Wall clock time and date at job start Tue Mar 31 2020 22:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 120.00396 * 2 1 4 4 H 1.48492 * 109.47397 * 275.41707 * 3 2 1 5 5 H 1.48507 * 109.46822 * 35.41335 * 3 2 1 6 6 H 1.48499 * 109.47326 * 155.41074 * 3 2 1 7 7 C 1.39937 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00113 * 341.73651 * 7 2 1 9 9 C 1.41431 * 119.99945 * 161.72903 * 7 2 1 10 10 C 1.40799 * 120.17994 * 330.18303 * 9 7 2 11 11 C 1.37710 * 120.03946 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.41365 * 359.78216 * 11 10 9 13 13 C 1.39896 * 120.35416 * 0.47111 * 12 11 10 14 14 C 1.47849 * 120.02656 * 179.78466 * 13 12 11 15 15 N 1.32104 * 126.67044 * 0.07149 * 14 13 12 16 16 C 1.34216 * 105.54127 * 180.13701 * 15 14 13 17 17 C 1.50702 * 126.18139 * 179.84703 * 16 15 14 18 18 C 1.50704 * 109.47331 * 269.71199 * 17 16 15 19 19 N 1.30267 * 119.38743 * 305.01077 * 18 17 16 20 20 C 1.35652 * 121.27039 * 179.97438 * 19 18 17 21 21 N 1.30738 * 120.01882 * 179.71903 * 20 19 18 22 22 N 1.38379 * 119.97162 * 359.97438 * 20 19 18 23 23 H 0.97004 * 120.58734 * 179.97438 * 22 20 19 24 24 C 1.38069 * 118.82411 * 359.97438 * 22 20 19 25 25 N 1.30237 * 120.60433 * 180.02562 * 24 22 20 26 26 N 1.36221 * 119.38655 * 124.97959 * 18 17 16 27 27 H 0.96997 * 120.03855 * 359.97438 * 26 18 17 28 28 N 1.30030 * 107.62466 * 359.58456 * 16 15 14 29 29 O 1.21287 * 110.48211 * 0.26563 * 28 16 15 30 30 C 1.39037 * 119.94737 * 359.51175 * 13 12 11 31 31 H 0.97002 * 119.99744 * 0.02562 * 1 2 3 32 32 H 1.07997 * 119.97741 * 0.02562 * 10 9 7 33 33 H 1.08004 * 119.79225 * 180.02562 * 11 10 9 34 34 H 1.07997 * 119.82269 * 180.26217 * 12 11 10 35 35 H 1.09004 * 109.47048 * 149.71804 * 17 16 15 36 36 H 1.09000 * 109.47463 * 29.71738 * 17 16 15 37 37 H 0.96997 * 119.99830 * 0.02562 * 21 20 19 38 38 H 0.96999 * 119.99652 * 359.97438 * 25 24 22 39 39 H 1.08002 * 120.19809 * 180.27460 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3755 2.1124 -1.3937 5 1 1.5017 2.6169 0.8114 6 1 3.5924 1.4097 0.5826 7 6 2.0079 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2940 9 6 3.3687 -1.2430 -0.3834 10 6 3.8624 -0.3110 -1.3163 11 6 5.1879 -0.3442 -1.6885 12 6 6.0439 -1.2873 -1.1477 13 6 5.5702 -2.2246 -0.2235 14 6 6.4902 -3.2321 0.3461 15 7 7.7769 -3.3662 0.0786 16 6 8.1918 -4.4055 0.8196 17 6 9.5913 -4.9627 0.8659 18 6 9.7383 -6.0391 -0.1785 19 7 8.9074 -7.0424 -0.1838 20 6 9.0042 -8.0320 -1.1065 21 7 8.1604 -9.0305 -1.0857 22 7 9.9997 -7.9871 -2.0666 23 1 10.0774 -8.6901 -2.7304 24 6 10.8805 -6.9238 -2.0629 25 7 11.8302 -6.8464 -2.9508 26 7 10.7371 -5.9446 -1.0999 27 1 11.3457 -5.1896 -1.0806 28 7 7.1693 -4.8410 1.4945 29 8 6.1819 -4.1842 1.2400 30 6 4.2348 -2.2044 0.1632 31 1 -0.4850 0.8401 -0.0004 32 1 3.2012 0.4303 -1.7401 33 1 5.5624 0.3729 -2.4040 34 1 7.0826 -1.3020 -1.4432 35 1 9.7817 -5.3853 1.8524 36 1 10.3069 -4.1646 0.6683 37 1 7.4647 -9.0635 -0.4106 38 1 11.9237 -7.5399 -3.6225 39 1 3.8658 -2.9233 0.8797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356054984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:52 Heat of formation + Delta-G solvation = 156.804377 kcal Electronic energy + Delta-G solvation = -27322.199400 eV Core-core repulsion = 23268.150490 eV Total energy + Delta-G solvation = -4054.048910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.52418 -42.40688 -39.73131 -37.96190 -37.27737 -36.65252 -35.70258 -34.33621 -32.75771 -32.38255 -32.28501 -31.63304 -30.61613 -27.19877 -25.61031 -25.24559 -23.88410 -23.72151 -22.40167 -21.98903 -20.79849 -20.47394 -19.69178 -19.12855 -18.39911 -18.01128 -17.66304 -17.41300 -17.10883 -16.74253 -16.57167 -16.30962 -15.73379 -15.23792 -15.16367 -14.69062 -14.50658 -14.13161 -13.99827 -13.77558 -13.53606 -13.43817 -12.97356 -12.89690 -12.72697 -12.61848 -12.35741 -12.08841 -11.89005 -11.72167 -11.55188 -11.40871 -11.28145 -11.02080 -10.96091 -9.87533 -9.74809 -9.64076 -9.42203 -8.89286 -6.53416 -0.45423 -0.23527 0.67789 0.73612 0.90665 1.11446 1.30210 1.40671 1.45252 1.55146 1.62342 1.71337 2.13675 2.29231 2.54040 2.58211 2.63332 2.99778 3.41526 3.61662 3.80640 4.02032 4.17287 4.25117 4.28956 4.32366 4.43736 4.57038 4.71321 4.76871 4.86167 4.89312 4.95043 5.12976 5.14229 5.41402 5.61428 5.64065 5.74428 5.85159 5.98476 6.08973 6.31265 6.62730 6.67391 6.76404 6.88888 7.05553 7.19566 8.18868 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.002385 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.327986 B =11735.837144 C =12022.511507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.047 3.953 3 Si 0.961 3.039 4 H -0.250 1.250 5 H -0.280 1.280 6 H -0.246 1.246 7 C -0.482 4.482 8 H 0.058 0.942 9 C 0.070 3.930 10 C -0.219 4.219 11 C -0.079 4.079 12 C -0.165 4.165 13 C -0.015 4.015 14 C 0.249 3.751 15 N -0.482 5.482 16 C 0.176 3.824 17 C 0.027 3.973 18 C 0.465 3.535 19 N -0.598 5.598 20 C 0.550 3.450 21 N -0.753 5.753 22 N -0.680 5.680 23 H 0.434 0.566 24 C 0.613 3.387 25 N -0.757 5.757 26 N -0.620 5.620 27 H 0.453 0.547 28 N -0.381 5.381 29 O 0.063 5.937 30 C -0.173 4.173 31 H 0.295 0.705 32 H 0.108 0.892 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.355 0.645 38 H 0.366 0.634 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.583 -5.028 -1.031 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.169 4.169 3 Si 0.784 3.216 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.169 1.169 7 C -0.511 4.511 8 H 0.076 0.924 9 C 0.068 3.932 10 C -0.239 4.239 11 C -0.097 4.097 12 C -0.186 4.186 13 C -0.017 4.017 14 C 0.033 3.967 15 N -0.216 5.216 16 C -0.098 4.098 17 C -0.012 4.012 18 C 0.187 3.813 19 N -0.332 5.332 20 C 0.177 3.823 21 N -0.388 5.388 22 N -0.329 5.329 23 H 0.276 0.724 24 C 0.243 3.757 25 N -0.401 5.401 26 N -0.259 5.259 27 H 0.298 0.702 28 N -0.091 5.091 29 O 0.007 5.993 30 C -0.195 4.195 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.183 0.817 36 H 0.191 0.809 37 H 0.173 0.827 38 H 0.187 0.813 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 23.626 -6.069 -0.918 24.411 hybrid contribution -1.017 -0.076 -0.218 1.043 sum 22.609 -6.145 -1.136 23.457 Atomic orbital electron populations 1.69724 1.09362 1.31659 1.36471 1.26876 0.95343 1.04363 0.90270 0.85546 0.79911 0.76221 0.79950 1.17486 1.20695 1.16896 1.19451 0.94256 0.95830 1.41551 0.92401 1.17685 0.92537 0.92098 0.90896 1.21458 0.97125 1.03461 1.01847 1.20977 0.92261 0.97827 0.98655 1.20785 1.00363 0.97072 1.00375 1.17215 0.90349 0.94060 1.00103 1.26642 0.90727 0.90540 0.88802 1.72093 1.07117 1.17903 1.24476 1.25465 0.98558 0.92233 0.93572 1.19263 0.87840 0.95120 0.99010 1.22990 0.80712 0.91609 0.85996 1.70055 1.29212 1.05988 1.27989 1.20279 0.88415 0.89068 0.84577 1.69601 1.11967 1.23586 1.33684 1.43986 1.29601 1.25737 1.33625 0.72361 1.19127 0.85744 0.81821 0.89009 1.69564 1.21879 1.36882 1.11777 1.42357 1.32165 1.25079 1.26322 0.70187 1.74641 0.94941 1.16257 1.23222 1.85439 1.32155 1.34344 1.47337 1.21263 0.91742 1.03316 1.03156 0.89464 0.87403 0.83567 0.84350 0.81710 0.80854 0.82665 0.81258 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.60 13.93 21.82 0.30 -44.29 16 2 C 0.05 2.36 5.40 85.25 0.46 2.82 16 3 Si 0.96 39.19 24.52 68.60 1.68 40.87 16 4 H -0.25 -9.37 6.71 99.48 0.67 -8.70 16 5 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.25 -10.01 6.86 99.48 0.68 -9.33 16 7 C -0.48 -25.57 9.57 23.47 0.22 -25.34 16 8 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 9 C 0.07 3.32 5.10 -21.32 -0.11 3.21 16 10 C -0.22 -9.18 7.17 22.77 0.16 -9.02 16 11 C -0.08 -2.76 10.01 22.18 0.22 -2.53 16 12 C -0.17 -5.65 9.71 22.70 0.22 -5.43 16 13 C -0.01 -0.56 5.87 -20.14 -0.12 -0.68 16 14 C 0.25 8.49 8.01 87.32 0.70 9.19 16 15 N -0.48 -13.76 11.25 -302.79 -3.40 -17.16 16 16 C 0.18 4.25 7.22 138.53 1.00 5.25 16 17 C 0.03 0.31 6.34 29.10 0.18 0.49 16 18 C 0.47 7.18 7.16 137.82 0.99 8.16 16 19 N -0.60 -13.84 10.07 -187.99 -1.89 -15.73 16 20 C 0.55 13.38 8.76 260.81 2.28 15.66 16 21 N -0.75 -20.72 14.16 -58.89 -0.83 -21.56 16 22 N -0.68 -12.10 5.57 -197.89 -1.10 -13.20 16 23 H 0.43 6.32 8.89 -92.71 -0.82 5.49 16 24 C 0.61 9.33 8.87 259.99 2.31 11.64 16 25 N -0.76 -10.96 14.13 -57.83 -0.82 -11.78 16 26 N -0.62 -7.02 5.42 -186.90 -1.01 -8.03 16 27 H 0.45 2.14 8.65 -92.71 -0.80 1.33 16 28 N -0.38 -11.55 12.15 -58.68 -0.71 -12.26 16 29 O 0.06 2.19 11.12 69.79 0.78 2.97 16 30 C -0.17 -7.50 9.47 23.01 0.22 -7.29 16 31 H 0.29 13.90 8.30 -92.71 -0.77 13.14 16 32 H 0.11 4.46 4.72 -2.91 -0.01 4.45 16 33 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 34 H 0.14 4.03 7.86 -2.91 -0.02 4.00 16 35 H 0.17 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.17 0.35 7.91 -2.39 -0.02 0.33 16 37 H 0.36 10.05 8.90 -92.71 -0.83 9.23 16 38 H 0.37 4.31 8.86 -92.71 -0.82 3.49 16 39 H 0.11 4.73 7.94 -2.91 -0.02 4.71 16 Total: -1.00 -67.45 347.91 -0.40 -67.86 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: -2.13 Total: 26.19 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 8.74 Total: 6.13 kcal Atomic # 7 Polarization: -134.54 SS G_CDS: -9.47 Total: -144.02 kcal Atomic # 8 Polarization: 2.19 SS G_CDS: 0.78 Total: 2.97 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.68 Total: 40.87 kcal Total: -67.45 -0.40 -67.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356054984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.659 kcal (2) G-P(sol) polarization free energy of solvation -67.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds