Wall clock time and date at job start Tue Mar 31 2020 22:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30866 * 126.19944 * 2 1 4 4 C 1.34584 * 107.28928 * 180.02562 * 3 2 1 5 5 C 1.47780 * 126.02777 * 180.02562 * 4 3 2 6 6 O 1.21569 * 120.00156 * 179.97438 * 5 4 3 7 7 N 1.34776 * 119.99716 * 359.97229 * 5 4 3 8 8 C 1.39116 * 119.99795 * 175.71263 * 7 5 4 9 9 C 1.39512 * 119.83763 * 215.02983 * 8 7 5 10 10 C 1.36364 * 120.16725 * 179.76401 * 9 8 7 11 11 C 1.40881 * 119.82504 * 0.51109 * 10 9 8 12 12 C 1.41142 * 120.15265 * 179.72189 * 11 10 9 13 13 H 1.08003 * 119.99180 * 214.80348 * 12 11 10 14 14 C 1.39906 * 120.00390 * 34.80802 * 12 11 10 15 15 N 1.30866 * 119.99892 * 355.55821 * 14 12 11 16 16 Si 1.86801 * 119.99933 * 175.55809 * 14 12 11 17 17 H 1.48494 * 109.47059 * 60.00085 * 16 14 12 18 18 H 1.48502 * 109.46983 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47105 * 299.99734 * 16 14 12 20 20 C 1.40872 * 119.68379 * 359.74459 * 11 10 9 21 21 C 1.36362 * 119.83018 * 359.97438 * 20 11 10 22 22 N 1.31584 * 107.95018 * 359.97438 * 4 3 2 23 23 N 1.28859 * 108.70499 * 359.97438 * 22 4 3 24 24 C 1.40087 * 125.77209 * 180.02562 * 23 22 4 25 25 N 1.33629 * 125.59669 * 359.97424 * 24 23 22 26 26 C 1.30802 * 109.79380 * 179.97438 * 25 24 23 27 27 N 1.34435 * 108.19667 * 0.02562 * 26 25 24 28 28 H 0.97008 * 126.77511 * 180.02562 * 27 26 25 29 29 N 1.31153 * 125.60090 * 179.66929 * 24 23 22 30 30 H 1.08996 * 109.47743 * 269.98339 * 1 2 3 31 31 H 1.09004 * 109.47188 * 29.98593 * 1 2 3 32 32 H 1.09003 * 109.47232 * 149.98172 * 1 2 3 33 33 H 0.96998 * 120.00477 * 355.70998 * 7 5 4 34 34 H 1.07997 * 119.91635 * 0.02562 * 9 8 7 35 35 H 1.07994 * 120.08237 * 180.25716 * 10 9 8 36 36 H 0.97004 * 120.00302 * 180.02562 * 15 14 12 37 37 H 1.07995 * 120.08789 * 179.97438 * 20 11 10 38 38 H 1.08001 * 119.91899 * 179.97438 * 21 20 11 39 39 H 1.08007 * 125.90390 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2799 1.0560 0.0000 4 6 3.5531 0.6199 -0.0006 5 6 4.7627 1.4688 -0.0003 6 8 5.8651 0.9563 -0.0004 7 7 4.6437 2.8113 0.0001 8 6 5.7791 3.6102 0.0905 9 6 5.7259 4.8153 0.7915 10 6 6.8360 5.6012 0.8884 11 6 8.0357 5.1987 0.2692 12 6 9.1873 6.0097 0.3602 13 1 9.8757 6.0649 -0.4702 14 6 9.4371 6.7418 1.5259 15 7 8.5608 6.7436 2.4978 16 14 11.0216 7.7167 1.6950 17 1 11.0974 8.7297 0.6120 18 1 11.0447 8.3986 3.0140 19 1 12.1824 6.7961 1.5940 20 6 8.0804 3.9831 -0.4414 21 6 6.9638 3.2048 -0.5248 22 7 3.5310 -0.6958 -0.0004 23 7 2.3038 -1.0885 0.0009 24 6 1.8702 -2.4206 0.0020 25 7 2.6628 -3.4965 0.0015 26 6 1.9346 -4.5831 0.0034 27 7 0.6399 -4.2208 0.0047 28 1 -0.1287 -4.8126 0.0065 29 7 0.6199 -2.8166 0.0094 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3634 0.8901 -0.5136 32 1 -0.3634 -0.8898 -0.5141 33 1 3.7665 3.2206 -0.0626 34 1 4.8043 5.1244 1.2621 35 1 6.7944 6.5318 1.4348 36 1 8.7338 7.2515 3.3060 37 1 8.9965 3.6684 -0.9188 38 1 6.9963 2.2728 -1.0696 39 1 2.3087 -5.5963 0.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356271610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:46 Heat of formation + Delta-G solvation = 195.707306 kcal Electronic energy + Delta-G solvation = -27047.911935 eV Core-core repulsion = 22995.549982 eV Total energy + Delta-G solvation = -4052.361953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.95625 -42.78038 -39.49080 -37.17415 -35.17815 -34.45581 -33.60063 -32.99589 -32.75338 -31.24570 -29.53577 -28.94341 -28.42685 -26.04086 -24.38029 -24.11672 -22.41464 -21.59954 -20.98932 -20.45191 -19.75217 -19.23463 -18.06224 -17.46591 -17.27546 -16.98596 -16.02304 -15.88009 -15.58274 -15.12614 -14.71874 -14.45100 -13.98886 -13.82422 -13.49767 -13.34551 -12.95290 -12.74125 -12.61396 -12.10417 -12.06909 -11.80017 -11.65444 -11.31730 -11.09785 -10.98374 -10.88019 -10.86639 -10.69846 -10.67953 -10.23657 -10.10420 -9.54101 -9.49712 -9.41024 -9.19144 -8.85442 -7.49008 -6.81976 -6.57322 -4.29494 0.37099 1.02201 1.24874 1.84442 2.12855 2.40252 2.75553 3.12637 3.14300 3.15147 3.16985 3.25165 3.55289 3.69692 3.76997 3.93999 4.02264 4.38758 4.75267 4.83122 4.92340 5.12115 5.14421 5.23631 5.45457 5.69649 5.79167 5.99087 6.23351 6.26277 6.28976 6.49884 6.78411 6.96221 7.10037 7.11643 7.23754 7.33919 7.69182 7.70241 7.82092 7.95012 8.11276 8.29498 8.36611 8.64508 8.73608 8.97144 9.04314 10.33538 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032410 B = 0.001974 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.710344 B =14183.022520 C =14670.071910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.246 3.754 3 N -0.470 5.470 4 C 0.175 3.825 5 C 0.596 3.404 6 O -0.502 6.502 7 N -0.623 5.623 8 C 0.001 3.999 9 C -0.114 4.114 10 C -0.142 4.142 11 C 0.101 3.899 12 C -0.459 4.459 13 H 0.076 0.924 14 C 0.069 3.931 15 N -0.810 5.810 16 Si 0.916 3.084 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.266 1.266 20 C -0.204 4.204 21 C -0.084 4.084 22 N -0.227 5.227 23 N -0.234 5.234 24 C 0.464 3.536 25 N -0.518 5.518 26 C 0.293 3.707 27 N -0.468 5.468 28 H 0.452 0.548 29 N -0.297 5.297 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.406 0.594 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.278 0.722 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.081 -19.429 -3.283 28.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.030 4.030 3 N -0.196 5.196 4 C -0.107 4.107 5 C 0.377 3.623 6 O -0.374 6.374 7 N -0.266 5.266 8 C -0.091 4.091 9 C -0.134 4.134 10 C -0.162 4.162 11 C 0.099 3.901 12 C -0.490 4.490 13 H 0.094 0.906 14 C -0.146 4.146 15 N -0.437 5.437 16 Si 0.741 3.259 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.225 4.225 21 C -0.104 4.104 22 N -0.061 5.061 23 N -0.028 5.028 24 C 0.094 3.906 25 N -0.247 5.247 26 C -0.006 4.006 27 N -0.189 5.189 28 H 0.300 0.700 29 N -0.133 5.133 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.241 0.759 34 H 0.112 0.888 35 H 0.151 0.849 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -19.970 -19.189 -3.025 27.860 hybrid contribution -0.362 -0.323 0.307 0.574 sum -20.332 -19.512 -2.718 28.311 Atomic orbital electron populations 1.20509 0.82282 1.05507 1.04992 1.25286 0.97812 0.80566 0.99322 1.71434 1.00556 1.26789 1.20833 1.24288 0.93087 0.88550 1.04762 1.16210 0.84684 0.82010 0.79406 1.90841 1.24715 1.73193 1.48606 1.42593 1.10071 1.03876 1.70108 1.17235 0.87242 0.95021 1.09577 1.20322 0.98598 0.94982 0.99541 1.21190 0.90826 1.00747 1.03408 1.17745 0.92492 0.90240 0.89644 1.19474 1.06514 1.22560 1.00450 0.90586 1.25889 0.98228 0.95081 0.95410 1.69754 1.33968 1.34407 1.05621 0.86240 0.81829 0.79781 0.78025 1.19062 1.20470 1.19103 1.20796 0.97030 0.96060 1.08564 1.20434 0.92402 0.98990 0.98545 1.74759 0.98799 1.13736 1.18842 1.43147 1.04685 1.02522 1.52423 1.19363 0.87212 0.83861 1.00151 1.70382 1.33956 0.95838 1.24487 1.26309 0.80323 1.00160 0.93800 1.48034 1.09718 1.04265 1.56848 0.69982 1.78219 1.15789 0.89912 1.29353 0.88763 0.87975 0.88608 0.75860 0.88789 0.84915 0.91071 0.88439 0.87328 0.74408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 9.84 36.00 0.35 -0.21 16 2 C 0.25 3.19 7.94 -155.24 -1.23 1.95 16 3 N -0.47 -7.30 11.10 -8.48 -0.09 -7.40 16 4 C 0.17 3.23 7.95 -156.29 -1.24 1.99 16 5 C 0.60 12.54 7.66 -12.36 -0.09 12.45 16 6 O -0.50 -12.26 14.50 5.31 0.08 -12.19 16 7 N -0.62 -12.49 5.30 -10.61 -0.06 -12.55 16 8 C 0.00 0.03 6.30 -83.60 -0.53 -0.49 16 9 C -0.11 -2.70 9.90 -39.78 -0.39 -3.09 16 10 C -0.14 -3.71 8.61 -39.26 -0.34 -4.05 16 11 C 0.10 2.77 5.55 -106.80 -0.59 2.18 16 12 C -0.46 -12.43 9.02 -37.86 -0.34 -12.77 16 13 H 0.08 1.97 7.85 -52.48 -0.41 1.55 16 14 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 15 N -0.81 -21.40 10.60 55.55 0.59 -20.81 16 16 Si 0.92 19.32 29.56 -169.99 -5.03 14.29 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 C -0.20 -5.32 9.74 -39.26 -0.38 -5.70 16 21 C -0.08 -2.09 8.61 -39.78 -0.34 -2.43 16 22 N -0.23 -4.18 12.03 32.07 0.39 -3.80 16 23 N -0.23 -3.46 3.52 -10.92 -0.04 -3.50 16 24 C 0.46 5.57 8.74 -320.54 -2.80 2.77 16 25 N -0.52 -5.74 11.20 -14.87 -0.17 -5.91 16 26 C 0.29 1.29 13.12 -90.67 -1.19 0.11 16 27 N -0.47 -1.64 7.44 29.53 0.22 -1.42 16 28 H 0.45 -0.48 8.96 -182.34 -1.63 -2.11 16 29 N -0.30 -2.45 10.41 30.08 0.31 -2.13 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.64 6.33 -51.93 -0.33 0.31 16 33 H 0.41 6.92 8.53 -40.82 -0.35 6.57 16 34 H 0.09 1.95 8.06 -52.49 -0.42 1.52 16 35 H 0.13 3.57 6.13 -52.49 -0.32 3.25 16 36 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 37 H 0.10 2.40 8.06 -52.49 -0.42 1.97 16 38 H 0.11 2.69 6.22 -52.49 -0.33 2.36 16 39 H 0.24 -0.33 8.06 -52.48 -0.42 -0.75 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -37.56 348.15 -12.39 -49.95 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.62 Total: 5.82 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -9.22 Total: -5.61 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 1.15 Total: -57.51 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.56 -12.39 -49.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356271610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.656 kcal (2) G-P(sol) polarization free energy of solvation -37.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds