Wall clock time and date at job start Tue Mar 31 2020 22:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 117.00219 * 2 1 4 4 O 1.20827 * 119.99814 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00298 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47337 * 180.02562 * 5 3 2 7 7 C 1.37100 * 119.99783 * 89.99924 * 6 5 3 8 8 H 1.08004 * 119.99728 * 156.72635 * 7 6 5 9 9 C 1.38951 * 120.00152 * 337.00299 * 7 6 5 10 10 N 1.31414 * 119.99877 * 8.36559 * 9 7 6 11 11 Si 1.86796 * 120.00112 * 188.36085 * 9 7 6 12 12 H 1.48498 * 109.46795 * 90.00033 * 11 9 7 13 13 H 1.48499 * 109.47472 * 209.99877 * 11 9 7 14 14 H 1.48498 * 109.47381 * 330.00283 * 11 9 7 15 15 C 1.34776 * 120.00214 * 270.00620 * 6 5 3 16 16 O 1.21297 * 120.00083 * 5.02849 * 15 6 5 17 17 C 1.50697 * 119.99817 * 185.03781 * 15 6 5 18 18 H 1.08997 * 115.55661 * 28.86488 * 17 15 6 19 19 C 1.53006 * 117.49768 * 174.57957 * 17 15 6 20 20 H 1.08998 * 117.49718 * 214.97819 * 19 17 15 21 21 C 1.50703 * 117.49644 * 359.97438 * 19 17 15 22 22 C 1.38232 * 119.99810 * 277.41874 * 21 19 17 23 23 C 1.38237 * 119.99738 * 179.77044 * 22 21 19 24 24 C 1.38228 * 120.00048 * 0.48409 * 23 22 21 25 25 C 1.38238 * 120.00210 * 359.79404 * 24 23 22 26 26 C 1.38232 * 119.99686 * 359.95331 * 25 24 23 27 27 C 1.52998 * 59.99979 * 107.48571 * 19 17 15 28 28 F 1.39905 * 117.49494 * 252.50846 * 27 19 17 29 29 F 1.39899 * 117.50108 * 107.49483 * 27 19 17 30 30 H 1.08998 * 109.47104 * 299.99658 * 1 2 3 31 31 H 1.09002 * 109.47143 * 60.00046 * 1 2 3 32 32 H 1.09005 * 109.47185 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47205 * 60.00392 * 5 3 2 34 34 H 1.09000 * 109.47403 * 300.00239 * 5 3 2 35 35 H 0.97000 * 120.00128 * 184.98675 * 10 9 7 36 36 H 1.08006 * 120.00360 * 359.97438 * 22 21 19 37 37 H 1.08005 * 120.00276 * 180.25704 * 23 22 21 38 38 H 1.08004 * 120.00086 * 179.77344 * 24 23 22 39 39 H 1.07993 * 120.00588 * 179.97438 * 25 24 23 40 40 H 1.07998 * 120.00251 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1766 3.3363 1.1878 8 1 4.8186 4.2039 1.2262 9 6 3.5527 2.8820 2.3433 10 7 2.9113 1.7350 2.3362 11 14 3.6258 3.9015 3.9068 12 1 2.4690 4.8318 3.9456 13 1 3.5772 3.0019 5.0873 14 1 4.8892 4.6815 3.9306 15 6 4.1722 3.3268 -1.1667 16 8 3.9124 2.7754 -2.2154 17 6 4.7082 4.7352 -1.1684 18 1 5.3549 4.9932 -0.3299 19 6 5.0222 5.3699 -2.5247 20 1 5.8759 6.0454 -2.5787 21 6 4.7724 4.5384 -3.7566 22 6 5.7170 3.6193 -4.1733 23 6 5.4857 2.8532 -5.3005 24 6 4.3143 3.0135 -6.0166 25 6 3.3722 3.9367 -5.6032 26 6 3.6011 4.6991 -4.4731 27 6 3.8026 5.8349 -1.7265 28 9 2.5404 5.4559 -2.1962 29 9 3.8683 7.0948 -1.1218 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.9557 0.7809 -0.8909 34 1 3.9564 0.7805 0.8891 35 1 2.4152 1.4519 3.1202 36 1 6.6343 3.4973 -3.6163 37 1 6.2219 2.1321 -5.6238 38 1 4.1353 2.4176 -6.8994 39 1 2.4572 4.0623 -6.1629 40 1 2.8650 5.4201 -4.1498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346195953.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:24 Heat of formation + Delta-G solvation = -143.474656 kcal Electronic energy + Delta-G solvation = -31057.794818 eV Core-core repulsion = 26475.450143 eV Total energy + Delta-G solvation = -4582.344675 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.79530 -48.46562 -41.42491 -40.65611 -39.60105 -37.53168 -36.69990 -36.32060 -33.47960 -31.63016 -31.56142 -30.37120 -28.02258 -26.87197 -25.02949 -24.25457 -23.26516 -22.21503 -21.69996 -21.02551 -19.40951 -18.95656 -18.38567 -17.91052 -17.58181 -17.40645 -17.29059 -16.99006 -16.92205 -16.16354 -16.01972 -15.57893 -15.40478 -15.17495 -15.06973 -14.85300 -14.63393 -14.49178 -14.23693 -14.06469 -13.92384 -13.72412 -13.40872 -13.28641 -13.10551 -12.88385 -12.65588 -12.50143 -12.21125 -12.09267 -11.97366 -11.73917 -11.58500 -11.48191 -11.01837 -10.92004 -10.55753 -9.90453 -9.60894 -9.29389 -8.37312 -6.02435 0.57250 0.69008 1.26311 1.43199 1.53229 1.55310 1.79069 1.83112 2.01458 2.30687 2.60706 2.65456 2.90272 3.13204 3.38526 3.49909 3.58107 3.92426 4.14107 4.19448 4.26202 4.29707 4.33963 4.38348 4.38949 4.52655 4.60270 4.64006 4.70691 4.80680 4.86815 4.95919 5.21866 5.28460 5.38072 5.65078 5.69230 5.74023 5.76274 5.77796 6.28193 6.28557 7.03924 7.24194 7.42993 7.81670 8.64892 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011289 B = 0.005395 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.675710 B = 5188.936902 C = 6532.467048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.376 6.376 3 C 0.490 3.510 4 O -0.551 6.551 5 C 0.160 3.840 6 N -0.439 5.439 7 C -0.341 4.341 8 H 0.119 0.881 9 C 0.000 4.000 10 N -0.905 5.905 11 Si 0.987 3.013 12 H -0.292 1.292 13 H -0.281 1.281 14 H -0.246 1.246 15 C 0.488 3.512 16 O -0.579 6.579 17 C -0.157 4.157 18 H 0.165 0.835 19 C -0.060 4.060 20 H 0.185 0.815 21 C -0.042 4.042 22 C -0.097 4.097 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.133 4.133 26 C -0.127 4.127 27 C 0.207 3.793 28 F -0.167 7.167 29 F -0.156 7.156 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.270 0.730 36 H 0.129 0.871 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 1.788 -8.154 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.334 3.666 4 O -0.440 6.440 5 C 0.035 3.965 6 N -0.158 5.158 7 C -0.468 4.468 8 H 0.136 0.864 9 C -0.200 4.200 10 N -0.545 5.545 11 Si 0.812 3.188 12 H -0.219 1.219 13 H -0.206 1.206 14 H -0.169 1.169 15 C 0.277 3.723 16 O -0.463 6.463 17 C -0.179 4.179 18 H 0.182 0.818 19 C -0.079 4.079 20 H 0.202 0.798 21 C -0.042 4.042 22 C -0.115 4.115 23 C -0.142 4.142 24 C -0.147 4.147 25 C -0.151 4.151 26 C -0.145 4.145 27 C 0.170 3.830 28 F -0.147 7.147 29 F -0.136 7.136 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.152 0.848 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.953 1.662 -8.482 9.962 hybrid contribution -1.259 0.557 1.419 1.977 sum 3.694 2.218 -7.063 8.274 Atomic orbital electron populations 1.23254 0.76554 1.04757 1.00900 1.86427 1.23785 1.34014 1.85042 1.24151 0.92810 0.80559 0.69085 1.90497 1.67552 1.37790 1.48157 1.20661 0.86709 0.85213 1.03919 1.43469 1.57871 1.08837 1.05654 1.20087 1.29193 1.12810 0.84664 0.86357 1.26040 0.94913 0.96536 1.02466 1.69729 1.33081 1.19940 1.31785 0.84991 0.79081 0.77827 0.76940 1.21878 1.20598 1.16937 1.19335 0.82475 0.86951 0.83557 1.90639 1.55991 1.68377 1.31324 1.23679 1.01493 0.92104 1.00623 0.81785 1.22658 0.96616 0.98644 0.89969 0.79826 1.18705 0.95365 0.96932 0.93183 1.20862 0.99117 0.94866 0.96691 1.21293 0.98137 0.99334 0.95463 1.21347 0.94211 0.98364 1.00774 1.21234 0.99867 0.97028 0.96972 1.21201 0.96368 1.00810 0.96130 1.20022 0.80047 0.81137 1.01803 1.92967 1.42912 1.90767 1.88088 1.93011 1.96253 1.40428 1.83953 0.93855 0.93431 0.84777 0.89928 0.84742 0.92007 0.85311 0.84056 0.84190 0.85345 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 10.56 113.37 1.20 2.57 16 2 O -0.38 -16.55 10.56 -51.36 -0.54 -17.09 16 3 C 0.49 24.91 5.91 71.24 0.42 25.33 16 4 O -0.55 -31.80 15.93 21.96 0.35 -31.45 16 5 C 0.16 7.72 5.21 85.63 0.45 8.16 16 6 N -0.44 -21.44 2.11 -639.58 -1.35 -22.79 16 7 C -0.34 -16.45 9.14 84.04 0.77 -15.68 16 8 H 0.12 5.13 6.01 -2.91 -0.02 5.11 16 9 C 0.00 0.02 5.41 84.93 0.46 0.48 16 10 N -0.90 -46.26 8.20 21.66 0.18 -46.08 16 11 Si 0.99 39.55 29.56 68.60 2.03 41.58 16 12 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 13 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 14 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 15 C 0.49 22.38 7.00 87.66 0.61 22.99 16 16 O -0.58 -28.12 12.84 -3.08 -0.04 -28.16 16 17 C -0.16 -5.81 5.30 -11.54 -0.06 -5.87 16 18 H 0.16 5.28 6.54 -2.39 -0.02 5.26 16 19 C -0.06 -1.82 5.94 -11.54 -0.07 -1.89 16 20 H 0.18 3.83 8.14 -2.39 -0.02 3.82 16 21 C -0.04 -1.38 3.26 -19.87 -0.06 -1.44 16 22 C -0.10 -2.93 8.76 22.27 0.20 -2.73 16 23 C -0.12 -3.42 10.05 22.27 0.22 -3.19 16 24 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 25 C -0.13 -4.10 10.05 22.27 0.22 -3.88 16 26 C -0.13 -4.41 8.49 22.27 0.19 -4.22 16 27 C 0.21 7.65 4.97 30.59 0.15 7.80 16 28 F -0.17 -7.33 13.98 44.97 0.63 -6.70 16 29 F -0.16 -5.34 17.60 44.97 0.79 -4.55 16 30 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 31 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 32 H 0.13 3.34 8.14 -2.38 -0.02 3.32 16 33 H 0.08 3.75 7.50 -2.38 -0.02 3.73 16 34 H 0.14 6.53 6.29 -2.39 -0.02 6.52 16 35 H 0.27 13.47 8.32 -92.71 -0.77 12.70 16 36 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 37 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 39 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 40 H 0.11 3.98 5.87 -2.91 -0.02 3.96 16 Total: -1.00 -68.12 347.51 8.06 -60.06 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 1.10 Total: 30.09 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: 4.92 Total: 25.09 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -1.17 Total: -68.87 kcal Atomic # 8 Polarization: -76.47 SS G_CDS: -0.23 Total: -76.70 kcal Atomic # 9 Polarization: -12.67 SS G_CDS: 1.42 Total: -11.25 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -68.12 8.06 -60.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346195953.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.410 kcal (2) G-P(sol) polarization free energy of solvation -68.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds