Wall clock time and date at job start Tue Mar 31 2020 22:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 120.00177 * 2 1 4 4 H 1.48500 * 109.47288 * 240.00188 * 3 2 1 5 5 H 1.48500 * 109.46871 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47135 * 119.99895 * 3 2 1 7 7 C 1.38951 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00152 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00173 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99890 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00422 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47598 * 180.02562 * 12 10 9 14 14 C 1.34773 * 120.00302 * 180.02562 * 13 12 10 15 15 O 1.21585 * 119.99842 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99991 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00198 * 180.02562 * 16 14 13 18 18 H 1.09005 * 115.54555 * 9.32141 * 17 16 14 19 19 C 1.52995 * 117.51840 * 223.62740 * 17 16 14 20 20 C 1.52999 * 117.50359 * 154.99334 * 17 16 14 21 21 H 1.08996 * 117.49247 * 0.02911 * 20 17 16 22 22 C 1.50696 * 117.50145 * 215.00432 * 20 17 16 23 23 C 1.38417 * 120.02346 * 309.01822 * 22 20 17 24 24 F 1.35102 * 120.01323 * 359.97438 * 23 22 20 25 25 C 1.38475 * 119.97238 * 179.74682 * 23 22 20 26 26 C 1.38208 * 120.02504 * 0.50352 * 25 23 22 27 27 C 1.38203 * 120.05139 * 359.77178 * 26 25 23 28 28 C 1.38416 * 120.02704 * 129.29144 * 22 20 17 29 29 F 1.35107 * 120.01118 * 359.97438 * 28 22 20 30 30 H 0.97003 * 119.99830 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99884 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46874 * 60.00260 * 12 10 9 33 33 H 1.09001 * 109.47317 * 300.00313 * 12 10 9 34 34 H 0.97006 * 119.99392 * 0.02562 * 13 12 10 35 35 H 0.96997 * 119.99925 * 359.97438 * 16 14 13 36 36 H 1.09007 * 117.49703 * 145.02542 * 19 17 16 37 37 H 1.09000 * 117.50216 * 0.02562 * 19 17 16 38 38 H 1.08006 * 119.98805 * 180.23506 * 25 23 22 39 39 H 1.08001 * 119.97186 * 179.74445 * 26 25 23 40 40 H 1.07996 * 119.98759 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1958 -5.9765 0.0016 14 6 1.7465 -7.2471 0.0017 15 8 0.5512 -7.4693 0.0018 16 7 2.6224 -8.2715 0.0026 17 6 2.1341 -9.6528 0.0021 18 1 1.0626 -9.7725 -0.1583 19 6 2.8235 -10.6466 0.9391 20 6 3.0588 -10.7288 -0.5705 21 1 4.0307 -10.4091 -0.9464 22 6 2.4186 -11.8731 -1.3133 23 6 1.3779 -12.5786 -0.7344 24 9 0.9358 -12.2420 0.4970 25 6 0.7869 -13.6266 -1.4201 26 6 1.2427 -13.9748 -2.6775 27 6 2.2856 -13.2747 -3.2540 28 6 2.8746 -12.2231 -2.5724 29 9 3.8937 -11.5385 -3.1365 30 1 -0.4850 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6169 -4.9209 -0.8886 33 1 0.6174 -4.9205 0.8913 34 1 3.1495 -5.7992 0.0019 35 1 3.5760 -8.0943 0.0029 36 1 2.2055 -11.4202 1.3950 37 1 3.6403 -10.2728 1.5565 38 1 -0.0277 -14.1748 -0.9702 39 1 0.7839 -14.7949 -3.2097 40 1 2.6412 -13.5480 -4.2365 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345017062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:44 Heat of formation + Delta-G solvation = -116.997969 kcal Electronic energy + Delta-G solvation = -27650.178801 eV Core-core repulsion = 23101.274993 eV Total energy + Delta-G solvation = -4548.903808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.26039 -50.03132 -41.36083 -40.27287 -39.86582 -38.29566 -36.24789 -35.32246 -34.26412 -33.36281 -31.50008 -31.26774 -29.12413 -26.44817 -25.03762 -23.85851 -23.41712 -22.12019 -22.00548 -21.38062 -20.16959 -19.69544 -19.11527 -18.55470 -17.59189 -17.47502 -17.05246 -16.95828 -16.88713 -16.59859 -16.49347 -16.36525 -16.07965 -15.72777 -15.60304 -15.57264 -15.27195 -14.89302 -14.16806 -13.97322 -13.82338 -13.73831 -13.54165 -13.25793 -13.20096 -12.94531 -12.89962 -12.47311 -12.46912 -12.13756 -11.95279 -11.72283 -11.56670 -11.53317 -10.57096 -10.43058 -10.11533 -10.01611 -9.76860 -9.45121 -8.51068 -6.01507 -0.09241 -0.03860 1.37977 1.39828 1.45242 1.54875 1.87251 1.95908 2.27727 2.31976 2.84813 2.89696 2.97783 3.15928 3.19752 3.36578 3.43141 3.52703 3.69594 3.85555 3.93666 4.16044 4.20769 4.23986 4.40570 4.44291 4.62215 4.73840 4.83531 4.88687 4.92861 5.05287 5.16961 5.21121 5.25326 5.37868 5.41389 5.76936 5.85335 5.91901 6.47444 6.93404 7.02820 7.39453 7.46292 7.93601 8.65543 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025680 B = 0.001806 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.069119 B =15499.477038 C =15797.428016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.141 3.859 13 N -0.721 5.721 14 C 0.709 3.291 15 O -0.628 6.628 16 N -0.703 5.703 17 C 0.105 3.895 18 H 0.117 0.883 19 C -0.182 4.182 20 C -0.125 4.125 21 H 0.129 0.871 22 C -0.136 4.136 23 C 0.109 3.891 24 F -0.130 7.130 25 C -0.156 4.156 26 C -0.056 4.056 27 C -0.157 4.157 28 C 0.112 3.888 29 F -0.140 7.140 30 H 0.280 0.720 31 H 0.399 0.601 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.411 0.589 35 H 0.413 0.587 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.166 0.834 39 H 0.182 0.818 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.836 -30.809 -3.979 31.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.378 5.378 14 C 0.409 3.591 15 O -0.510 6.510 16 N -0.357 5.357 17 C -0.002 4.002 18 H 0.135 0.865 19 C -0.220 4.220 20 C -0.145 4.145 21 H 0.146 0.854 22 C -0.138 4.138 23 C 0.090 3.910 24 F -0.109 7.109 25 C -0.175 4.175 26 C -0.073 4.073 27 C -0.176 4.176 28 C 0.092 3.908 29 F -0.118 7.118 30 H 0.090 0.910 31 H 0.233 0.767 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.249 0.751 35 H 0.250 0.750 36 H 0.152 0.848 37 H 0.135 0.865 38 H 0.184 0.816 39 H 0.199 0.801 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.417 -30.733 -3.949 31.080 hybrid contribution 0.849 1.547 0.163 1.772 sum 3.265 -29.186 -3.786 29.611 Atomic orbital electron populations 1.69677 1.07004 1.29722 1.49130 1.26152 0.96570 1.02735 0.95766 0.84911 0.77698 0.76173 0.79093 1.19486 1.19614 1.19486 1.19707 0.92985 0.83514 1.50533 0.89526 1.41825 1.09614 1.04566 1.63368 1.20381 0.88104 0.85866 0.83605 1.90468 1.15147 1.87544 1.58079 1.20607 0.90951 0.82975 1.04169 1.44652 1.11154 1.03055 1.78978 1.15831 0.85019 0.80720 0.77532 1.90879 1.15598 1.84600 1.59895 1.44243 1.09225 1.03396 1.78823 1.21406 0.97041 0.77160 1.04601 0.86480 1.24286 1.04201 1.02169 0.91342 1.21415 1.00725 0.95774 0.96562 0.85350 1.19199 0.99448 0.99703 0.95480 1.17481 0.95196 0.96904 0.81456 1.91347 1.88102 1.91669 1.39743 1.21607 1.02347 0.97015 0.96491 1.21323 0.93756 0.98914 0.93332 1.21586 0.98368 0.95178 1.02430 1.17445 0.88193 0.93780 0.91357 1.91502 1.57054 1.78817 1.84472 0.91041 0.76665 0.88990 0.88889 0.75093 0.75049 0.84816 0.86533 0.81602 0.80054 0.81711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.91 13.05 21.66 0.28 -48.63 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 3 Si 1.00 41.93 29.55 68.60 2.03 43.96 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.34 -18.73 9.68 84.04 0.81 -17.92 16 8 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.31 5.29 -306.98 -1.62 -29.93 16 10 C 0.43 20.25 7.85 87.66 0.69 20.94 16 11 O -0.62 -32.46 15.24 -3.09 -0.05 -32.50 16 12 C 0.14 5.33 6.15 85.63 0.53 5.86 16 13 N -0.72 -24.57 5.53 -482.31 -2.67 -27.24 16 14 C 0.71 23.79 8.57 179.06 1.53 25.32 16 15 O -0.63 -25.47 15.91 -3.98 -0.06 -25.53 16 16 N -0.70 -17.81 5.57 -457.82 -2.55 -20.36 16 17 C 0.10 2.48 5.70 44.99 0.26 2.74 16 18 H 0.12 3.37 7.14 -2.38 -0.02 3.35 16 19 C -0.18 -3.28 9.59 30.59 0.29 -2.98 16 20 C -0.13 -2.39 5.80 -11.54 -0.07 -2.45 16 21 H 0.13 2.27 7.70 -2.39 -0.02 2.26 16 22 C -0.14 -2.50 5.65 -19.78 -0.11 -2.61 16 23 C 0.11 1.79 7.04 22.37 0.16 1.95 16 24 F -0.13 -2.42 12.91 44.97 0.58 -1.84 16 25 C -0.16 -1.61 10.02 22.32 0.22 -1.39 16 26 C -0.06 -0.39 10.04 22.25 0.22 -0.17 16 27 C -0.16 -1.65 10.02 22.32 0.22 -1.42 16 28 C 0.11 1.88 7.25 22.37 0.16 2.05 16 29 F -0.14 -2.76 16.51 44.97 0.74 -2.01 16 30 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 32 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 33 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.41 13.49 7.45 -92.70 -0.69 12.80 16 35 H 0.41 8.14 8.84 -92.71 -0.82 7.32 16 36 H 0.13 2.37 5.13 -2.38 -0.01 2.36 16 37 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 39 H 0.18 -0.09 8.06 -2.91 -0.02 -0.11 16 40 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -71.12 357.98 0.98 -70.13 By element: Atomic # 1 Polarization: 45.27 SS G_CDS: -1.09 Total: 44.18 kcal Atomic # 6 Polarization: 24.38 SS G_CDS: 5.39 Total: 29.77 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -6.56 Total: -126.16 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -0.11 Total: -58.04 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 1.32 Total: -3.85 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -71.12 0.98 -70.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345017062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.864 kcal (2) G-P(sol) polarization free energy of solvation -71.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds