Wall clock time and date at job start Tue Mar 31 2020 22:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.06821 * 2 1 4 4 C 1.40428 * 107.86169 * 179.90447 * 3 2 1 5 5 N 1.39992 * 125.97582 * 180.14339 * 4 3 2 6 6 S 1.65604 * 119.99959 * 180.23225 * 5 4 3 7 7 O 1.42103 * 106.40007 * 178.54198 * 6 5 4 8 8 O 1.42095 * 106.40272 * 311.46670 * 6 5 4 9 9 C 1.76205 * 107.21594 * 65.00443 * 6 5 4 10 10 C 1.39872 * 126.03893 * 90.02506 * 9 6 5 11 11 C 1.50698 * 125.89730 * 359.97438 * 10 9 6 12 12 N 1.30835 * 108.19901 * 179.97438 * 10 9 6 13 13 N 1.40082 * 108.20719 * 0.02562 * 12 10 9 14 14 H 0.97004 * 126.03530 * 179.97438 * 13 12 10 15 15 C 1.34942 * 107.92587 * 359.75735 * 13 12 10 16 16 C 1.50705 * 126.12899 * 180.24276 * 15 13 12 17 17 N 1.31220 * 108.04909 * 0.36555 * 4 3 2 18 18 N 1.34960 * 126.06853 * 180.31556 * 2 1 3 19 19 C 1.46498 * 125.97191 * 359.96192 * 18 2 1 20 20 C 1.50707 * 109.47366 * 90.00120 * 19 18 2 21 21 H 1.08005 * 119.99361 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00150 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00047 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 119.99784 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46938 * 60.00555 * 24 22 20 26 26 H 1.48503 * 109.47106 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47611 * 300.00311 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68518 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68599 * 1 2 3 31 31 H 1.08003 * 126.06901 * 0.04432 * 3 2 1 32 32 H 0.96999 * 120.00238 * 0.24132 * 5 4 3 33 33 H 1.09001 * 109.46644 * 90.00428 * 11 10 9 34 34 H 1.09006 * 109.47173 * 210.00044 * 11 10 9 35 35 H 1.08990 * 109.47455 * 330.00549 * 11 10 9 36 36 H 1.08997 * 109.47165 * 270.17917 * 16 15 13 37 37 H 1.08998 * 109.46950 * 30.17609 * 16 15 13 38 38 H 1.08996 * 109.47355 * 150.17329 * 16 15 13 39 39 H 1.09006 * 109.47531 * 210.00084 * 19 18 2 40 40 H 1.09008 * 109.47462 * 330.00263 * 19 18 2 41 41 H 0.96996 * 119.99839 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 0.0022 5 7 4.7724 1.4737 0.0058 6 16 6.2831 0.7953 0.0022 7 8 7.2074 1.8743 -0.0276 8 8 6.2797 -0.1973 1.0190 9 6 6.4672 -0.0600 -1.5273 10 6 6.9734 0.4778 -2.7151 11 6 7.4564 1.8920 -2.9094 12 7 6.9551 -0.4590 -3.6282 13 7 6.4353 -1.6240 -3.0497 14 1 6.3074 -2.4752 -3.4970 15 6 6.1485 -1.3545 -1.7589 16 6 5.5733 -2.3211 -0.7559 17 7 3.6337 -0.6577 -0.0044 18 7 2.3016 -1.0909 -0.0060 19 6 1.8499 -2.4845 -0.0129 20 6 1.6942 -2.9551 -1.4361 21 1 1.9098 -2.2831 -2.2537 22 6 1.2766 -4.2435 -1.6944 23 7 1.0136 -5.0616 -0.6988 24 14 1.0831 -4.8266 -3.4584 25 1 2.3884 -4.7253 -4.1593 26 1 0.6253 -6.2392 -3.4654 27 1 0.0812 -3.9787 -4.1530 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9720 2.1212 0.0007 32 1 4.6741 2.4387 0.0105 33 1 8.5210 1.9467 -2.6818 34 1 7.2900 2.1940 -3.9435 35 1 6.9079 2.5581 -2.2436 36 1 4.4849 -2.2720 -0.7868 37 1 5.8984 -3.3327 -0.9986 38 1 5.9208 -2.0577 0.2431 39 1 2.5847 -3.1072 0.4974 40 1 0.8914 -2.5584 0.5011 41 1 0.7195 -5.9678 -0.8805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348908806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:15 Heat of formation + Delta-G solvation = 70.490816 kcal Electronic energy + Delta-G solvation = -28617.592394 eV Core-core repulsion = 24662.951847 eV Total energy + Delta-G solvation = -3954.640547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.22183 -40.65748 -37.05118 -35.62820 -35.32651 -33.44279 -33.30379 -31.72614 -31.32265 -30.85904 -28.00628 -26.89761 -26.82724 -26.37645 -23.21150 -21.58787 -20.77171 -20.19239 -19.89193 -18.45407 -17.40548 -17.31965 -16.81663 -16.42474 -15.88377 -15.40284 -15.10663 -14.68007 -14.53136 -14.31688 -13.78724 -13.30784 -13.21437 -13.10438 -12.83484 -12.65708 -12.62214 -12.45491 -12.15945 -12.07650 -11.96066 -11.80101 -11.74307 -11.69755 -11.49874 -11.29276 -10.96318 -10.93601 -10.92036 -10.41567 -10.38191 -9.78367 -9.76434 -9.34673 -8.93247 -8.78822 -8.18854 -7.69246 -6.40344 -4.49427 0.63872 1.81838 2.31949 2.56674 2.83728 2.98644 3.09109 3.15971 3.18586 3.29877 3.63495 4.01890 4.15480 4.43173 4.66154 4.91513 4.95048 5.03883 5.20772 5.23305 5.45483 5.63293 5.68028 5.71377 5.86310 5.93041 6.03967 6.09084 6.13420 6.21839 6.37562 6.49682 6.53192 6.66340 6.82583 6.89656 7.10493 7.29099 7.39707 7.50909 7.59528 7.72223 7.85971 8.39044 8.58082 9.17924 10.66453 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012142 B = 0.005048 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.550903 B = 5545.711839 C = 6819.447143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.111 3.889 3 C -0.309 4.309 4 C 0.292 3.708 5 N -1.017 6.017 6 S 2.727 3.273 7 O -0.963 6.963 8 O -0.940 6.940 9 C -0.828 4.828 10 C 0.161 3.839 11 C -0.085 4.085 12 N -0.303 5.303 13 N -0.469 5.469 14 H 0.441 0.559 15 C 0.261 3.739 16 C -0.145 4.145 17 N -0.322 5.322 18 N -0.316 5.316 19 C 0.255 3.745 20 C -0.542 4.542 21 H 0.063 0.937 22 C 0.070 3.930 23 N -0.886 5.886 24 Si 0.903 3.097 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.139 0.861 32 H 0.429 0.571 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.069 0.931 38 H 0.121 0.879 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 10.761 -0.397 11.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.021 4.021 3 C -0.342 4.342 4 C 0.036 3.964 5 N -0.769 5.769 6 S 2.817 3.183 7 O -0.953 6.953 8 O -0.930 6.930 9 C -0.928 4.928 10 C -0.010 4.010 11 C -0.144 4.144 12 N -0.123 5.123 13 N -0.173 5.173 14 H 0.286 0.714 15 C 0.124 3.876 16 C -0.203 4.203 17 N -0.153 5.153 18 N -0.098 5.098 19 C 0.138 3.862 20 C -0.581 4.581 21 H 0.082 0.918 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.730 3.270 25 H -0.202 1.202 26 H -0.209 1.209 27 H -0.199 1.199 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.157 0.843 32 H 0.265 0.735 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.159 0.841 37 H 0.087 0.913 38 H 0.139 0.861 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.397 8.953 -0.938 11.044 hybrid contribution -1.162 0.136 -1.257 1.717 sum 5.235 9.090 -2.195 10.717 Atomic orbital electron populations 1.20428 0.87772 1.04053 1.02796 1.20912 0.94812 0.87027 0.99393 1.20575 0.89897 0.98931 1.24807 1.18564 0.86849 0.89873 1.01066 1.52693 1.20292 1.16206 1.87742 1.00757 0.71227 0.73005 0.73330 1.93558 1.59361 1.54656 1.87744 1.93542 1.85183 1.59842 1.54421 1.30791 1.32373 1.06771 1.22832 1.21819 0.93946 0.96275 0.88948 1.20432 1.02725 0.87834 1.03388 1.77229 1.21963 0.92060 1.21096 1.46698 1.49747 1.12597 1.08226 0.71372 1.21278 0.86472 0.93917 0.85890 1.21700 1.06208 0.94930 0.97486 1.77307 0.99711 1.07585 1.30657 1.49026 1.00771 1.07835 1.52129 1.19774 0.96391 0.71140 0.98896 1.21248 1.47713 0.97903 0.91227 0.91831 1.24891 0.94597 0.96097 0.97869 1.69897 1.44157 1.07087 1.31133 0.86482 0.78781 0.77890 0.83894 1.20204 1.20863 1.19940 0.90784 0.89724 0.90565 0.84294 0.73514 0.89279 0.90389 0.89580 0.84094 0.91264 0.86080 0.92545 0.92611 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 9.89 36.01 0.36 -0.95 16 2 C 0.11 1.97 6.92 -82.28 -0.57 1.40 16 3 C -0.31 -5.05 10.74 -39.82 -0.43 -5.48 16 4 C 0.29 5.16 7.72 -154.55 -1.19 3.96 16 5 N -1.02 -14.79 5.91 31.39 0.19 -14.61 16 6 S 2.73 43.78 5.47 -107.50 -0.59 43.19 16 7 O -0.96 -15.31 15.90 -57.17 -0.91 -16.22 16 8 O -0.94 -17.60 14.46 -57.17 -0.83 -18.43 16 9 C -0.83 -13.94 6.10 -40.01 -0.24 -14.19 16 10 C 0.16 2.58 7.21 -82.41 -0.59 1.98 16 11 C -0.09 -1.05 9.53 36.00 0.34 -0.70 16 12 N -0.30 -5.08 12.70 33.67 0.43 -4.65 16 13 N -0.47 -7.53 7.36 33.48 0.25 -7.28 16 14 H 0.44 5.87 8.96 -182.61 -1.64 4.23 16 15 C 0.26 4.49 7.07 -82.26 -0.58 3.91 16 16 C -0.15 -2.56 8.64 36.01 0.31 -2.25 16 17 N -0.32 -6.44 7.47 31.41 0.23 -6.21 16 18 N -0.32 -6.49 3.59 -58.32 -0.21 -6.69 16 19 C 0.26 5.78 5.29 -5.19 -0.03 5.75 16 20 C -0.54 -13.26 9.39 -34.44 -0.32 -13.58 16 21 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 22 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -22.92 13.29 55.43 0.74 -22.18 16 24 Si 0.90 19.57 29.54 -169.99 -5.02 14.55 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.33 7.71 -51.93 -0.40 0.93 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.43 4.58 8.96 -34.47 -0.31 4.27 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.97 6.88 -51.93 -0.36 0.62 16 36 H 0.14 2.86 5.11 -51.93 -0.27 2.59 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.12 2.20 5.54 -51.93 -0.29 1.92 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.06 1.27 7.65 -51.92 -0.40 0.87 16 41 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -31.09 354.80 -9.58 -40.67 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.16 Total: 11.02 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -3.05 Total: -18.50 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: 1.62 Total: -61.63 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.74 Total: -34.65 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 16 Polarization: 43.78 SS G_CDS: -0.59 Total: 43.19 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.09 -9.58 -40.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348908806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.161 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds