.2427 -13.9748 -2.6775 27 6 2.2856 -13.2747 -3.2540 28 6 2.8746 -12.2231 -2.5724 29 9 3.8937 -11.5385 -3.1365 30 1 -0.4850 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6169 -4.9209 -0.8886 33 1 0.6174 -4.9205 0.8913 34 1 3.1495 -5.7992 0.0019 35 1 3.5760 -8.0943 0.0029 36 1 2.2055 -11.4202 1.3950 37 1 3.6403 -10.2728 1.5565 38 1 -0.0277 -14.1748 -0.9702 39 1 0.7839 -14.7949 -3.2097 40 1 2.6412 -13.5480 -4.2365 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345017062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:44 Heat of formation + Delta-G solvation = -94.259998 kcal Electronic energy + Delta-G solvation = -27649.192809 eV Core-core repulsion = 23101.274993 eV Total energy + Delta-G solvation = -4547.917816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.61178 -49.35618 -40.10716 -39.36964 -38.29673 -37.35613 -34.41600 -33.69010 -33.17382 -31.37377 -30.81973 -30.72368 -27.49960 -24.64505 -24.32750 -23.27252 -22.42558 -21.38377 -20.76864 -19.60256 -18.64047 -18.42800 -17.96022 -17.83053 -16.60915 -16.50155 -16.15540 -15.98281 -15.69762 -15.57792 -15.42303 -15.07002 -14.79172 -14.58778 -14.31564 -14.04515 -14.01392 -13.50515 -13.45122 -13.11702 -12.64458 -12.53345 -12.40222 -12.17982 -12.09618 -11.62466 -11.53562 -11.26857 -11.09715 -10.98590 -10.50312 -10.31311 -10.09610 -9.62128 -9.39091 -9.21383 -8.90900 -8.62380 -8.50401 -8.09471 -6.50654 -3.92759 0.46962 0.50732 2.62233 2.84166 3.14170 3.22025 3.23879 3.25963 3.42704 3.72804 3.77137 3.93949 3.99253 4.10098 4.17758 4.29217 4.39071 4.50606 4.65439 4.71600 4.89244 4.90129 5.17911 5.26083 5.36069 5.45260 5.53624 5.54085 5.68091 5.68536 5.85056 5.93156 6.00605 6.08288 6.28699 6.44815 6.72103 7.03735 7.46434 7.92721 8.18122 8.45769 8.74078 9.05123 9.40007 9.87955 10.66124 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025680 B = 0.001806 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.069119 B =15499.477038 C =15797.428016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.128 3.872 13 N -0.722 5.722 14 C 0.709 3.291 15 O -0.594 6.594 16 N -0.719 5.719 17 C 0.131 3.869 18 H 0.141 0.859 19 C -0.199 4.199 20 C -0.139 4.139 21 H 0.124 0.876 22 C -0.114 4.114 23 C 0.128 3.872 24 F -0.120 7.120 25 C -0.159 4.159 26 C -0.068 4.068 27 C -0.160 4.160 28 C 0.134 3.866 29 F -0.127 7.127 30 H 0.275 0.725 31 H 0.396 0.604 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.407 0.593 35 H 0.399 0.601 36 H 0.131 0.869 37 H 0.102 0.898 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.694 -29.213 -3.427 29.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.379 5.379 14 C 0.409 3.591 15 O -0.472 6.472 16 N -0.372 5.372 17 C 0.023 3.977 18 H 0.158 0.842 19 C -0.237 4.237 20 C -0.159 4.159 21 H 0.142 0.858 22 C -0.116 4.116 23 C 0.109 3.891 24 F -0.099 7.099 25 C -0.178 4.178 26 C -0.086 4.086 27 C -0.179 4.179 28 C 0.114 3.886 29 F -0.106 7.106 30 H 0.085 0.915 31 H 0.230 0.770 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.245 0.755 35 H 0.234 0.766 36 H 0.149 0.851 37 H 0.121 0.879 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.250 -29.093 -3.397 29.377 hybrid contribution 0.913 1.216 0.030 1.520 sum 3.163 -27.878 -3.368 28.258 Atomic orbital electron populations 1.69608 1.05997 1.28629 1.49211 1.25331 0.95680 0.99938 0.96794 0.85864 0.78764 0.80142 0.79135 1.19788 1.20855 1.19794 1.19678 0.93428 0.82008 1.48386 0.87738 1.41778 1.09501 1.04429 1.62616 1.19751 0.88289 0.85003 0.85565 1.90492 1.13751 1.86862 1.57413 1.20803 0.91179 0.84766 1.03246 1.44754 1.11350 1.03198 1.78613 1.15757 0.85100 0.80476 0.77778 1.90905 1.13949 1.84146 1.58213 1.44401 1.09021 1.03728 1.80091 1.21420 0.97582 0.77375 1.01276 0.84151 1.24246 1.04603 1.03718 0.91182 1.21425 1.01403 0.96838 0.96251 0.85815 1.19118 0.98425 0.99203 0.94820 1.17201 0.94691 0.95836 0.81379 1.91380 1.87979 1.91416 1.39090 1.21242 1.02340 0.98001 0.96210 1.20857 0.94905 0.98857 0.93987 1.21233 0.98634 0.96309 1.01751 1.17140 0.87727 0.92651 0.91067 1.91539 1.56397 1.78323 1.84312 0.91530 0.76989 0.89925 0.89899 0.75522 0.76645 0.85113 0.87918 0.83788 0.83810 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.97 13.05 55.50 0.72 -23.25 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.31 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 9 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 10 C 0.43 9.91 7.85 -10.99 -0.09 9.82 16 11 O -0.60 -15.38 15.24 5.54 0.08 -15.30 16 12 C 0.13 2.42 6.15 -5.20 -0.03 2.39 16 13 N -0.72 -12.35 5.53 -66.42 -0.37 -12.72 16 14 C 0.71 11.86 8.57 -86.92 -0.74 11.12 16 15 O -0.59 -11.87 15.91 5.29 0.08 -11.79 16 16 N -0.72 -9.15 5.57 -58.68 -0.33 -9.47 16 17 C 0.13 1.54 5.70 -67.93 -0.39 1.15 16 18 H 0.14 1.92 7.14 -51.93 -0.37 1.55 16 19 C -0.20 -1.85 9.59 -26.73 -0.26 -2.10 16 20 C -0.14 -1.34 5.80 -91.77 -0.53 -1.88 16 21 H 0.12 1.12 7.70 -51.93 -0.40 0.72 16 22 C -0.11 -1.06 5.65 -104.49 -0.59 -1.65 16 23 C 0.13 1.10 7.04 -39.43 -0.28 0.82 16 24 F -0.12 -1.12 12.91 2.25 0.03 -1.09 16 25 C -0.16 -1.00 10.02 -39.51 -0.40 -1.39 16 26 C -0.07 -0.35 10.04 -39.61 -0.40 -0.74 16 27 C -0.16 -1.02 10.02 -39.51 -0.40 -1.42 16 28 C 0.13 1.18 7.25 -39.43 -0.29 0.89 16 29 F -0.13 -1.27 16.51 2.25 0.04 -1.23 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.40 9.51 7.90 -40.82 -0.32 9.19 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.41 6.72 7.45 -40.82 -0.30 6.42 16 35 H 0.40 4.06 8.84 -40.82 -0.36 3.70 16 36 H 0.13 1.18 5.13 -51.93 -0.27 0.92 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 39 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 40 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -32.68 357.98 -8.12 -40.80 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -4.07 Total: 17.71 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: -4.62 Total: 9.10 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.03 Total: -59.19 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: 0.17 Total: -27.09 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.07 Total: -2.33 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.68 -8.12 -40.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345017062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.461 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds