Wall clock time and date at job start Tue Mar 31 2020 22:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 117.00219 * 2 1 4 4 O 1.20827 * 119.99814 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00298 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47337 * 180.02562 * 5 3 2 7 7 C 1.37100 * 119.99783 * 89.99924 * 6 5 3 8 8 H 1.08004 * 119.99728 * 156.72635 * 7 6 5 9 9 C 1.38951 * 120.00152 * 337.00299 * 7 6 5 10 10 N 1.31414 * 119.99877 * 8.36559 * 9 7 6 11 11 Si 1.86796 * 120.00112 * 188.36085 * 9 7 6 12 12 H 1.48498 * 109.46795 * 90.00033 * 11 9 7 13 13 H 1.48499 * 109.47472 * 209.99877 * 11 9 7 14 14 H 1.48498 * 109.47381 * 330.00283 * 11 9 7 15 15 C 1.34776 * 120.00214 * 270.00620 * 6 5 3 16 16 O 1.21297 * 120.00083 * 5.02849 * 15 6 5 17 17 C 1.50697 * 119.99817 * 185.03781 * 15 6 5 18 18 H 1.08997 * 115.55661 * 28.86488 * 17 15 6 19 19 C 1.53006 * 117.49768 * 174.57957 * 17 15 6 20 20 H 1.08998 * 117.49718 * 214.97819 * 19 17 15 21 21 C 1.50703 * 117.49644 * 359.97438 * 19 17 15 22 22 C 1.38232 * 119.99810 * 277.41874 * 21 19 17 23 23 C 1.38237 * 119.99738 * 179.77044 * 22 21 19 24 24 C 1.38228 * 120.00048 * 0.48409 * 23 22 21 25 25 C 1.38238 * 120.00210 * 359.79404 * 24 23 22 26 26 C 1.38232 * 119.99686 * 359.95331 * 25 24 23 27 27 C 1.52998 * 59.99979 * 107.48571 * 19 17 15 28 28 F 1.39905 * 117.49494 * 252.50846 * 27 19 17 29 29 F 1.39899 * 117.50108 * 107.49483 * 27 19 17 30 30 H 1.08998 * 109.47104 * 299.99658 * 1 2 3 31 31 H 1.09002 * 109.47143 * 60.00046 * 1 2 3 32 32 H 1.09005 * 109.47185 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47205 * 60.00392 * 5 3 2 34 34 H 1.09000 * 109.47403 * 300.00239 * 5 3 2 35 35 H 0.97000 * 120.00128 * 184.98675 * 10 9 7 36 36 H 1.08006 * 120.00360 * 359.97438 * 22 21 19 37 37 H 1.08005 * 120.00276 * 180.25704 * 23 22 21 38 38 H 1.08004 * 120.00086 * 179.77344 * 24 23 22 39 39 H 1.07993 * 120.00588 * 179.97438 * 25 24 23 40 40 H 1.07998 * 120.00251 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1766 3.3363 1.1878 8 1 4.8186 4.2039 1.2262 9 6 3.5527 2.8820 2.3433 10 7 2.9113 1.7350 2.3362 11 14 3.6258 3.9015 3.9068 12 1 2.4690 4.8318 3.9456 13 1 3.5772 3.0019 5.0873 14 1 4.8892 4.6815 3.9306 15 6 4.1722 3.3268 -1.1667 16 8 3.9124 2.7754 -2.2154 17 6 4.7082 4.7352 -1.1684 18 1 5.3549 4.9932 -0.3299 19 6 5.0222 5.3699 -2.5247 20 1 5.8759 6.0454 -2.5787 21 6 4.7724 4.5384 -3.7566 22 6 5.7170 3.6193 -4.1733 23 6 5.4857 2.8532 -5.3005 24 6 4.3143 3.0135 -6.0166 25 6 3.3722 3.9367 -5.6032 26 6 3.6011 4.6991 -4.4731 27 6 3.8026 5.8349 -1.7265 28 9 2.5404 5.4559 -2.1962 29 9 3.8683 7.0948 -1.1218 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.9557 0.7809 -0.8909 34 1 3.9564 0.7805 0.8891 35 1 2.4152 1.4519 3.1202 36 1 6.6343 3.4973 -3.6163 37 1 6.2219 2.1321 -5.6238 38 1 4.1353 2.4176 -6.8994 39 1 2.4572 4.0623 -6.1629 40 1 2.8650 5.4201 -4.1498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346195953.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:25 Heat of formation + Delta-G solvation = -127.975402 kcal Electronic energy + Delta-G solvation = -31057.122720 eV Core-core repulsion = 26475.450143 eV Total energy + Delta-G solvation = -4581.672577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.31273 -46.96825 -39.68350 -39.06644 -38.10298 -35.89463 -34.97959 -34.53013 -31.64246 -30.43792 -30.26896 -28.63131 -26.43425 -25.08854 -23.57816 -22.82590 -22.01030 -20.73199 -20.04125 -19.28708 -17.89592 -17.32594 -16.52291 -16.27218 -16.14111 -16.02199 -15.64410 -15.30856 -15.18096 -14.65979 -14.43387 -14.14552 -13.99538 -13.71937 -13.42391 -13.37801 -13.12441 -12.94118 -12.70536 -12.52798 -12.37986 -12.32513 -12.05824 -11.55352 -11.39141 -11.21686 -10.98533 -10.90111 -10.76344 -10.64987 -10.51022 -10.37418 -9.80877 -9.67108 -9.46291 -9.03423 -8.90399 -8.41633 -8.04284 -7.96088 -6.54071 -4.15312 1.79156 1.90428 2.90372 3.10818 3.16586 3.19050 3.21610 3.64559 3.71897 4.03628 4.15055 4.22286 4.29870 4.71568 4.88867 4.97746 5.07359 5.21218 5.36496 5.37625 5.53015 5.71174 5.71725 5.79374 5.83041 5.96241 6.00413 6.04165 6.10768 6.25984 6.39544 6.45185 6.47078 6.81998 6.87966 6.93136 7.01220 7.21253 7.45616 7.46325 7.59633 8.13495 8.88480 9.12998 9.23687 9.62024 10.48758 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011289 B = 0.005395 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.675710 B = 5188.936902 C = 6532.467048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.489 3.511 4 O -0.510 6.510 5 C 0.160 3.840 6 N -0.423 5.423 7 C -0.330 4.330 8 H 0.102 0.898 9 C 0.046 3.954 10 N -0.882 5.882 11 Si 0.929 3.071 12 H -0.276 1.276 13 H -0.282 1.282 14 H -0.268 1.268 15 C 0.494 3.506 16 O -0.562 6.562 17 C -0.143 4.143 18 H 0.145 0.855 19 C -0.096 4.096 20 H 0.140 0.860 21 C -0.020 4.020 22 C -0.087 4.087 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.103 4.103 27 C 0.225 3.775 28 F -0.144 7.144 29 F -0.161 7.161 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.274 0.726 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.958 1.713 -7.658 8.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.331 3.669 4 O -0.396 6.396 5 C 0.035 3.965 6 N -0.142 5.142 7 C -0.456 4.456 8 H 0.120 0.880 9 C -0.157 4.157 10 N -0.522 5.522 11 Si 0.755 3.245 12 H -0.201 1.201 13 H -0.207 1.207 14 H -0.193 1.193 15 C 0.281 3.719 16 O -0.445 6.445 17 C -0.165 4.165 18 H 0.163 0.837 19 C -0.116 4.116 20 H 0.158 0.842 21 C -0.021 4.021 22 C -0.105 4.105 23 C -0.137 4.137 24 C -0.144 4.144 25 C -0.137 4.137 26 C -0.121 4.121 27 C 0.188 3.812 28 F -0.124 7.124 29 F -0.142 7.142 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.505 1.599 -7.975 8.856 hybrid contribution -0.737 0.670 1.366 1.691 sum 2.768 2.269 -6.608 7.515 Atomic orbital electron populations 1.22910 0.78941 1.01723 1.01480 1.86457 1.21442 1.35546 1.85688 1.23905 0.92303 0.80463 0.70227 1.90530 1.66612 1.36400 1.46065 1.20672 0.87219 0.84693 1.03949 1.43245 1.57328 1.08583 1.05053 1.19667 1.28960 1.12440 0.84580 0.88002 1.25244 0.95010 0.95658 0.99818 1.69635 1.32273 1.18791 1.31504 0.85887 0.79007 0.79398 0.80196 1.20132 1.20703 1.19262 1.18726 0.83301 0.85604 0.84223 1.90666 1.55560 1.67439 1.30874 1.23659 1.00648 0.94382 0.97772 0.83718 1.22446 0.97251 0.99945 0.91938 0.84247 1.18499 0.94967 0.95922 0.92672 1.20592 0.98752 0.95052 0.96093 1.20884 0.97535 0.99344 0.95985 1.20964 0.94662 0.98792 1.00013 1.20932 0.98772 0.96921 0.97119 1.21105 0.96090 1.00021 0.94913 1.19737 0.80131 0.81035 1.00325 1.93015 1.41200 1.90464 1.87747 1.93008 1.96334 1.41000 1.83850 0.92841 0.93235 0.89639 0.90646 0.84310 0.91473 0.86801 0.86766 0.86984 0.86854 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.86 16 2 O -0.37 -8.22 10.56 -39.24 -0.41 -8.64 16 3 C 0.49 12.22 5.91 36.01 0.21 12.43 16 4 O -0.51 -14.37 15.93 -18.75 -0.30 -14.67 16 5 C 0.16 3.79 5.21 -5.19 -0.03 3.76 16 6 N -0.42 -10.30 2.11 -116.09 -0.25 -10.54 16 7 C -0.33 -8.01 9.14 -14.93 -0.14 -8.14 16 8 H 0.10 2.28 6.01 -52.48 -0.32 1.96 16 9 C 0.05 1.13 5.41 -17.47 -0.09 1.03 16 10 N -0.88 -22.28 8.20 55.50 0.46 -21.82 16 11 Si 0.93 19.44 29.56 -169.99 -5.03 14.41 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 14 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 15 C 0.49 11.38 7.00 -10.99 -0.08 11.30 16 16 O -0.56 -13.64 12.84 5.54 0.07 -13.57 16 17 C -0.14 -2.72 5.30 -91.77 -0.49 -3.21 16 18 H 0.15 2.48 6.54 -51.93 -0.34 2.14 16 19 C -0.10 -1.55 5.94 -91.77 -0.55 -2.10 16 20 H 0.14 1.72 8.14 -51.93 -0.42 1.29 16 21 C -0.02 -0.35 3.26 -104.62 -0.34 -0.69 16 22 C -0.09 -1.39 8.76 -39.58 -0.35 -1.74 16 23 C -0.12 -1.78 10.05 -39.59 -0.40 -2.18 16 24 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 25 C -0.12 -1.89 10.05 -39.58 -0.40 -2.29 16 26 C -0.10 -1.80 8.49 -39.58 -0.34 -2.14 16 27 C 0.23 4.23 4.97 -26.73 -0.13 4.10 16 28 F -0.14 -3.10 13.98 2.25 0.03 -3.07 16 29 F -0.16 -2.86 17.60 2.25 0.04 -2.82 16 30 H 0.05 0.99 8.13 -51.93 -0.42 0.56 16 31 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.69 7.50 -51.93 -0.39 1.30 16 34 H 0.14 3.30 6.29 -51.93 -0.33 2.98 16 35 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 36 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 38 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.12 2.14 5.87 -52.49 -0.31 1.83 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -31.04 347.51 -6.78 -37.83 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -4.20 Total: 7.92 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -2.44 Total: 9.73 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.21 Total: -32.36 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.64 Total: -36.88 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.07 Total: -5.89 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.04 -6.78 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346195953.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.148 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds