Wall clock time and date at job start Tue Mar 31 2020 22:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99723 * 2 1 4 4 O 1.20826 * 119.99986 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00091 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47314 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00190 * 268.95033 * 6 5 3 8 8 H 1.07999 * 119.99958 * 142.34442 * 7 6 5 9 9 C 1.38946 * 119.99848 * 322.34286 * 7 6 5 10 10 N 1.31411 * 119.99938 * 157.85578 * 9 7 6 11 11 Si 1.86802 * 120.00434 * 337.86029 * 9 7 6 12 12 H 1.48500 * 109.47327 * 95.37975 * 11 9 7 13 13 H 1.48490 * 109.47303 * 215.38234 * 11 9 7 14 14 H 1.48500 * 109.46901 * 335.38247 * 11 9 7 15 15 C 1.34775 * 119.99637 * 88.95202 * 6 5 3 16 16 O 1.21294 * 120.00239 * 359.97438 * 15 6 5 17 17 C 1.50708 * 119.99975 * 180.02562 * 15 6 5 18 18 H 1.09002 * 115.55722 * 34.30406 * 17 15 6 19 19 C 1.52995 * 117.50113 * 179.97438 * 17 15 6 20 20 H 1.09005 * 117.51969 * 0.02562 * 19 17 15 21 21 C 1.50694 * 117.49933 * 214.97622 * 19 17 15 22 22 C 1.38240 * 119.99842 * 165.32402 * 21 19 17 23 23 C 1.38231 * 120.00103 * 179.72742 * 22 21 19 24 24 C 1.38241 * 119.99701 * 0.28083 * 23 22 21 25 25 C 1.38233 * 120.00226 * 359.97438 * 24 23 22 26 26 C 1.38232 * 120.00196 * 345.54149 * 21 19 17 27 27 C 1.53002 * 117.49704 * 248.62088 * 17 15 6 28 28 F 1.39900 * 117.49702 * 145.02042 * 27 17 15 29 29 F 1.39899 * 117.51907 * 359.97438 * 27 17 15 30 30 H 1.09009 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47190 * 299.99692 * 1 2 3 32 32 H 1.08996 * 109.47638 * 60.00119 * 1 2 3 33 33 H 1.08999 * 109.47233 * 59.99619 * 5 3 2 34 34 H 1.09000 * 109.47009 * 299.99927 * 5 3 2 35 35 H 0.97001 * 120.00409 * 180.02562 * 10 9 7 36 36 H 1.08001 * 120.00032 * 0.02562 * 22 21 19 37 37 H 1.08000 * 120.00515 * 180.25678 * 23 22 21 38 38 H 1.08003 * 119.99809 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.00048 * 179.97438 * 25 24 23 40 40 H 1.07993 * 120.00111 * 0.06118 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9815 2.6799 -0.0011 7 6 4.1963 3.3308 -1.1884 8 1 3.9085 4.3661 -1.2964 9 6 4.7843 2.6585 -2.2528 10 7 4.6078 3.0909 -3.4811 11 14 5.8257 1.1400 -1.9378 12 1 4.9899 -0.0763 -2.1028 13 1 6.9512 1.1022 -2.9056 14 1 6.3636 1.1870 -0.5545 15 6 4.1525 3.3324 1.1657 16 8 3.9621 2.7566 2.2162 17 6 4.5792 4.7778 1.1653 18 1 4.1947 5.3814 0.3431 19 6 4.7557 5.4627 2.5219 20 1 4.5636 4.8681 3.4151 21 6 4.3850 6.9201 2.6190 22 6 4.2304 7.5129 3.8583 23 6 3.8960 8.8512 3.9474 24 6 3.7103 9.5953 2.7972 25 6 3.8597 9.0012 1.5580 26 6 4.1951 7.6631 1.4689 27 6 5.9827 5.1002 1.6822 28 9 6.6742 6.1472 1.0636 29 9 6.7718 4.0310 2.1197 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.9556 0.7811 -0.8908 34 1 3.9563 0.7807 0.8892 35 1 5.0179 2.6214 -4.2242 36 1 4.3758 6.9317 4.7568 37 1 3.7793 9.3154 4.9155 38 1 3.4486 10.6408 2.8668 39 1 3.7142 9.5825 0.6595 40 1 4.3114 7.1989 0.5008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346195955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:30 Heat of formation + Delta-G solvation = -151.909052 kcal Electronic energy + Delta-G solvation = -30023.978066 eV Core-core repulsion = 25441.267648 eV Total energy + Delta-G solvation = -4582.710418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.83703 -48.50481 -41.83785 -40.91841 -40.07332 -37.81180 -37.07304 -36.63070 -34.12607 -31.95262 -31.60203 -30.66866 -28.15864 -27.21329 -25.38661 -24.24217 -23.54010 -22.53050 -21.74672 -21.02273 -19.62042 -19.29115 -18.89606 -18.28714 -17.91414 -17.48346 -17.28108 -17.14822 -17.04861 -16.98761 -16.13826 -15.83907 -15.54891 -15.44043 -15.10941 -14.84317 -14.76757 -14.63856 -14.58424 -14.36551 -14.24645 -14.16154 -13.88689 -13.58292 -13.41105 -13.01178 -12.95451 -12.54604 -12.34404 -12.15093 -12.00728 -11.84440 -11.80585 -11.78124 -11.39185 -11.20838 -10.81696 -10.05726 -9.83809 -9.64234 -8.62135 -6.29031 0.21373 0.48756 0.99621 1.08670 1.15784 1.33733 1.40708 1.60097 1.91486 2.07930 2.15948 2.38014 2.83401 2.93784 3.12635 3.22416 3.48584 3.74269 3.78129 3.86821 3.95204 4.09605 4.11001 4.17114 4.28817 4.29585 4.30260 4.48819 4.52815 4.63378 4.64107 4.78070 5.01895 5.09729 5.14208 5.24863 5.53954 5.60036 5.61386 5.88015 6.00517 6.07504 6.66735 6.74695 7.09414 7.42376 8.51336 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.004268 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.753618 B = 6559.628526 C = 7465.883194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.453 3.547 4 O -0.522 6.522 5 C 0.099 3.901 6 N -0.446 5.446 7 C -0.354 4.354 8 H 0.083 0.917 9 C 0.034 3.966 10 N -0.882 5.882 11 Si 0.905 3.095 12 H -0.240 1.240 13 H -0.273 1.273 14 H -0.256 1.256 15 C 0.515 3.485 16 O -0.591 6.591 17 C -0.161 4.161 18 H 0.147 0.853 19 C -0.058 4.058 20 H 0.151 0.849 21 C -0.083 4.083 22 C -0.106 4.106 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.126 4.126 26 C -0.124 4.124 27 C 0.226 3.774 28 F -0.152 7.152 29 F -0.162 7.162 30 H 0.142 0.858 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.285 0.715 36 H 0.142 0.858 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.140 0.860 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.077 4.428 10.226 11.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.295 3.705 4 O -0.409 6.409 5 C -0.026 4.026 6 N -0.165 5.165 7 C -0.481 4.481 8 H 0.101 0.899 9 C -0.172 4.172 10 N -0.516 5.516 11 Si 0.728 3.272 12 H -0.166 1.166 13 H -0.199 1.199 14 H -0.180 1.180 15 C 0.305 3.695 16 O -0.476 6.476 17 C -0.182 4.182 18 H 0.164 0.836 19 C -0.078 4.078 20 H 0.168 0.832 21 C -0.083 4.083 22 C -0.124 4.124 23 C -0.137 4.137 24 C -0.131 4.131 25 C -0.143 4.143 26 C -0.142 4.142 27 C 0.188 3.812 28 F -0.133 7.133 29 F -0.142 7.142 30 H 0.160 0.840 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.149 0.851 35 H 0.095 0.905 36 H 0.160 0.840 37 H 0.174 0.826 38 H 0.171 0.829 39 H 0.158 0.842 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.335 4.401 10.486 11.609 hybrid contribution 0.464 -0.695 -0.935 1.254 sum -1.870 3.707 9.551 10.414 Atomic orbital electron populations 1.23578 0.74706 1.05960 1.02273 1.86485 1.25257 1.32158 1.84053 1.24467 0.92641 0.81744 0.71653 1.90606 1.67196 1.37519 1.45616 1.21516 0.87892 0.86895 1.06254 1.43276 1.57918 1.09344 1.05984 1.18895 1.42342 0.98690 0.88210 0.89893 1.25885 0.96270 1.00923 0.94130 1.69817 1.40192 1.42453 0.99185 0.86435 0.80309 0.80448 0.79999 1.16569 1.19884 1.17995 1.19389 0.79392 0.87648 0.83041 1.90546 1.56369 1.68999 1.31677 1.23537 0.97154 0.96419 1.01097 0.83587 1.22469 0.93164 0.95901 0.96242 0.83171 1.18918 1.03033 0.91096 0.95280 1.21242 0.98675 0.96212 0.96296 1.21507 0.98875 0.93230 1.00127 1.21604 0.98256 1.01337 0.91864 1.21398 0.99479 0.93932 0.99528 1.21229 0.99560 0.95616 0.97802 1.19934 0.81008 0.79496 1.00721 1.93014 1.81312 1.55677 1.83271 1.93010 1.76570 1.55136 1.89488 0.84032 0.92163 0.92454 0.86965 0.85069 0.90509 0.83970 0.82586 0.82853 0.84184 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.92 16 2 O -0.36 -12.72 10.57 -51.43 -0.54 -13.26 16 3 C 0.45 19.53 8.02 71.23 0.57 20.10 16 4 O -0.52 -25.61 16.17 21.96 0.36 -25.25 16 5 C 0.10 4.30 4.76 85.63 0.41 4.71 16 6 N -0.45 -21.70 1.66 -639.61 -1.06 -22.76 16 7 C -0.35 -18.63 9.09 84.04 0.76 -17.87 16 8 H 0.08 4.68 6.77 -2.91 -0.02 4.66 16 9 C 0.03 1.77 5.30 84.93 0.45 2.22 16 10 N -0.88 -47.83 13.96 21.66 0.30 -47.52 16 11 Si 0.91 38.77 25.04 68.60 1.72 40.49 16 12 H -0.24 -9.24 6.67 99.48 0.66 -8.57 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 14 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 15 C 0.52 24.33 7.04 87.66 0.62 24.95 16 16 O -0.59 -28.68 15.86 -3.07 -0.05 -28.73 16 17 C -0.16 -6.61 4.59 -11.54 -0.05 -6.67 16 18 H 0.15 6.10 5.00 -2.39 -0.01 6.09 16 19 C -0.06 -1.99 5.54 -11.53 -0.06 -2.06 16 20 H 0.15 4.96 7.67 -2.38 -0.02 4.94 16 21 C -0.08 -2.46 5.43 -19.87 -0.11 -2.57 16 22 C -0.11 -2.48 9.74 22.27 0.22 -2.27 16 23 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 24 C -0.11 -2.13 10.05 22.27 0.22 -1.90 16 25 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 26 C -0.12 -3.66 8.49 22.27 0.19 -3.47 16 27 C 0.23 8.67 5.08 30.61 0.16 8.82 16 28 F -0.15 -5.71 16.44 44.97 0.74 -4.97 16 29 F -0.16 -6.59 17.13 44.97 0.77 -5.82 16 30 H 0.14 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 32 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 33 H 0.11 4.73 3.32 -2.39 -0.01 4.72 16 34 H 0.13 5.19 7.45 -2.39 -0.02 5.18 16 35 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 40 H 0.11 3.56 6.16 -2.91 -0.02 3.54 16 Total: -1.00 -67.56 352.82 8.31 -59.25 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 1.06 Total: 27.40 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 5.02 Total: 21.18 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -0.76 Total: -70.29 kcal Atomic # 8 Polarization: -67.01 SS G_CDS: -0.24 Total: -67.25 kcal Atomic # 9 Polarization: -12.30 SS G_CDS: 1.51 Total: -10.79 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 1.72 Total: 40.49 kcal Total: -67.56 8.31 -59.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346195955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.658 kcal (2) G-P(sol) polarization free energy of solvation -67.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds