Wall clock time and date at job start Tue Mar 31 2020 22:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34235 * 116.99836 * 2 1 4 4 O 1.20824 * 119.99840 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00118 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.47244 * 179.97438 * 5 3 2 7 7 C 1.37090 * 120.00134 * 270.00251 * 6 5 3 8 8 H 1.08000 * 120.00107 * 198.59444 * 7 6 5 9 9 C 1.38949 * 119.99887 * 18.59345 * 7 6 5 10 10 N 1.31405 * 120.00224 * 5.63818 * 9 7 6 11 11 Si 1.86801 * 119.99894 * 185.63617 * 9 7 6 12 12 H 1.48499 * 109.47247 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47267 * 120.00200 * 11 9 7 14 14 H 1.48498 * 109.47183 * 240.00165 * 11 9 7 15 15 C 1.34777 * 119.99680 * 90.00188 * 6 5 3 16 16 O 1.21296 * 120.00183 * 4.91804 * 15 6 5 17 17 C 1.50700 * 119.99825 * 184.92352 * 15 6 5 18 18 H 1.09003 * 115.55129 * 331.07591 * 17 15 6 19 19 C 1.53001 * 117.49786 * 185.40163 * 17 15 6 20 20 H 1.08996 * 117.49913 * 0.02562 * 19 17 15 21 21 C 1.50701 * 117.49542 * 144.99704 * 19 17 15 22 22 C 1.38238 * 120.00043 * 279.50089 * 21 19 17 23 23 C 1.38238 * 120.00162 * 179.81069 * 22 21 19 24 24 C 1.38234 * 119.99656 * 0.39814 * 23 22 21 25 25 C 1.38233 * 120.00178 * 359.85587 * 24 23 22 26 26 C 1.38233 * 120.00215 * 99.77661 * 21 19 17 27 27 C 1.52997 * 60.00055 * 252.48619 * 19 17 15 28 28 F 1.39904 * 117.49676 * 107.49277 * 27 19 17 29 29 F 1.39895 * 117.49925 * 252.51036 * 27 19 17 30 30 H 1.09003 * 109.47113 * 59.99975 * 1 2 3 31 31 H 1.09006 * 109.46541 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47540 * 299.99719 * 1 2 3 33 33 H 1.08997 * 109.47210 * 60.00180 * 5 3 2 34 34 H 1.08998 * 109.47355 * 300.00054 * 5 3 2 35 35 H 0.97005 * 119.99980 * 184.99934 * 10 9 7 36 36 H 1.08008 * 119.99949 * 359.97438 * 22 21 19 37 37 H 1.07994 * 119.99883 * 180.22897 * 23 22 21 38 38 H 1.08003 * 119.99627 * 179.83292 * 24 23 22 39 39 H 1.08001 * 119.99956 * 179.97438 * 25 24 23 40 40 H 1.08004 * 119.99876 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.1764 3.3365 -1.1877 8 1 4.7566 4.2471 -1.2125 9 6 3.6273 2.8305 -2.3595 10 7 2.8307 1.7864 -2.3145 11 14 4.0217 3.6344 -3.9989 12 1 4.9361 4.7837 -3.7795 13 1 4.6771 2.6444 -4.8909 14 1 2.7658 4.1140 -4.6299 15 6 4.1722 3.3269 1.1668 16 8 4.0871 2.7236 2.2156 17 6 4.4908 4.7998 1.1684 18 1 5.0192 5.1675 0.2887 19 6 4.8206 5.4497 2.5136 20 1 4.8075 4.8119 3.3974 21 6 5.8513 6.5492 2.5211 22 6 7.1973 6.2349 2.5065 23 6 8.1427 7.2434 2.5094 24 6 7.7421 8.5662 2.5352 25 6 6.3961 8.8804 2.5551 26 6 5.4507 7.8719 2.5483 27 6 3.4825 5.7405 1.8312 28 9 2.3347 5.1675 2.3895 29 9 3.3093 7.0066 1.2620 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 3.9564 0.7808 -0.8891 34 1 3.9557 0.7811 0.8908 35 1 2.5054 1.3887 -3.1373 36 1 7.5104 5.2013 2.4902 37 1 9.1943 6.9979 2.4943 38 1 8.4807 9.3541 2.5401 39 1 6.0831 9.9139 2.5756 40 1 4.3990 8.1175 2.5637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346195954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:27 Heat of formation + Delta-G solvation = -136.961019 kcal Electronic energy + Delta-G solvation = -30231.949930 eV Core-core repulsion = 25649.887708 eV Total energy + Delta-G solvation = -4582.062222 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.29637 -46.92107 -39.68345 -39.23677 -38.39502 -35.95554 -35.06440 -34.59750 -31.68239 -30.85750 -30.58643 -28.67848 -26.44704 -25.17039 -23.75376 -22.94487 -22.24152 -20.75322 -20.09925 -19.39429 -17.98426 -17.44217 -16.59351 -16.41379 -16.22701 -16.08777 -15.61290 -15.33127 -15.17185 -14.89414 -14.53727 -14.37184 -14.17845 -13.76894 -13.52533 -13.30218 -13.23878 -13.08243 -12.97198 -12.66726 -12.50839 -12.40343 -12.16620 -11.54613 -11.38993 -11.29497 -11.18319 -11.14694 -10.84609 -10.75210 -10.55316 -10.40683 -9.81213 -9.70783 -9.53146 -9.06710 -8.89242 -8.87395 -8.65346 -8.10123 -6.57808 -4.17973 1.32146 1.43708 2.84792 3.09595 3.13753 3.16342 3.23278 3.59299 3.71621 3.81096 4.00600 4.18605 4.23964 4.64927 4.80081 4.88754 4.99822 5.01652 5.10474 5.16702 5.31897 5.52384 5.63309 5.71182 5.73031 5.80729 5.97334 5.98754 6.04712 6.09366 6.15102 6.24613 6.42446 6.49359 6.52373 6.62685 6.70425 7.00431 7.17986 7.37501 7.56066 8.08588 8.83211 9.10501 9.19554 9.54938 10.46114 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.004134 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.906733 B = 6771.127785 C = 7728.261063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.374 6.374 3 C 0.491 3.509 4 O -0.506 6.506 5 C 0.158 3.842 6 N -0.416 5.416 7 C -0.330 4.330 8 H 0.105 0.895 9 C 0.041 3.959 10 N -0.878 5.878 11 Si 0.935 3.065 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.279 1.279 15 C 0.493 3.507 16 O -0.590 6.590 17 C -0.138 4.138 18 H 0.144 0.856 19 C -0.094 4.094 20 H 0.149 0.851 21 C -0.058 4.058 22 C -0.100 4.100 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.109 4.109 27 C 0.229 3.771 28 F -0.148 7.148 29 F -0.158 7.158 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.275 0.725 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.066 5.752 4.797 9.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.292 6.292 3 C 0.333 3.667 4 O -0.391 6.391 5 C 0.033 3.967 6 N -0.133 5.133 7 C -0.457 4.457 8 H 0.123 0.877 9 C -0.163 4.163 10 N -0.518 5.518 11 Si 0.761 3.239 12 H -0.191 1.191 13 H -0.203 1.203 14 H -0.205 1.205 15 C 0.281 3.719 16 O -0.475 6.475 17 C -0.160 4.160 18 H 0.162 0.838 19 C -0.114 4.114 20 H 0.166 0.834 21 C -0.058 4.058 22 C -0.118 4.118 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.127 4.127 27 C 0.191 3.809 28 F -0.128 7.128 29 F -0.138 7.138 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.149 0.851 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.579 5.682 5.128 9.471 hybrid contribution -0.531 0.554 -1.243 1.460 sum 5.048 6.236 3.885 8.914 Atomic orbital electron populations 1.22912 0.78812 1.01702 1.01566 1.86441 1.21537 1.35439 1.85784 1.23693 0.92072 0.80572 0.70371 1.90527 1.66490 1.36341 1.45736 1.20560 0.87520 0.84674 1.03939 1.43249 1.56408 1.08568 1.05110 1.19797 1.31696 1.10424 0.83754 0.87745 1.25264 0.93987 0.96615 1.00451 1.69547 1.30678 1.22558 1.29016 0.85729 0.78382 0.79113 0.80673 1.19103 1.20331 1.20517 1.18736 0.83061 0.86220 0.83872 1.90567 1.57979 1.67599 1.31371 1.23593 0.99633 0.94894 0.97845 0.83793 1.22405 0.91283 0.98393 0.99292 0.83358 1.18999 0.93131 0.92638 1.00999 1.20981 0.91842 0.99948 0.99077 1.21103 0.99366 0.92783 1.00710 1.21156 0.95959 0.96461 1.00491 1.21111 0.93056 0.99096 1.00636 1.21344 1.00611 0.91934 0.98846 1.19715 0.81212 0.80346 0.99596 1.93073 1.51276 1.83459 1.85008 1.92954 1.96118 1.39543 1.85201 0.92729 0.89664 0.93220 0.85123 0.89986 0.91360 0.85476 0.85937 0.86256 0.86043 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.86 16 2 O -0.37 -8.14 10.57 -39.27 -0.41 -8.55 16 3 C 0.49 12.23 5.82 36.00 0.21 12.44 16 4 O -0.51 -14.19 15.76 -18.75 -0.30 -14.49 16 5 C 0.16 3.75 5.29 -5.19 -0.03 3.72 16 6 N -0.42 -10.26 2.11 -116.10 -0.25 -10.50 16 7 C -0.33 -8.05 9.19 -14.94 -0.14 -8.18 16 8 H 0.10 2.38 5.92 -52.49 -0.31 2.07 16 9 C 0.04 0.99 5.25 -17.47 -0.09 0.90 16 10 N -0.88 -22.11 8.17 55.50 0.45 -21.65 16 11 Si 0.93 19.15 29.56 -169.99 -5.02 14.12 16 12 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 13 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 C 0.49 11.72 7.04 -10.98 -0.08 11.65 16 16 O -0.59 -14.92 15.83 5.54 0.09 -14.83 16 17 C -0.14 -2.76 5.12 -91.77 -0.47 -3.23 16 18 H 0.14 2.74 6.33 -51.93 -0.33 2.41 16 19 C -0.09 -1.61 5.44 -91.77 -0.50 -2.11 16 20 H 0.15 2.56 7.68 -51.93 -0.40 2.16 16 21 C -0.06 -0.85 5.47 -104.62 -0.57 -1.42 16 22 C -0.10 -1.32 9.74 -39.58 -0.39 -1.70 16 23 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 24 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 25 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 26 C -0.11 -1.50 8.73 -39.58 -0.35 -1.85 16 27 C 0.23 4.48 4.96 -26.73 -0.13 4.35 16 28 F -0.15 -3.29 17.13 2.25 0.04 -3.26 16 29 F -0.16 -2.89 14.59 2.25 0.03 -2.86 16 30 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.13 3.05 6.42 -51.93 -0.33 2.72 16 34 H 0.08 1.82 7.36 -51.93 -0.38 1.44 16 35 H 0.28 6.62 8.32 -40.82 -0.34 6.28 16 36 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.13 1.80 6.06 -52.48 -0.32 1.48 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -30.91 352.50 -6.88 -37.79 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -4.17 Total: 7.78 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: -2.66 Total: 11.13 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.21 Total: -32.16 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.62 Total: -37.87 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.07 Total: -6.11 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.91 -6.88 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346195954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.171 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds