Wall clock time and date at job start Tue Mar 31 2020 22:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 120.00396 * 2 1 4 4 H 1.48492 * 109.47397 * 275.41707 * 3 2 1 5 5 H 1.48507 * 109.46822 * 35.41335 * 3 2 1 6 6 H 1.48499 * 109.47326 * 155.41074 * 3 2 1 7 7 C 1.39937 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00113 * 341.73651 * 7 2 1 9 9 C 1.41431 * 119.99945 * 161.72903 * 7 2 1 10 10 C 1.40799 * 120.17994 * 330.18303 * 9 7 2 11 11 C 1.37710 * 120.03946 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.41365 * 359.78216 * 11 10 9 13 13 C 1.39896 * 120.35416 * 0.47111 * 12 11 10 14 14 C 1.47849 * 120.02656 * 179.78466 * 13 12 11 15 15 N 1.32104 * 126.67044 * 0.07149 * 14 13 12 16 16 C 1.34216 * 105.54127 * 180.13701 * 15 14 13 17 17 C 1.50702 * 126.18139 * 179.84703 * 16 15 14 18 18 C 1.50704 * 109.47331 * 269.71199 * 17 16 15 19 19 N 1.30267 * 119.38743 * 305.01077 * 18 17 16 20 20 C 1.35652 * 121.27039 * 179.97438 * 19 18 17 21 21 N 1.30738 * 120.01882 * 179.71903 * 20 19 18 22 22 N 1.38379 * 119.97162 * 359.97438 * 20 19 18 23 23 H 0.97004 * 120.58734 * 179.97438 * 22 20 19 24 24 C 1.38069 * 118.82411 * 359.97438 * 22 20 19 25 25 N 1.30237 * 120.60433 * 180.02562 * 24 22 20 26 26 N 1.36221 * 119.38655 * 124.97959 * 18 17 16 27 27 H 0.96997 * 120.03855 * 359.97438 * 26 18 17 28 28 N 1.30030 * 107.62466 * 359.58456 * 16 15 14 29 29 O 1.21287 * 110.48211 * 0.26563 * 28 16 15 30 30 C 1.39037 * 119.94737 * 359.51175 * 13 12 11 31 31 H 0.97002 * 119.99744 * 0.02562 * 1 2 3 32 32 H 1.07997 * 119.97741 * 0.02562 * 10 9 7 33 33 H 1.08004 * 119.79225 * 180.02562 * 11 10 9 34 34 H 1.07997 * 119.82269 * 180.26217 * 12 11 10 35 35 H 1.09004 * 109.47048 * 149.71804 * 17 16 15 36 36 H 1.09000 * 109.47463 * 29.71738 * 17 16 15 37 37 H 0.96997 * 119.99830 * 0.02562 * 21 20 19 38 38 H 0.96999 * 119.99652 * 359.97438 * 25 24 22 39 39 H 1.08002 * 120.19809 * 180.27460 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3755 2.1124 -1.3937 5 1 1.5017 2.6169 0.8114 6 1 3.5924 1.4097 0.5826 7 6 2.0079 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2940 9 6 3.3687 -1.2430 -0.3834 10 6 3.8624 -0.3110 -1.3163 11 6 5.1879 -0.3442 -1.6885 12 6 6.0439 -1.2873 -1.1477 13 6 5.5702 -2.2246 -0.2235 14 6 6.4902 -3.2321 0.3461 15 7 7.7769 -3.3662 0.0786 16 6 8.1918 -4.4055 0.8196 17 6 9.5913 -4.9627 0.8659 18 6 9.7383 -6.0391 -0.1785 19 7 8.9074 -7.0424 -0.1838 20 6 9.0042 -8.0320 -1.1065 21 7 8.1604 -9.0305 -1.0857 22 7 9.9997 -7.9871 -2.0666 23 1 10.0774 -8.6901 -2.7304 24 6 10.8805 -6.9238 -2.0629 25 7 11.8302 -6.8464 -2.9508 26 7 10.7371 -5.9446 -1.0999 27 1 11.3457 -5.1896 -1.0806 28 7 7.1693 -4.8410 1.4945 29 8 6.1819 -4.1842 1.2400 30 6 4.2348 -2.2044 0.1632 31 1 -0.4850 0.8401 -0.0004 32 1 3.2012 0.4303 -1.7401 33 1 5.5624 0.3729 -2.4040 34 1 7.0826 -1.3020 -1.4432 35 1 9.7817 -5.3853 1.8524 36 1 10.3069 -4.1646 0.6683 37 1 7.4647 -9.0635 -0.4106 38 1 11.9237 -7.5399 -3.6225 39 1 3.8658 -2.9233 0.8797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356054984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:53 Heat of formation + Delta-G solvation = 174.693412 kcal Electronic energy + Delta-G solvation = -27321.423673 eV Core-core repulsion = 23268.150490 eV Total energy + Delta-G solvation = -4053.273183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.27822 -41.64537 -38.09280 -37.09404 -36.48182 -35.52815 -34.05711 -32.98513 -31.87149 -31.62431 -30.61545 -30.48900 -29.38260 -25.47633 -24.41641 -24.07011 -23.08246 -22.52710 -20.82257 -20.59788 -20.05782 -19.68976 -18.15667 -17.90510 -17.34855 -16.84937 -16.63801 -16.28846 -16.06758 -15.91242 -15.05511 -14.78390 -14.46684 -14.36932 -13.82702 -13.57264 -12.97768 -12.97006 -12.86354 -12.35842 -12.22900 -12.12825 -11.91346 -11.53893 -11.14429 -11.11389 -11.03064 -10.88039 -10.65783 -10.54766 -10.13860 -10.08015 -9.92298 -9.84231 -9.33515 -9.16229 -8.86099 -7.99126 -7.81979 -7.10806 -4.67840 0.53971 0.99198 1.64609 1.68916 2.07162 2.38169 2.39773 2.82741 2.99656 3.05750 3.10913 3.16476 3.19940 3.33578 3.58641 3.83528 4.02483 4.29495 4.31347 4.68776 4.74092 4.90340 5.03842 5.15597 5.29830 5.60183 5.76365 5.82625 5.91549 5.97111 6.09986 6.19836 6.25111 6.46016 6.58920 6.66042 6.80018 7.07021 7.25295 7.38220 7.46379 7.59002 7.62029 7.74293 8.04958 8.15630 8.32536 8.38067 8.58704 9.90941 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.002385 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.327986 B =11735.837144 C =12022.511507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.083 3.917 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.242 1.242 7 C -0.441 4.441 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.212 4.212 11 C -0.082 4.082 12 C -0.187 4.187 13 C -0.015 4.015 14 C 0.266 3.734 15 N -0.490 5.490 16 C 0.162 3.838 17 C 0.028 3.972 18 C 0.454 3.546 19 N -0.560 5.560 20 C 0.551 3.449 21 N -0.724 5.724 22 N -0.685 5.685 23 H 0.428 0.572 24 C 0.620 3.380 25 N -0.761 5.761 26 N -0.636 5.636 27 H 0.438 0.562 28 N -0.366 5.366 29 O 0.084 5.916 30 C -0.158 4.158 31 H 0.288 0.712 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.362 0.638 38 H 0.359 0.641 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.941 -6.468 -0.100 20.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.165 1.165 7 C -0.469 4.469 8 H 0.113 0.887 9 C 0.082 3.918 10 C -0.232 4.232 11 C -0.100 4.100 12 C -0.208 4.208 13 C -0.017 4.017 14 C 0.051 3.949 15 N -0.224 5.224 16 C -0.113 4.113 17 C -0.013 4.013 18 C 0.175 3.825 19 N -0.293 5.293 20 C 0.178 3.822 21 N -0.358 5.358 22 N -0.334 5.334 23 H 0.269 0.731 24 C 0.251 3.749 25 N -0.404 5.404 26 N -0.274 5.274 27 H 0.279 0.721 28 N -0.073 5.073 29 O 0.023 5.977 30 C -0.180 4.180 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.181 0.819 38 H 0.179 0.821 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 18.946 -7.538 0.044 20.391 hybrid contribution 0.059 0.520 -0.458 0.696 sum 19.005 -7.018 -0.414 20.263 Atomic orbital electron populations 1.69683 1.08135 1.30581 1.33816 1.26181 0.94774 1.01814 0.90911 0.86343 0.81447 0.79723 0.79050 1.19400 1.21494 1.16514 1.19504 0.92777 0.96410 1.38230 0.88669 1.17582 0.93117 0.90876 0.90270 1.21294 0.95732 1.03914 1.02220 1.20551 0.93507 0.97352 0.98623 1.20354 0.99183 0.98749 1.02478 1.17104 0.90822 0.93552 1.00250 1.26880 0.90099 0.90148 0.87805 1.72091 1.08295 1.17366 1.24651 1.24583 0.97054 0.93793 0.95845 1.18771 0.90371 0.94214 0.97922 1.22808 0.81330 0.92295 0.86090 1.70063 1.27299 1.04830 1.27080 1.20090 0.88480 0.89259 0.84335 1.69588 1.10999 1.22237 1.32993 1.43977 1.30157 1.25235 1.34072 0.73101 1.18960 0.85762 0.81655 0.88528 1.69549 1.22402 1.36632 1.11799 1.42420 1.32534 1.25056 1.27396 0.72062 1.74611 0.94566 1.16006 1.22090 1.85433 1.31091 1.34088 1.47068 1.21240 0.90738 1.03338 1.02636 0.90149 0.87541 0.87631 0.87107 0.84494 0.85550 0.81909 0.82129 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.98 13.93 55.55 0.77 -19.20 16 2 C 0.08 2.03 5.40 -17.34 -0.09 1.93 16 3 Si 0.91 19.02 24.52 -169.99 -4.17 14.86 16 4 H -0.27 -5.40 6.71 56.52 0.38 -5.02 16 5 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.24 -5.14 6.86 56.52 0.39 -4.75 16 7 C -0.44 -10.98 9.57 -37.73 -0.36 -11.34 16 8 H 0.10 2.49 8.06 -52.49 -0.42 2.06 16 9 C 0.08 1.95 5.10 -106.87 -0.55 1.40 16 10 C -0.21 -4.58 7.17 -38.81 -0.28 -4.85 16 11 C -0.08 -1.58 10.01 -39.72 -0.40 -1.97 16 12 C -0.19 -3.53 9.71 -38.91 -0.38 -3.91 16 13 C -0.01 -0.29 5.87 -105.05 -0.62 -0.90 16 14 C 0.27 4.75 8.01 -13.84 -0.11 4.63 16 15 N -0.49 -7.83 11.25 -10.17 -0.11 -7.95 16 16 C 0.16 2.20 7.22 -156.55 -1.13 1.07 16 17 C 0.03 0.22 6.34 -29.03 -0.18 0.04 16 18 C 0.45 4.29 7.16 -154.52 -1.11 3.18 16 19 N -0.56 -6.99 10.07 -10.77 -0.11 -7.09 16 20 C 0.55 6.98 8.76 -320.87 -2.81 4.17 16 21 N -0.72 -9.89 14.16 30.04 0.43 -9.46 16 22 N -0.69 -6.67 5.57 -13.90 -0.08 -6.75 16 23 H 0.43 3.38 8.89 -40.82 -0.36 3.02 16 24 C 0.62 5.62 8.87 -318.52 -2.82 2.80 16 25 N -0.76 -6.65 14.13 30.37 0.43 -6.22 16 26 N -0.64 -4.83 5.42 -10.43 -0.06 -4.89 16 27 H 0.44 2.10 8.65 -40.82 -0.35 1.74 16 28 N -0.37 -5.82 12.15 31.18 0.38 -5.44 16 29 O 0.08 1.47 11.12 16.69 0.19 1.66 16 30 C -0.16 -3.34 9.47 -38.44 -0.36 -3.71 16 31 H 0.29 6.50 8.30 -40.82 -0.34 6.16 16 32 H 0.11 2.29 4.72 -52.49 -0.25 2.04 16 33 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 34 H 0.11 1.91 7.86 -52.49 -0.41 1.50 16 35 H 0.14 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.13 0.54 7.91 -51.93 -0.41 0.13 16 37 H 0.36 4.95 8.90 -40.82 -0.36 4.59 16 38 H 0.36 2.57 8.86 -40.82 -0.36 2.21 16 39 H 0.12 2.32 7.94 -52.49 -0.42 1.90 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -29.29 347.91 -11.66 -40.95 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -3.37 Total: 11.76 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -11.20 Total: -7.47 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: 1.65 Total: -67.00 kcal Atomic # 8 Polarization: 1.47 SS G_CDS: 0.19 Total: 1.66 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.17 Total: 14.86 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.29 -11.66 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356054984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.644 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds