Wall clock time and date at job start Tue Mar 31 2020 22:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.06821 * 2 1 4 4 C 1.40428 * 107.86169 * 179.90447 * 3 2 1 5 5 N 1.39992 * 125.97582 * 180.14339 * 4 3 2 6 6 S 1.65604 * 119.99959 * 180.23225 * 5 4 3 7 7 O 1.42103 * 106.40007 * 178.54198 * 6 5 4 8 8 O 1.42095 * 106.40272 * 311.46670 * 6 5 4 9 9 C 1.76205 * 107.21594 * 65.00443 * 6 5 4 10 10 C 1.39872 * 126.03893 * 90.02506 * 9 6 5 11 11 C 1.50698 * 125.89730 * 359.97438 * 10 9 6 12 12 N 1.30835 * 108.19901 * 179.97438 * 10 9 6 13 13 N 1.40082 * 108.20719 * 0.02562 * 12 10 9 14 14 H 0.97004 * 126.03530 * 179.97438 * 13 12 10 15 15 C 1.34942 * 107.92587 * 359.75735 * 13 12 10 16 16 C 1.50705 * 126.12899 * 180.24276 * 15 13 12 17 17 N 1.31220 * 108.04909 * 0.36555 * 4 3 2 18 18 N 1.34960 * 126.06853 * 180.31556 * 2 1 3 19 19 C 1.46498 * 125.97191 * 359.96192 * 18 2 1 20 20 C 1.50707 * 109.47366 * 90.00120 * 19 18 2 21 21 H 1.08005 * 119.99361 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00150 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00047 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 119.99784 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46938 * 60.00555 * 24 22 20 26 26 H 1.48503 * 109.47106 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47611 * 300.00311 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68518 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68599 * 1 2 3 31 31 H 1.08003 * 126.06901 * 0.04432 * 3 2 1 32 32 H 0.96999 * 120.00238 * 0.24132 * 5 4 3 33 33 H 1.09001 * 109.46644 * 90.00428 * 11 10 9 34 34 H 1.09006 * 109.47173 * 210.00044 * 11 10 9 35 35 H 1.08990 * 109.47455 * 330.00549 * 11 10 9 36 36 H 1.08997 * 109.47165 * 270.17917 * 16 15 13 37 37 H 1.08998 * 109.46950 * 30.17609 * 16 15 13 38 38 H 1.08996 * 109.47355 * 150.17329 * 16 15 13 39 39 H 1.09006 * 109.47531 * 210.00084 * 19 18 2 40 40 H 1.09008 * 109.47462 * 330.00263 * 19 18 2 41 41 H 0.96996 * 119.99839 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 0.0022 5 7 4.7724 1.4737 0.0058 6 16 6.2831 0.7953 0.0022 7 8 7.2074 1.8743 -0.0276 8 8 6.2797 -0.1973 1.0190 9 6 6.4672 -0.0600 -1.5273 10 6 6.9734 0.4778 -2.7151 11 6 7.4564 1.8920 -2.9094 12 7 6.9551 -0.4590 -3.6282 13 7 6.4353 -1.6240 -3.0497 14 1 6.3074 -2.4752 -3.4970 15 6 6.1485 -1.3545 -1.7589 16 6 5.5733 -2.3211 -0.7559 17 7 3.6337 -0.6577 -0.0044 18 7 2.3016 -1.0909 -0.0060 19 6 1.8499 -2.4845 -0.0129 20 6 1.6942 -2.9551 -1.4361 21 1 1.9098 -2.2831 -2.2537 22 6 1.2766 -4.2435 -1.6944 23 7 1.0136 -5.0616 -0.6988 24 14 1.0831 -4.8266 -3.4584 25 1 2.3884 -4.7253 -4.1593 26 1 0.6253 -6.2392 -3.4654 27 1 0.0812 -3.9787 -4.1530 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9720 2.1212 0.0007 32 1 4.6741 2.4387 0.0105 33 1 8.5210 1.9467 -2.6818 34 1 7.2900 2.1940 -3.9435 35 1 6.9079 2.5581 -2.2436 36 1 4.4849 -2.2720 -0.7868 37 1 5.8984 -3.3327 -0.9986 38 1 5.9208 -2.0577 0.2431 39 1 2.5847 -3.1072 0.4974 40 1 0.8914 -2.5584 0.5011 41 1 0.7195 -5.9678 -0.8805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348908806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:14 Heat of formation + Delta-G solvation = 48.984619 kcal Electronic energy + Delta-G solvation = -28618.524973 eV Core-core repulsion = 24662.951847 eV Total energy + Delta-G solvation = -3955.573126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.48988 -42.05263 -38.38009 -36.97590 -36.71756 -35.21760 -34.52899 -33.01818 -32.62557 -32.46798 -29.10727 -28.47581 -28.20926 -27.71993 -24.94581 -22.89379 -22.14922 -21.48260 -21.17594 -19.78845 -18.80507 -18.68568 -18.56520 -17.73932 -17.17670 -16.98967 -16.43026 -16.19374 -15.92535 -15.81736 -15.00139 -14.71284 -14.43525 -14.40129 -14.27542 -14.06320 -13.80514 -13.62511 -13.46065 -13.41276 -13.32716 -13.18890 -13.14309 -13.07738 -12.94361 -12.72509 -12.61842 -12.43189 -12.31137 -12.19804 -11.70702 -11.48025 -11.14605 -10.70450 -10.58357 -10.25435 -9.58493 -9.13158 -8.29620 -6.45610 -0.64808 0.49137 1.08307 1.16497 1.36184 1.39008 1.45478 1.55582 1.69924 1.96666 2.23983 2.36280 2.74374 3.00908 3.16659 3.45521 3.70658 3.71965 3.94287 4.00615 4.18971 4.47531 4.63620 4.69996 4.73522 4.77927 4.82385 4.87040 4.88399 4.99492 5.02587 5.05662 5.17418 5.33133 5.35706 5.44528 5.57877 5.84936 5.86078 6.06909 6.09237 6.31574 6.35202 6.67647 6.99787 7.25046 8.75610 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012142 B = 0.005048 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.550903 B = 5545.711839 C = 6819.447143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.098 3.902 3 C -0.300 4.300 4 C 0.286 3.714 5 N -1.002 6.002 6 S 2.743 3.257 7 O -0.959 6.959 8 O -0.969 6.969 9 C -0.837 4.837 10 C 0.157 3.843 11 C -0.091 4.091 12 N -0.317 5.317 13 N -0.466 5.466 14 H 0.450 0.550 15 C 0.248 3.752 16 C -0.139 4.139 17 N -0.349 5.349 18 N -0.341 5.341 19 C 0.274 3.726 20 C -0.543 4.543 21 H 0.051 0.949 22 C 0.031 3.969 23 N -0.914 5.914 24 Si 0.957 3.043 25 H -0.275 1.275 26 H -0.279 1.279 27 H -0.270 1.270 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.179 0.821 32 H 0.447 0.553 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.030 0.970 40 H 0.050 0.950 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 12.859 -1.357 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C -0.332 4.332 4 C 0.030 3.970 5 N -0.758 5.758 6 S 2.833 3.167 7 O -0.949 6.949 8 O -0.959 6.959 9 C -0.937 4.937 10 C -0.013 4.013 11 C -0.149 4.149 12 N -0.138 5.138 13 N -0.171 5.171 14 H 0.297 0.703 15 C 0.111 3.889 16 C -0.197 4.197 17 N -0.180 5.180 18 N -0.123 5.123 19 C 0.155 3.845 20 C -0.582 4.582 21 H 0.069 0.931 22 C -0.171 4.171 23 N -0.552 5.552 24 Si 0.782 3.218 25 H -0.201 1.201 26 H -0.204 1.204 27 H -0.195 1.195 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.196 0.804 32 H 0.287 0.713 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.239 11.092 -1.906 12.869 hybrid contribution -1.067 -0.415 -0.928 1.473 sum 5.172 10.677 -2.834 12.198 Atomic orbital electron populations 1.20529 0.85506 1.04496 1.04104 1.21640 0.96464 0.86491 0.98712 1.21005 0.88800 1.00334 1.23080 1.18891 0.88227 0.89681 1.00184 1.52473 1.18977 1.17044 1.87278 1.00214 0.71310 0.72512 0.72703 1.93555 1.59409 1.54295 1.87654 1.93514 1.85732 1.60965 1.55653 1.30950 1.32543 1.06804 1.23428 1.22424 0.93132 0.97573 0.88201 1.20666 1.03556 0.85689 1.04997 1.77208 1.22631 0.92365 1.21623 1.46749 1.49385 1.13084 1.07893 0.70341 1.21245 0.87167 0.94222 0.86280 1.21522 1.04650 0.96168 0.97407 1.77295 0.99746 1.09050 1.31904 1.48791 1.01557 1.07550 1.54445 1.19268 0.95175 0.72565 0.97533 1.21337 1.47212 0.97865 0.91758 0.93076 1.25541 0.94342 0.96186 1.01041 1.69982 1.45055 1.07373 1.32760 0.85631 0.78666 0.77565 0.79971 1.20076 1.20391 1.19515 0.88967 0.91898 0.87408 0.80413 0.71276 0.87941 0.88497 0.88547 0.86500 0.89689 0.87005 0.95166 0.93207 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.34 9.89 71.24 0.70 -1.64 16 2 C 0.10 3.35 6.92 41.39 0.29 3.63 16 3 C -0.30 -9.05 10.74 22.11 0.24 -8.81 16 4 C 0.29 9.75 7.72 133.39 1.03 10.78 16 5 N -1.00 -27.29 5.91 -54.61 -0.32 -27.61 16 6 S 2.74 85.17 5.47 -56.49 -0.31 84.86 16 7 O -0.96 -28.60 15.90 -128.00 -2.04 -30.63 16 8 O -0.97 -36.37 14.46 -128.00 -1.85 -38.22 16 9 C -0.84 -27.57 6.10 21.99 0.13 -27.43 16 10 C 0.16 4.79 7.21 43.10 0.31 5.10 16 11 C -0.09 -2.00 9.53 71.24 0.68 -1.32 16 12 N -0.32 -10.30 12.70 -47.39 -0.60 -10.90 16 13 N -0.47 -14.82 7.36 -48.00 -0.35 -15.18 16 14 H 0.45 11.91 8.96 -213.33 -1.91 10.00 16 15 C 0.25 8.55 7.07 41.41 0.29 8.84 16 16 C -0.14 -5.06 8.64 71.24 0.62 -4.44 16 17 N -0.35 -14.09 7.47 -54.54 -0.41 -14.49 16 18 N -0.34 -14.16 3.59 -338.42 -1.22 -15.38 16 19 C 0.27 12.82 5.29 85.64 0.45 13.28 16 20 C -0.54 -27.16 9.39 25.60 0.24 -26.92 16 21 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 22 C 0.03 1.53 5.46 84.65 0.46 2.00 16 23 N -0.91 -48.11 13.29 21.45 0.28 -47.83 16 24 Si 0.96 40.14 29.54 68.60 2.03 42.17 16 25 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.06 1.95 7.71 -2.39 -0.02 1.93 16 30 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.18 3.84 8.06 -2.91 -0.02 3.82 16 32 H 0.45 8.27 8.96 -96.75 -0.87 7.41 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.10 1.90 6.88 -2.39 -0.02 1.88 16 36 H 0.12 4.94 5.11 -2.39 -0.01 4.93 16 37 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.11 4.24 5.54 -2.39 -0.01 4.23 16 39 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.05 2.35 7.65 -2.38 -0.02 2.33 16 41 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -66.91 354.80 -1.01 -67.92 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -1.67 Total: 32.22 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 5.45 Total: -26.93 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -2.62 Total: -131.39 kcal Atomic # 8 Polarization: -64.96 SS G_CDS: -3.89 Total: -68.85 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 16 Polarization: 85.17 SS G_CDS: -0.31 Total: 84.86 kcal Total: -66.91 -1.01 -67.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348908806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.906 kcal (2) G-P(sol) polarization free energy of solvation -66.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds