Wall clock time and date at job start Tue Mar 31 2020 22:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99723 * 2 1 4 4 O 1.20826 * 119.99986 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00091 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47314 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00190 * 268.95033 * 6 5 3 8 8 H 1.07999 * 119.99958 * 142.34442 * 7 6 5 9 9 C 1.38946 * 119.99848 * 322.34286 * 7 6 5 10 10 N 1.31411 * 119.99938 * 157.85578 * 9 7 6 11 11 Si 1.86802 * 120.00434 * 337.86029 * 9 7 6 12 12 H 1.48500 * 109.47327 * 95.37975 * 11 9 7 13 13 H 1.48490 * 109.47303 * 215.38234 * 11 9 7 14 14 H 1.48500 * 109.46901 * 335.38247 * 11 9 7 15 15 C 1.34775 * 119.99637 * 88.95202 * 6 5 3 16 16 O 1.21294 * 120.00239 * 359.97438 * 15 6 5 17 17 C 1.50708 * 119.99975 * 180.02562 * 15 6 5 18 18 H 1.09002 * 115.55722 * 34.30406 * 17 15 6 19 19 C 1.52995 * 117.50113 * 179.97438 * 17 15 6 20 20 H 1.09005 * 117.51969 * 0.02562 * 19 17 15 21 21 C 1.50694 * 117.49933 * 214.97622 * 19 17 15 22 22 C 1.38240 * 119.99842 * 165.32402 * 21 19 17 23 23 C 1.38231 * 120.00103 * 179.72742 * 22 21 19 24 24 C 1.38241 * 119.99701 * 0.28083 * 23 22 21 25 25 C 1.38233 * 120.00226 * 359.97438 * 24 23 22 26 26 C 1.38232 * 120.00196 * 345.54149 * 21 19 17 27 27 C 1.53002 * 117.49704 * 248.62088 * 17 15 6 28 28 F 1.39900 * 117.49702 * 145.02042 * 27 17 15 29 29 F 1.39899 * 117.51907 * 359.97438 * 27 17 15 30 30 H 1.09009 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47190 * 299.99692 * 1 2 3 32 32 H 1.08996 * 109.47638 * 60.00119 * 1 2 3 33 33 H 1.08999 * 109.47233 * 59.99619 * 5 3 2 34 34 H 1.09000 * 109.47009 * 299.99927 * 5 3 2 35 35 H 0.97001 * 120.00409 * 180.02562 * 10 9 7 36 36 H 1.08001 * 120.00032 * 0.02562 * 22 21 19 37 37 H 1.08000 * 120.00515 * 180.25678 * 23 22 21 38 38 H 1.08003 * 119.99809 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.00048 * 179.97438 * 25 24 23 40 40 H 1.07993 * 120.00111 * 0.06118 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9815 2.6799 -0.0011 7 6 4.1963 3.3308 -1.1884 8 1 3.9085 4.3661 -1.2964 9 6 4.7843 2.6585 -2.2528 10 7 4.6078 3.0909 -3.4811 11 14 5.8257 1.1400 -1.9378 12 1 4.9899 -0.0763 -2.1028 13 1 6.9512 1.1022 -2.9056 14 1 6.3636 1.1870 -0.5545 15 6 4.1525 3.3324 1.1657 16 8 3.9621 2.7566 2.2162 17 6 4.5792 4.7778 1.1653 18 1 4.1947 5.3814 0.3431 19 6 4.7557 5.4627 2.5219 20 1 4.5636 4.8681 3.4151 21 6 4.3850 6.9201 2.6190 22 6 4.2304 7.5129 3.8583 23 6 3.8960 8.8512 3.9474 24 6 3.7103 9.5953 2.7972 25 6 3.8597 9.0012 1.5580 26 6 4.1951 7.6631 1.4689 27 6 5.9827 5.1002 1.6822 28 9 6.6742 6.1472 1.0636 29 9 6.7718 4.0310 2.1197 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.9556 0.7811 -0.8908 34 1 3.9563 0.7807 0.8892 35 1 5.0179 2.6214 -4.2242 36 1 4.3758 6.9317 4.7568 37 1 3.7793 9.3154 4.9155 38 1 3.4486 10.6408 2.8668 39 1 3.7142 9.5825 0.6595 40 1 4.3114 7.1989 0.5008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346195955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:30 Heat of formation + Delta-G solvation = -135.757972 kcal Electronic energy + Delta-G solvation = -30023.277702 eV Core-core repulsion = 25441.267648 eV Total energy + Delta-G solvation = -4582.010054 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.31669 -46.97819 -40.16056 -39.53757 -38.70519 -36.24656 -35.51628 -34.89224 -32.18400 -30.95473 -30.48891 -29.10865 -26.83131 -25.33098 -24.01133 -22.79067 -22.53601 -20.98936 -20.44811 -19.25962 -18.00847 -17.70251 -17.28415 -16.77092 -16.47529 -15.98173 -15.78482 -15.53955 -15.51596 -15.31490 -15.03271 -14.54301 -14.06036 -13.80421 -13.59062 -13.44627 -13.26866 -13.20416 -13.12418 -13.01732 -12.82121 -12.68935 -12.58149 -12.02850 -11.87299 -11.65160 -11.27331 -11.13275 -11.09395 -10.79591 -10.55312 -10.40022 -10.19734 -10.01462 -9.84170 -9.48568 -9.00823 -8.87945 -8.55605 -8.16014 -6.67081 -4.30265 1.25248 1.44397 2.66966 2.78513 2.90216 3.11530 3.14358 3.19132 3.26033 3.74559 3.92757 3.97123 4.08807 4.54999 4.58144 4.75392 4.92410 4.99218 5.03307 5.14307 5.19968 5.32585 5.39074 5.40760 5.49543 5.54046 5.60139 5.68654 5.74194 5.82985 5.95264 5.98786 6.09007 6.13351 6.47189 6.54060 6.64494 6.77508 6.96972 7.00526 7.78925 7.99270 8.31172 8.66393 9.00945 9.29862 10.42609 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.004268 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.753618 B = 6559.628526 C = 7465.883194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.450 3.550 4 O -0.487 6.487 5 C 0.108 3.892 6 N -0.435 5.435 7 C -0.352 4.352 8 H 0.110 0.890 9 C 0.071 3.929 10 N -0.843 5.843 11 Si 0.857 3.143 12 H -0.267 1.267 13 H -0.277 1.277 14 H -0.253 1.253 15 C 0.520 3.480 16 O -0.578 6.578 17 C -0.138 4.138 18 H 0.152 0.848 19 C -0.093 4.093 20 H 0.146 0.854 21 C -0.057 4.057 22 C -0.103 4.103 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.103 4.103 27 C 0.232 3.768 28 F -0.154 7.154 29 F -0.152 7.152 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.279 0.721 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.691 4.340 8.521 9.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.291 3.709 4 O -0.372 6.372 5 C -0.017 4.017 6 N -0.154 5.154 7 C -0.478 4.478 8 H 0.127 0.873 9 C -0.138 4.138 10 N -0.477 5.477 11 Si 0.683 3.317 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.176 1.176 15 C 0.309 3.691 16 O -0.461 6.461 17 C -0.160 4.160 18 H 0.170 0.830 19 C -0.113 4.113 20 H 0.164 0.836 21 C -0.057 4.057 22 C -0.121 4.121 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.135 4.135 26 C -0.121 4.121 27 C 0.195 3.805 28 F -0.134 7.134 29 F -0.132 7.132 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.937 4.341 8.783 9.987 hybrid contribution 0.459 -0.733 -0.439 0.970 sum -1.478 3.608 8.343 9.209 Atomic orbital electron populations 1.23149 0.77388 1.02906 1.02312 1.86516 1.22776 1.34353 1.84905 1.24597 0.92666 0.81294 0.72385 1.90622 1.66525 1.36221 1.43820 1.21388 0.87189 0.87801 1.05316 1.43209 1.57313 1.08544 1.06338 1.19070 1.42022 0.99288 0.87458 0.87297 1.25323 0.95745 0.98138 0.94624 1.69754 1.38971 1.40605 0.98350 0.87208 0.81485 0.82563 0.80442 1.19390 1.20332 1.17621 1.18917 0.80126 0.86600 0.83415 1.90582 1.55794 1.68273 1.31481 1.23576 0.95748 0.97882 0.98783 0.83043 1.22489 0.96181 0.94569 0.98060 0.83585 1.18916 1.00534 0.92275 0.93958 1.20959 0.99295 0.95077 0.96759 1.21080 1.00555 0.94038 0.98480 1.21168 1.00242 0.99783 0.92685 1.21134 0.99742 0.94777 0.97817 1.21211 0.98047 0.94304 0.98515 1.19795 0.81303 0.79570 0.99848 1.93021 1.81365 1.55921 1.83082 1.93040 1.76298 1.54460 1.89422 0.88661 0.92292 0.92125 0.87380 0.86705 0.91043 0.85744 0.86003 0.86165 0.85762 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.72 10.57 -39.26 -0.41 -7.14 16 3 C 0.45 9.74 8.02 36.00 0.29 10.03 16 4 O -0.49 -11.76 16.17 -18.75 -0.30 -12.07 16 5 C 0.11 2.36 4.76 -5.20 -0.02 2.33 16 6 N -0.43 -10.35 1.66 -116.10 -0.19 -10.54 16 7 C -0.35 -8.90 9.09 -14.93 -0.14 -9.04 16 8 H 0.11 2.87 6.77 -52.49 -0.36 2.51 16 9 C 0.07 1.80 5.30 -17.47 -0.09 1.71 16 10 N -0.84 -22.33 13.96 55.50 0.77 -21.56 16 11 Si 0.86 18.96 25.04 -169.99 -4.26 14.71 16 12 H -0.27 -5.55 6.67 56.52 0.38 -5.17 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.25 -5.63 7.11 56.52 0.40 -5.22 16 15 C 0.52 11.97 7.04 -10.98 -0.08 11.89 16 16 O -0.58 -13.86 15.86 5.55 0.09 -13.77 16 17 C -0.14 -2.73 4.59 -91.77 -0.42 -3.15 16 18 H 0.15 2.91 5.00 -51.93 -0.26 2.65 16 19 C -0.09 -1.57 5.54 -91.75 -0.51 -2.08 16 20 H 0.15 2.42 7.67 -51.93 -0.40 2.02 16 21 C -0.06 -0.85 5.43 -104.63 -0.57 -1.41 16 22 C -0.10 -1.31 9.74 -39.58 -0.39 -1.69 16 23 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 24 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 25 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 26 C -0.10 -1.50 8.49 -39.58 -0.34 -1.83 16 27 C 0.23 4.34 5.08 -26.71 -0.14 4.20 16 28 F -0.15 -2.79 16.44 2.25 0.04 -2.75 16 29 F -0.15 -3.05 17.13 2.25 0.04 -3.01 16 30 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 31 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 33 H 0.11 2.33 3.32 -51.93 -0.17 2.16 16 34 H 0.12 2.31 7.45 -51.93 -0.39 1.92 16 35 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.13 1.92 6.16 -52.49 -0.32 1.60 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -30.54 352.82 -5.45 -35.99 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -4.01 Total: 7.63 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -2.52 Total: 7.20 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.58 Total: -32.10 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.63 Total: -32.98 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.08 Total: -5.76 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.26 Total: 14.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.54 -5.45 -35.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346195955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.768 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds