Wall clock time and date at job start Tue Mar 31 2020 22:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34235 * 116.99836 * 2 1 4 4 O 1.20824 * 119.99840 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00118 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.47244 * 179.97438 * 5 3 2 7 7 C 1.37090 * 120.00134 * 270.00251 * 6 5 3 8 8 H 1.08000 * 120.00107 * 198.59444 * 7 6 5 9 9 C 1.38949 * 119.99887 * 18.59345 * 7 6 5 10 10 N 1.31405 * 120.00224 * 5.63818 * 9 7 6 11 11 Si 1.86801 * 119.99894 * 185.63617 * 9 7 6 12 12 H 1.48499 * 109.47247 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47267 * 120.00200 * 11 9 7 14 14 H 1.48498 * 109.47183 * 240.00165 * 11 9 7 15 15 C 1.34777 * 119.99680 * 90.00188 * 6 5 3 16 16 O 1.21296 * 120.00183 * 4.91804 * 15 6 5 17 17 C 1.50700 * 119.99825 * 184.92352 * 15 6 5 18 18 H 1.09003 * 115.55129 * 331.07591 * 17 15 6 19 19 C 1.53001 * 117.49786 * 185.40163 * 17 15 6 20 20 H 1.08996 * 117.49913 * 0.02562 * 19 17 15 21 21 C 1.50701 * 117.49542 * 144.99704 * 19 17 15 22 22 C 1.38238 * 120.00043 * 279.50089 * 21 19 17 23 23 C 1.38238 * 120.00162 * 179.81069 * 22 21 19 24 24 C 1.38234 * 119.99656 * 0.39814 * 23 22 21 25 25 C 1.38233 * 120.00178 * 359.85587 * 24 23 22 26 26 C 1.38233 * 120.00215 * 99.77661 * 21 19 17 27 27 C 1.52997 * 60.00055 * 252.48619 * 19 17 15 28 28 F 1.39904 * 117.49676 * 107.49277 * 27 19 17 29 29 F 1.39895 * 117.49925 * 252.51036 * 27 19 17 30 30 H 1.09003 * 109.47113 * 59.99975 * 1 2 3 31 31 H 1.09006 * 109.46541 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47540 * 299.99719 * 1 2 3 33 33 H 1.08997 * 109.47210 * 60.00180 * 5 3 2 34 34 H 1.08998 * 109.47355 * 300.00054 * 5 3 2 35 35 H 0.97005 * 119.99980 * 184.99934 * 10 9 7 36 36 H 1.08008 * 119.99949 * 359.97438 * 22 21 19 37 37 H 1.07994 * 119.99883 * 180.22897 * 23 22 21 38 38 H 1.08003 * 119.99627 * 179.83292 * 24 23 22 39 39 H 1.08001 * 119.99956 * 179.97438 * 25 24 23 40 40 H 1.08004 * 119.99876 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.1764 3.3365 -1.1877 8 1 4.7566 4.2471 -1.2125 9 6 3.6273 2.8305 -2.3595 10 7 2.8307 1.7864 -2.3145 11 14 4.0217 3.6344 -3.9989 12 1 4.9361 4.7837 -3.7795 13 1 4.6771 2.6444 -4.8909 14 1 2.7658 4.1140 -4.6299 15 6 4.1722 3.3269 1.1668 16 8 4.0871 2.7236 2.2156 17 6 4.4908 4.7998 1.1684 18 1 5.0192 5.1675 0.2887 19 6 4.8206 5.4497 2.5136 20 1 4.8075 4.8119 3.3974 21 6 5.8513 6.5492 2.5211 22 6 7.1973 6.2349 2.5065 23 6 8.1427 7.2434 2.5094 24 6 7.7421 8.5662 2.5352 25 6 6.3961 8.8804 2.5551 26 6 5.4507 7.8719 2.5483 27 6 3.4825 5.7405 1.8312 28 9 2.3347 5.1675 2.3895 29 9 3.3093 7.0066 1.2620 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 3.9564 0.7808 -0.8891 34 1 3.9557 0.7811 0.8908 35 1 2.5054 1.3887 -3.1373 36 1 7.5104 5.2013 2.4902 37 1 9.1943 6.9979 2.4943 38 1 8.4807 9.3541 2.5401 39 1 6.0831 9.9139 2.5756 40 1 4.3990 8.1175 2.5637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346195954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:27 Heat of formation + Delta-G solvation = -152.328105 kcal Electronic energy + Delta-G solvation = -30232.616297 eV Core-core repulsion = 25649.887708 eV Total energy + Delta-G solvation = -4582.728589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.87231 -48.53443 -41.45253 -40.63273 -39.92701 -37.62091 -36.75534 -36.46609 -33.56278 -31.77925 -31.70939 -30.42905 -28.03333 -26.98749 -25.16153 -24.31638 -23.32362 -22.18919 -21.69255 -21.21094 -19.65286 -19.01208 -18.42084 -17.99541 -17.68052 -17.44089 -17.33186 -17.05356 -16.92674 -16.18975 -16.04832 -15.85323 -15.47654 -15.33194 -15.19461 -14.80791 -14.75727 -14.54085 -14.27200 -14.11070 -14.07064 -13.86158 -13.51611 -13.27693 -13.14061 -12.89890 -12.64456 -12.57704 -12.24312 -12.18849 -12.03640 -11.83677 -11.60067 -11.54249 -11.09870 -10.99627 -10.70759 -10.00782 -9.81031 -9.67538 -8.42323 -6.08413 0.34247 0.51158 1.13170 1.44160 1.49675 1.57727 1.75342 1.78825 1.96298 2.27780 2.50482 2.50883 2.86670 3.09127 3.21804 3.34735 3.51449 3.86266 4.00495 4.11564 4.17696 4.28219 4.33262 4.34500 4.40632 4.49089 4.56577 4.57096 4.69777 4.70327 4.75985 4.82645 5.04284 5.17304 5.32016 5.53612 5.57560 5.62583 5.63855 5.70835 6.10046 6.21415 6.95685 7.21564 7.31817 7.68538 8.61719 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.004134 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.906733 B = 6771.127785 C = 7728.261063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.374 6.374 3 C 0.493 3.507 4 O -0.546 6.546 5 C 0.156 3.844 6 N -0.428 5.428 7 C -0.347 4.347 8 H 0.117 0.883 9 C -0.001 4.001 10 N -0.901 5.901 11 Si 0.999 3.001 12 H -0.253 1.253 13 H -0.268 1.268 14 H -0.292 1.292 15 C 0.483 3.517 16 O -0.614 6.614 17 C -0.150 4.150 18 H 0.153 0.847 19 C -0.055 4.055 20 H 0.143 0.857 21 C -0.080 4.080 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.124 4.124 27 C 0.214 3.786 28 F -0.169 7.169 29 F -0.151 7.151 30 H 0.043 0.957 31 H 0.135 0.865 32 H 0.048 0.952 33 H 0.132 0.868 34 H 0.090 0.910 35 H 0.275 0.725 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.970 7.199 4.371 11.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.291 6.291 3 C 0.336 3.664 4 O -0.435 6.435 5 C 0.030 3.970 6 N -0.144 5.144 7 C -0.474 4.474 8 H 0.134 0.866 9 C -0.202 4.202 10 N -0.541 5.541 11 Si 0.822 3.178 12 H -0.177 1.177 13 H -0.193 1.193 14 H -0.218 1.218 15 C 0.273 3.727 16 O -0.501 6.501 17 C -0.172 4.172 18 H 0.171 0.829 19 C -0.074 4.074 20 H 0.160 0.840 21 C -0.080 4.080 22 C -0.129 4.129 23 C -0.137 4.137 24 C -0.133 4.133 25 C -0.140 4.140 26 C -0.142 4.142 27 C 0.177 3.823 28 F -0.150 7.150 29 F -0.131 7.131 30 H 0.062 0.938 31 H 0.153 0.847 32 H 0.067 0.933 33 H 0.149 0.851 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.164 0.836 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.497 7.108 4.709 11.353 hybrid contribution -1.157 0.080 -1.070 1.578 sum 6.340 7.188 3.638 10.252 Atomic orbital electron populations 1.23266 0.76374 1.04777 1.01008 1.86412 1.23894 1.33718 1.85105 1.23870 0.92482 0.80748 0.69258 1.90496 1.67406 1.37748 1.47819 1.20617 0.87235 0.84900 1.04205 1.43474 1.56406 1.08947 1.05608 1.20183 1.32215 1.11044 0.83911 0.86598 1.26130 0.93641 0.96995 1.03412 1.69631 1.31303 1.23595 1.29602 0.84767 0.77708 0.78750 0.76546 1.17677 1.19284 1.21845 1.19293 0.82444 0.87636 0.83359 1.90528 1.59004 1.68573 1.32029 1.23526 1.00822 0.92673 1.00152 0.82921 1.22310 0.89970 0.97966 0.97196 0.83958 1.18909 0.93098 0.92163 1.03856 1.21107 0.91488 1.00849 0.99420 1.21455 1.00359 0.92574 0.99342 1.21588 0.96230 0.97146 0.98298 1.21428 0.93204 0.99736 0.99622 1.21384 1.00929 0.92088 0.99793 1.19959 0.81281 0.80425 1.00653 1.93020 1.52647 1.83973 1.85352 1.92960 1.96102 1.38795 1.85237 0.93794 0.84745 0.93330 0.85080 0.89206 0.91429 0.85347 0.83161 0.82919 0.83622 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 10.56 113.37 1.20 2.57 16 2 O -0.37 -16.34 10.57 -51.46 -0.54 -16.88 16 3 C 0.49 25.11 5.82 71.23 0.41 25.52 16 4 O -0.55 -31.59 15.76 21.97 0.35 -31.25 16 5 C 0.16 7.57 5.29 85.63 0.45 8.02 16 6 N -0.43 -21.56 2.11 -639.61 -1.35 -22.91 16 7 C -0.35 -17.08 9.19 84.04 0.77 -16.31 16 8 H 0.12 5.27 5.92 -2.91 -0.02 5.25 16 9 C 0.00 -0.04 5.25 84.93 0.45 0.40 16 10 N -0.90 -45.90 8.17 21.66 0.18 -45.72 16 11 Si 1.00 38.86 29.56 68.60 2.03 40.89 16 12 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 13 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 14 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 15 C 0.48 23.62 7.04 87.66 0.62 24.24 16 16 O -0.61 -32.05 15.83 -3.08 -0.05 -32.10 16 17 C -0.15 -6.13 5.12 -11.54 -0.06 -6.19 16 18 H 0.15 5.85 6.33 -2.39 -0.02 5.83 16 19 C -0.05 -1.90 5.44 -11.54 -0.06 -1.97 16 20 H 0.14 5.05 7.68 -2.39 -0.02 5.03 16 21 C -0.08 -2.29 5.47 -19.87 -0.11 -2.40 16 22 C -0.11 -2.72 9.74 22.27 0.22 -2.50 16 23 C -0.12 -2.29 10.05 22.27 0.22 -2.06 16 24 C -0.11 -2.00 10.05 22.27 0.22 -1.78 16 25 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 26 C -0.12 -3.24 8.73 22.27 0.19 -3.05 16 27 C 0.21 8.59 4.96 30.59 0.15 8.74 16 28 F -0.17 -7.85 17.13 44.97 0.77 -7.08 16 29 F -0.15 -5.56 14.59 44.97 0.66 -4.91 16 30 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 31 H 0.13 3.30 8.14 -2.38 -0.02 3.28 16 32 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 33 H 0.13 6.29 6.42 -2.39 -0.02 6.27 16 34 H 0.09 4.12 7.36 -2.39 -0.02 4.11 16 35 H 0.28 13.36 8.32 -92.70 -0.77 12.59 16 36 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 37 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 39 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.12 3.32 6.06 -2.91 -0.02 3.31 16 Total: -1.00 -68.18 352.50 8.03 -60.15 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 1.10 Total: 28.83 kcal Atomic # 6 Polarization: 26.09 SS G_CDS: 4.90 Total: 30.99 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -1.17 Total: -68.64 kcal Atomic # 8 Polarization: -79.98 SS G_CDS: -0.25 Total: -80.23 kcal Atomic # 9 Polarization: -13.42 SS G_CDS: 1.43 Total: -11.99 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -68.18 8.03 -60.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346195954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.182 kcal (2) G-P(sol) polarization free energy of solvation -68.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds