Wall clock time and date at job start Tue Mar 31 2020 22:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99753 * 2 1 4 4 O 1.20816 * 120.00471 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99696 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47017 * 180.02562 * 5 3 2 7 7 C 1.37105 * 119.99782 * 269.99834 * 6 5 3 8 8 H 1.08000 * 119.99531 * 196.05103 * 7 6 5 9 9 C 1.38941 * 119.99799 * 16.04988 * 7 6 5 10 10 N 1.31414 * 120.00322 * 5.89697 * 9 7 6 11 11 Si 1.86800 * 119.99940 * 185.89644 * 9 7 6 12 12 H 1.48505 * 109.47460 * 89.99819 * 11 9 7 13 13 H 1.48503 * 109.47557 * 210.00089 * 11 9 7 14 14 H 1.48508 * 109.47097 * 329.99972 * 11 9 7 15 15 C 1.34773 * 120.00282 * 89.99763 * 6 5 3 16 16 O 1.21296 * 119.99834 * 4.86832 * 15 6 5 17 17 C 1.50704 * 120.00125 * 184.86900 * 15 6 5 18 18 H 1.09004 * 115.56099 * 334.73436 * 17 15 6 19 19 C 1.53001 * 117.49923 * 189.04795 * 17 15 6 20 20 H 1.09007 * 117.50116 * 144.99331 * 19 17 15 21 21 C 1.50701 * 117.49752 * 0.02562 * 19 17 15 22 22 C 1.38235 * 119.99995 * 255.58317 * 21 19 17 23 23 C 1.38234 * 120.00250 * 180.27479 * 22 21 19 24 24 C 1.38240 * 119.99613 * 359.49706 * 23 22 21 25 25 C 1.38228 * 119.99769 * 0.50598 * 24 23 22 26 26 C 1.38230 * 120.00615 * 359.74332 * 25 24 23 27 27 C 1.52993 * 60.03307 * 252.49719 * 19 17 15 28 28 F 1.39900 * 117.50087 * 107.49980 * 27 19 17 29 29 F 1.39901 * 117.50272 * 252.52560 * 27 19 17 30 30 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47203 * 300.00157 * 1 2 3 32 32 H 1.08992 * 109.47447 * 60.00065 * 1 2 3 33 33 H 1.08995 * 109.47294 * 59.99790 * 5 3 2 34 34 H 1.09002 * 109.47154 * 299.99750 * 5 3 2 35 35 H 0.97001 * 119.99842 * 185.00794 * 10 9 7 36 36 H 1.08000 * 119.99950 * 0.02562 * 22 21 19 37 37 H 1.08001 * 120.00205 * 179.72105 * 23 22 21 38 38 H 1.08001 * 119.99615 * 180.23203 * 24 23 22 39 39 H 1.08004 * 119.99492 * 179.72562 * 25 24 23 40 40 H 1.07996 * 120.00245 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9816 2.6797 0.0002 7 6 4.1755 3.3378 -1.1869 8 1 4.7208 4.2699 -1.2047 9 6 3.6706 2.8056 -2.3668 10 7 2.9096 1.7348 -2.3319 11 14 4.0734 3.6121 -4.0028 12 1 5.3153 3.0153 -4.5566 13 1 2.9528 3.3927 -4.9523 14 1 4.2723 5.0698 -3.8004 15 6 4.1732 3.3252 1.1676 16 8 4.0880 2.7209 2.2158 17 6 4.4931 4.7979 1.1708 18 1 4.9657 5.1785 0.2652 19 6 4.9071 5.4281 2.5021 20 1 5.6524 6.2230 2.4725 21 6 4.9643 4.5285 3.7098 22 6 3.9652 4.5871 4.6633 23 6 4.0206 3.7660 5.7739 24 6 5.0698 2.8788 5.9258 25 6 6.0689 2.8202 4.9723 26 6 6.0162 3.6450 3.8643 27 6 3.5290 5.7294 1.9097 28 9 2.4179 5.1489 2.5307 29 9 3.3220 7.0039 1.3710 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.9557 0.7809 -0.8907 34 1 3.9564 0.7806 0.8892 35 1 2.6168 1.3207 -3.1588 36 1 3.1434 5.2774 4.5425 37 1 3.2423 3.8150 6.5211 38 1 5.1111 2.2346 6.7917 39 1 6.8909 2.1302 5.0933 40 1 6.7970 3.5994 3.1196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346195956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:33 Heat of formation + Delta-G solvation = -128.311228 kcal Electronic energy + Delta-G solvation = -31001.587338 eV Core-core repulsion = 26419.900199 eV Total energy + Delta-G solvation = -4581.687139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.27538 -46.92616 -39.69275 -39.07128 -38.10367 -35.89668 -34.97800 -34.54077 -31.64480 -30.44378 -30.26665 -28.64966 -26.44196 -25.09616 -23.59229 -22.84592 -21.97970 -20.69644 -20.03379 -19.27933 -17.88846 -17.36324 -16.52775 -16.29051 -16.09926 -15.97449 -15.59405 -15.30534 -15.17697 -14.65703 -14.46477 -14.17074 -13.98149 -13.68539 -13.44716 -13.38535 -13.08768 -12.93039 -12.78625 -12.54389 -12.39033 -12.34045 -12.02799 -11.51858 -11.37403 -11.27151 -10.98645 -10.90071 -10.76635 -10.64280 -10.50552 -10.34917 -9.81226 -9.71250 -9.49293 -9.04459 -8.88921 -8.42172 -8.12637 -7.93553 -6.53310 -4.12998 1.78846 1.89902 2.87916 3.10399 3.14034 3.15863 3.22575 3.64823 3.73533 4.01214 4.14809 4.25423 4.27293 4.70795 4.90879 4.98569 5.10278 5.23906 5.36033 5.37353 5.51865 5.71440 5.72336 5.79899 5.82932 5.97356 6.01417 6.03127 6.13077 6.26813 6.38796 6.45989 6.46214 6.78799 6.87500 6.91864 7.00729 7.18378 7.41414 7.44641 7.57275 8.12229 8.87178 9.13370 9.23538 9.61588 10.49073 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.005142 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.524491 B = 5444.112369 C = 6476.289633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.491 3.509 4 O -0.508 6.508 5 C 0.159 3.841 6 N -0.422 5.422 7 C -0.327 4.327 8 H 0.104 0.896 9 C 0.038 3.962 10 N -0.882 5.882 11 Si 0.934 3.066 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.269 1.269 15 C 0.492 3.508 16 O -0.565 6.565 17 C -0.145 4.145 18 H 0.146 0.854 19 C -0.097 4.097 20 H 0.140 0.860 21 C -0.023 4.023 22 C -0.102 4.102 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.120 4.120 26 C -0.077 4.077 27 C 0.226 3.774 28 F -0.145 7.145 29 F -0.162 7.162 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.275 0.725 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.256 1.704 7.289 8.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.292 6.292 3 C 0.333 3.667 4 O -0.394 6.394 5 C 0.034 3.966 6 N -0.140 5.140 7 C -0.454 4.454 8 H 0.121 0.879 9 C -0.165 4.165 10 N -0.522 5.522 11 Si 0.761 3.239 12 H -0.201 1.201 13 H -0.208 1.208 14 H -0.193 1.193 15 C 0.279 3.721 16 O -0.449 6.449 17 C -0.167 4.167 18 H 0.164 0.836 19 C -0.117 4.117 20 H 0.157 0.843 21 C -0.023 4.023 22 C -0.120 4.120 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.138 4.138 26 C -0.095 4.095 27 C 0.188 3.812 28 F -0.125 7.125 29 F -0.142 7.142 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.153 0.847 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.769 1.630 7.635 8.669 hybrid contribution -0.614 0.535 -1.382 1.604 sum 3.156 2.164 6.253 7.331 Atomic orbital electron populations 1.22910 0.78885 1.01711 1.01518 1.86449 1.21487 1.35509 1.85713 1.23834 0.92209 0.80490 0.70214 1.90522 1.66596 1.36388 1.45882 1.20614 0.87229 0.84776 1.04011 1.43266 1.57008 1.08646 1.05073 1.19751 1.33773 1.08291 0.83563 0.87868 1.25237 0.94317 0.96670 1.00298 1.69616 1.32768 1.21040 1.28800 0.85791 0.77991 0.79472 0.80665 1.20110 1.20758 1.19316 1.18695 0.83216 0.86184 0.83978 1.90661 1.56500 1.67053 1.30681 1.23700 0.99852 0.95781 0.97368 0.83644 1.22439 0.95146 1.00421 0.93649 0.84268 1.18505 0.95440 0.95893 0.92486 1.20922 0.97398 0.99677 0.93981 1.20917 0.98256 0.96914 0.97913 1.20964 0.95112 0.98992 0.99233 1.20891 0.98964 0.99136 0.94790 1.20593 0.97618 0.94591 0.96744 1.19725 0.82290 0.79854 0.99292 1.93043 1.54261 1.83141 1.82068 1.93007 1.95842 1.39086 1.86294 0.89657 0.93255 0.92761 0.84734 0.90214 0.91430 0.86535 0.86829 0.86953 0.86741 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.56 101.05 1.07 1.86 16 2 O -0.37 -8.22 10.57 -39.25 -0.41 -8.63 16 3 C 0.49 12.26 5.91 36.01 0.21 12.47 16 4 O -0.51 -14.30 15.92 -18.74 -0.30 -14.60 16 5 C 0.16 3.77 5.28 -5.19 -0.03 3.74 16 6 N -0.42 -10.25 2.11 -116.09 -0.25 -10.50 16 7 C -0.33 -7.89 9.25 -14.93 -0.14 -8.03 16 8 H 0.10 2.29 5.81 -52.49 -0.31 1.99 16 9 C 0.04 0.92 5.26 -17.47 -0.09 0.83 16 10 N -0.88 -22.19 8.25 55.50 0.46 -21.73 16 11 Si 0.93 19.01 29.56 -169.99 -5.02 13.98 16 12 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 13 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 14 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 15 C 0.49 11.34 6.97 -10.99 -0.08 11.26 16 16 O -0.57 -13.65 12.65 5.54 0.07 -13.58 16 17 C -0.15 -2.81 5.48 -91.73 -0.50 -3.31 16 18 H 0.15 2.57 6.20 -51.93 -0.32 2.25 16 19 C -0.10 -1.58 5.90 -91.77 -0.54 -2.12 16 20 H 0.14 1.75 8.14 -51.93 -0.42 1.32 16 21 C -0.02 -0.40 3.32 -104.62 -0.35 -0.74 16 22 C -0.10 -1.74 8.65 -39.58 -0.34 -2.08 16 23 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 24 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 25 C -0.12 -1.79 10.05 -39.59 -0.40 -2.19 16 26 C -0.08 -1.26 8.31 -39.58 -0.33 -1.59 16 27 C 0.23 4.31 4.94 -26.70 -0.13 4.17 16 28 F -0.14 -3.15 14.42 2.25 0.03 -3.11 16 29 F -0.16 -2.92 17.60 2.25 0.04 -2.88 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 32 H 0.05 1.01 8.13 -51.93 -0.42 0.58 16 33 H 0.14 3.19 6.22 -51.93 -0.32 2.86 16 34 H 0.08 1.79 7.36 -51.93 -0.38 1.41 16 35 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 36 H 0.12 1.97 6.46 -52.49 -0.34 1.63 16 37 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -30.99 347.53 -6.78 -37.76 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.19 Total: 8.28 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: -2.44 Total: 9.77 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.21 Total: -32.23 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.64 Total: -36.82 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.07 Total: -5.99 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.99 -6.78 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346195956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.547 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds