Wall clock time and date at job start Tue Mar 31 2020 22:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99753 * 2 1 4 4 O 1.20816 * 120.00471 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99696 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47017 * 180.02562 * 5 3 2 7 7 C 1.37105 * 119.99782 * 269.99834 * 6 5 3 8 8 H 1.08000 * 119.99531 * 196.05103 * 7 6 5 9 9 C 1.38941 * 119.99799 * 16.04988 * 7 6 5 10 10 N 1.31414 * 120.00322 * 5.89697 * 9 7 6 11 11 Si 1.86800 * 119.99940 * 185.89644 * 9 7 6 12 12 H 1.48505 * 109.47460 * 89.99819 * 11 9 7 13 13 H 1.48503 * 109.47557 * 210.00089 * 11 9 7 14 14 H 1.48508 * 109.47097 * 329.99972 * 11 9 7 15 15 C 1.34773 * 120.00282 * 89.99763 * 6 5 3 16 16 O 1.21296 * 119.99834 * 4.86832 * 15 6 5 17 17 C 1.50704 * 120.00125 * 184.86900 * 15 6 5 18 18 H 1.09004 * 115.56099 * 334.73436 * 17 15 6 19 19 C 1.53001 * 117.49923 * 189.04795 * 17 15 6 20 20 H 1.09007 * 117.50116 * 144.99331 * 19 17 15 21 21 C 1.50701 * 117.49752 * 0.02562 * 19 17 15 22 22 C 1.38235 * 119.99995 * 255.58317 * 21 19 17 23 23 C 1.38234 * 120.00250 * 180.27479 * 22 21 19 24 24 C 1.38240 * 119.99613 * 359.49706 * 23 22 21 25 25 C 1.38228 * 119.99769 * 0.50598 * 24 23 22 26 26 C 1.38230 * 120.00615 * 359.74332 * 25 24 23 27 27 C 1.52993 * 60.03307 * 252.49719 * 19 17 15 28 28 F 1.39900 * 117.50087 * 107.49980 * 27 19 17 29 29 F 1.39901 * 117.50272 * 252.52560 * 27 19 17 30 30 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47203 * 300.00157 * 1 2 3 32 32 H 1.08992 * 109.47447 * 60.00065 * 1 2 3 33 33 H 1.08995 * 109.47294 * 59.99790 * 5 3 2 34 34 H 1.09002 * 109.47154 * 299.99750 * 5 3 2 35 35 H 0.97001 * 119.99842 * 185.00794 * 10 9 7 36 36 H 1.08000 * 119.99950 * 0.02562 * 22 21 19 37 37 H 1.08001 * 120.00205 * 179.72105 * 23 22 21 38 38 H 1.08001 * 119.99615 * 180.23203 * 24 23 22 39 39 H 1.08004 * 119.99492 * 179.72562 * 25 24 23 40 40 H 1.07996 * 120.00245 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9816 2.6797 0.0002 7 6 4.1755 3.3378 -1.1869 8 1 4.7208 4.2699 -1.2047 9 6 3.6706 2.8056 -2.3668 10 7 2.9096 1.7348 -2.3319 11 14 4.0734 3.6121 -4.0028 12 1 5.3153 3.0153 -4.5566 13 1 2.9528 3.3927 -4.9523 14 1 4.2723 5.0698 -3.8004 15 6 4.1732 3.3252 1.1676 16 8 4.0880 2.7209 2.2158 17 6 4.4931 4.7979 1.1708 18 1 4.9657 5.1785 0.2652 19 6 4.9071 5.4281 2.5021 20 1 5.6524 6.2230 2.4725 21 6 4.9643 4.5285 3.7098 22 6 3.9652 4.5871 4.6633 23 6 4.0206 3.7660 5.7739 24 6 5.0698 2.8788 5.9258 25 6 6.0689 2.8202 4.9723 26 6 6.0162 3.6450 3.8643 27 6 3.5290 5.7294 1.9097 28 9 2.4179 5.1489 2.5307 29 9 3.3220 7.0039 1.3710 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.9557 0.7809 -0.8907 34 1 3.9564 0.7806 0.8892 35 1 2.6168 1.3207 -3.1588 36 1 3.1434 5.2774 4.5425 37 1 3.2423 3.8150 6.5211 38 1 5.1111 2.2346 6.7917 39 1 6.8909 2.1302 5.0933 40 1 6.7970 3.5994 3.1196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346195956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:33 Heat of formation + Delta-G solvation = -143.717044 kcal Electronic energy + Delta-G solvation = -31002.255385 eV Core-core repulsion = 26419.900199 eV Total energy + Delta-G solvation = -4582.355186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.78145 -48.45353 -41.43042 -40.66688 -39.60193 -37.53576 -36.70848 -36.32216 -33.47090 -31.62978 -31.56085 -30.38993 -28.02938 -26.87356 -25.05147 -24.27857 -23.23999 -22.18658 -21.69439 -21.00633 -19.41374 -19.00818 -18.39426 -17.90625 -17.59685 -17.32227 -17.27437 -16.98512 -16.91679 -16.14831 -16.01041 -15.56717 -15.44166 -15.23364 -15.07021 -14.85400 -14.61399 -14.48544 -14.23625 -14.09750 -13.98501 -13.74555 -13.38853 -13.23927 -13.06899 -12.88627 -12.56237 -12.51052 -12.21610 -12.12676 -11.96983 -11.71827 -11.58409 -11.51994 -11.03372 -10.93879 -10.53952 -9.94675 -9.60880 -9.29596 -8.34459 -5.99190 0.57504 0.69103 1.24733 1.46819 1.53586 1.58375 1.79827 1.81514 2.02544 2.31378 2.60406 2.64810 2.90084 3.17302 3.36265 3.49811 3.59428 3.92552 4.12915 4.19321 4.25727 4.29975 4.34116 4.38155 4.39300 4.53551 4.59968 4.63979 4.71059 4.81154 4.85646 4.93042 5.21261 5.28048 5.37277 5.61552 5.69033 5.73251 5.73849 5.77706 6.27718 6.28911 7.04252 7.24538 7.43383 7.81621 8.67988 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.005142 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.524491 B = 5444.112369 C = 6476.289633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.376 6.376 3 C 0.492 3.508 4 O -0.549 6.549 5 C 0.160 3.840 6 N -0.437 5.437 7 C -0.341 4.341 8 H 0.119 0.881 9 C -0.007 4.007 10 N -0.908 5.908 11 Si 0.998 3.002 12 H -0.263 1.263 13 H -0.294 1.294 14 H -0.261 1.261 15 C 0.486 3.514 16 O -0.581 6.581 17 C -0.162 4.162 18 H 0.162 0.838 19 C -0.060 4.060 20 H 0.183 0.817 21 C -0.045 4.045 22 C -0.123 4.123 23 C -0.132 4.132 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.091 4.091 27 C 0.208 3.792 28 F -0.167 7.167 29 F -0.157 7.157 30 H 0.134 0.866 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.132 0.868 34 H 0.085 0.915 35 H 0.272 0.728 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 1.854 7.656 9.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.293 6.293 3 C 0.336 3.664 4 O -0.438 6.438 5 C 0.034 3.966 6 N -0.156 5.156 7 C -0.468 4.468 8 H 0.137 0.863 9 C -0.206 4.206 10 N -0.549 5.549 11 Si 0.822 3.178 12 H -0.188 1.188 13 H -0.221 1.221 14 H -0.185 1.185 15 C 0.274 3.726 16 O -0.466 6.466 17 C -0.183 4.183 18 H 0.179 0.821 19 C -0.078 4.078 20 H 0.200 0.800 21 C -0.045 4.045 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.109 4.109 27 C 0.171 3.829 28 F -0.147 7.147 29 F -0.138 7.138 30 H 0.152 0.848 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.150 0.850 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.068 1.769 8.019 9.650 hybrid contribution -1.089 0.395 -1.398 1.815 sum 3.979 2.164 6.621 8.022 Atomic orbital electron populations 1.23253 0.76502 1.04749 1.00922 1.86421 1.23820 1.33962 1.85063 1.24073 0.92700 0.80598 0.69065 1.90488 1.67528 1.37769 1.47970 1.20604 0.86744 0.85282 1.03948 1.43490 1.57525 1.08877 1.05695 1.20183 1.33977 1.08929 0.83726 0.86333 1.26089 0.94139 0.97134 1.03271 1.69712 1.33778 1.22276 1.29147 0.84825 0.77570 0.78963 0.76444 1.18788 1.22058 1.18468 1.19267 0.82253 0.87643 0.83398 1.90632 1.56871 1.67966 1.31091 1.23712 1.01180 0.93527 0.99891 0.82084 1.22641 0.93607 1.00038 0.91557 0.79996 1.18694 0.96058 0.96847 0.92868 1.21047 0.97489 1.00514 0.95077 1.21242 0.99178 0.96689 0.97911 1.21354 0.94384 0.98733 1.00024 1.21274 0.99759 0.99014 0.94302 1.20805 0.97715 0.94766 0.97576 1.20013 0.82734 0.79886 1.00303 1.92992 1.55614 1.83643 1.82482 1.93008 1.95874 1.38504 1.86373 0.84782 0.93401 0.93854 0.85048 0.89682 0.91762 0.87291 0.84946 0.84064 0.84271 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.38 10.56 113.37 1.20 2.58 16 2 O -0.38 -16.54 10.57 -51.38 -0.54 -17.08 16 3 C 0.49 25.02 5.91 71.24 0.42 25.44 16 4 O -0.55 -31.65 15.92 21.99 0.35 -31.30 16 5 C 0.16 7.71 5.28 85.63 0.45 8.16 16 6 N -0.44 -21.41 2.11 -639.60 -1.35 -22.76 16 7 C -0.34 -16.43 9.25 84.04 0.78 -15.65 16 8 H 0.12 5.15 5.81 -2.91 -0.02 5.13 16 9 C -0.01 -0.32 5.26 84.92 0.45 0.13 16 10 N -0.91 -46.25 8.25 21.66 0.18 -46.07 16 11 Si 1.00 38.57 29.56 68.60 2.03 40.60 16 12 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 13 H -0.29 -11.86 7.11 99.48 0.71 -11.16 16 14 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 15 C 0.49 22.41 6.97 87.66 0.61 23.02 16 16 O -0.58 -28.16 12.65 -3.08 -0.04 -28.20 16 17 C -0.16 -6.11 5.48 -11.51 -0.06 -6.17 16 18 H 0.16 5.45 6.20 -2.39 -0.01 5.43 16 19 C -0.06 -1.84 5.90 -11.54 -0.07 -1.91 16 20 H 0.18 3.96 8.14 -2.38 -0.02 3.94 16 21 C -0.04 -1.48 3.32 -19.87 -0.07 -1.54 16 22 C -0.12 -4.15 8.65 22.27 0.19 -3.96 16 23 C -0.13 -3.93 10.05 22.27 0.22 -3.70 16 24 C -0.13 -3.44 10.05 22.27 0.22 -3.21 16 25 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 26 C -0.09 -2.80 8.31 22.27 0.18 -2.62 16 27 C 0.21 7.82 4.94 30.62 0.15 7.97 16 28 F -0.17 -7.39 14.42 44.97 0.65 -6.74 16 29 F -0.16 -5.52 17.60 44.97 0.79 -4.73 16 30 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 31 H 0.05 1.68 8.13 -2.38 -0.02 1.66 16 32 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 33 H 0.13 6.36 6.22 -2.39 -0.01 6.35 16 34 H 0.09 3.90 7.36 -2.39 -0.02 3.89 16 35 H 0.27 13.34 8.32 -92.71 -0.77 12.57 16 36 H 0.11 3.73 6.46 -2.91 -0.02 3.71 16 37 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 38 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 39 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 40 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -67.78 347.53 8.07 -59.71 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 1.10 Total: 31.31 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 4.91 Total: 25.25 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.17 Total: -68.83 kcal Atomic # 8 Polarization: -76.34 SS G_CDS: -0.23 Total: -76.57 kcal Atomic # 9 Polarization: -12.91 SS G_CDS: 1.44 Total: -11.47 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -67.78 8.07 -59.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346195956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.003 kcal (2) G-P(sol) polarization free energy of solvation -67.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds