Wall clock time and date at job start Tue Mar 31 2020 22:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30866 * 126.19944 * 2 1 4 4 C 1.34584 * 107.28928 * 180.02562 * 3 2 1 5 5 C 1.47780 * 126.02777 * 180.02562 * 4 3 2 6 6 O 1.21569 * 120.00156 * 179.97438 * 5 4 3 7 7 N 1.34776 * 119.99716 * 359.97229 * 5 4 3 8 8 C 1.39116 * 119.99795 * 175.71263 * 7 5 4 9 9 C 1.39512 * 119.83763 * 215.02983 * 8 7 5 10 10 C 1.36364 * 120.16725 * 179.76401 * 9 8 7 11 11 C 1.40881 * 119.82504 * 0.51109 * 10 9 8 12 12 C 1.41142 * 120.15265 * 179.72189 * 11 10 9 13 13 H 1.08003 * 119.99180 * 214.80348 * 12 11 10 14 14 C 1.39906 * 120.00390 * 34.80802 * 12 11 10 15 15 N 1.30866 * 119.99892 * 355.55821 * 14 12 11 16 16 Si 1.86801 * 119.99933 * 175.55809 * 14 12 11 17 17 H 1.48494 * 109.47059 * 60.00085 * 16 14 12 18 18 H 1.48502 * 109.46983 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47105 * 299.99734 * 16 14 12 20 20 C 1.40872 * 119.68379 * 359.74459 * 11 10 9 21 21 C 1.36362 * 119.83018 * 359.97438 * 20 11 10 22 22 N 1.31584 * 107.95018 * 359.97438 * 4 3 2 23 23 N 1.28859 * 108.70499 * 359.97438 * 22 4 3 24 24 C 1.40087 * 125.77209 * 180.02562 * 23 22 4 25 25 N 1.33629 * 125.59669 * 359.97424 * 24 23 22 26 26 C 1.30802 * 109.79380 * 179.97438 * 25 24 23 27 27 N 1.34435 * 108.19667 * 0.02562 * 26 25 24 28 28 H 0.97008 * 126.77511 * 180.02562 * 27 26 25 29 29 N 1.31153 * 125.60090 * 179.66929 * 24 23 22 30 30 H 1.08996 * 109.47743 * 269.98339 * 1 2 3 31 31 H 1.09004 * 109.47188 * 29.98593 * 1 2 3 32 32 H 1.09003 * 109.47232 * 149.98172 * 1 2 3 33 33 H 0.96998 * 120.00477 * 355.70998 * 7 5 4 34 34 H 1.07997 * 119.91635 * 0.02562 * 9 8 7 35 35 H 1.07994 * 120.08237 * 180.25716 * 10 9 8 36 36 H 0.97004 * 120.00302 * 180.02562 * 15 14 12 37 37 H 1.07995 * 120.08789 * 179.97438 * 20 11 10 38 38 H 1.08001 * 119.91899 * 179.97438 * 21 20 11 39 39 H 1.08007 * 125.90390 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2799 1.0560 0.0000 4 6 3.5531 0.6199 -0.0006 5 6 4.7627 1.4688 -0.0003 6 8 5.8651 0.9563 -0.0004 7 7 4.6437 2.8113 0.0001 8 6 5.7791 3.6102 0.0905 9 6 5.7259 4.8153 0.7915 10 6 6.8360 5.6012 0.8884 11 6 8.0357 5.1987 0.2692 12 6 9.1873 6.0097 0.3602 13 1 9.8757 6.0649 -0.4702 14 6 9.4371 6.7418 1.5259 15 7 8.5608 6.7436 2.4978 16 14 11.0216 7.7167 1.6950 17 1 11.0974 8.7297 0.6120 18 1 11.0447 8.3986 3.0140 19 1 12.1824 6.7961 1.5940 20 6 8.0804 3.9831 -0.4414 21 6 6.9638 3.2048 -0.5248 22 7 3.5310 -0.6958 -0.0004 23 7 2.3038 -1.0885 0.0009 24 6 1.8702 -2.4206 0.0020 25 7 2.6628 -3.4965 0.0015 26 6 1.9346 -4.5831 0.0034 27 7 0.6399 -4.2208 0.0047 28 1 -0.1287 -4.8126 0.0065 29 7 0.6199 -2.8166 0.0094 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3634 0.8901 -0.5136 32 1 -0.3634 -0.8898 -0.5141 33 1 3.7665 3.2206 -0.0626 34 1 4.8043 5.1244 1.2621 35 1 6.7944 6.5318 1.4348 36 1 8.7338 7.2515 3.3060 37 1 8.9965 3.6684 -0.9188 38 1 6.9963 2.2728 -1.0696 39 1 2.3087 -5.5963 0.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356271610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:46 Heat of formation + Delta-G solvation = 172.505991 kcal Electronic energy + Delta-G solvation = -27048.918020 eV Core-core repulsion = 22995.549982 eV Total energy + Delta-G solvation = -4053.368037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.04915 -43.40223 -41.25023 -39.08417 -36.33634 -36.11389 -34.75751 -34.57432 -33.53300 -32.02355 -31.49819 -30.81887 -29.32831 -27.66251 -25.85844 -24.94589 -23.54752 -23.08514 -22.64941 -21.64924 -21.34825 -19.82435 -19.39299 -19.12013 -18.47650 -18.31675 -17.67784 -17.00721 -16.69786 -16.10536 -16.06596 -16.01335 -15.64892 -15.20357 -14.87340 -14.50710 -14.14554 -14.03710 -13.99054 -13.62125 -13.55332 -13.26059 -12.95063 -12.89293 -12.78184 -12.64305 -12.50418 -11.90031 -11.89288 -11.51321 -11.49661 -11.41905 -11.32918 -11.17614 -11.09132 -10.74411 -10.46838 -9.48522 -8.78539 -8.50391 -6.33318 -0.52257 0.19617 0.33375 0.71102 0.94983 1.14320 1.41451 1.51273 1.54029 1.66295 1.67760 1.83386 2.09339 2.25740 2.63440 2.80428 2.90106 3.16593 3.58964 3.68666 3.78868 4.30635 4.39258 4.49727 4.53538 4.54375 4.59023 4.67051 4.88414 4.90616 4.99618 5.07760 5.12551 5.28698 5.38322 5.42951 5.68872 5.85366 5.94224 5.99981 6.10587 6.36042 6.36945 6.56085 6.66474 6.81394 6.94140 6.96129 7.12717 8.42335 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032410 B = 0.001974 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.710344 B =14183.022520 C =14670.071910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.255 3.745 3 N -0.480 5.480 4 C 0.155 3.845 5 C 0.600 3.400 6 O -0.543 6.543 7 N -0.612 5.612 8 C 0.011 3.989 9 C -0.109 4.109 10 C -0.158 4.158 11 C 0.072 3.928 12 C -0.494 4.494 13 H 0.076 0.924 14 C 0.027 3.973 15 N -0.838 5.838 16 Si 0.990 3.010 17 H -0.257 1.257 18 H -0.268 1.268 19 H -0.266 1.266 20 C -0.219 4.219 21 C -0.093 4.093 22 N -0.257 5.257 23 N -0.234 5.234 24 C 0.425 3.575 25 N -0.577 5.577 26 C 0.316 3.684 27 N -0.441 5.441 28 H 0.475 0.525 29 N -0.288 5.288 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.423 0.577 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.286 0.714 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.657 -21.046 -2.939 31.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.020 4.020 3 N -0.207 5.207 4 C -0.126 4.126 5 C 0.383 3.617 6 O -0.418 6.418 7 N -0.257 5.257 8 C -0.082 4.082 9 C -0.129 4.129 10 C -0.178 4.178 11 C 0.069 3.931 12 C -0.524 4.524 13 H 0.094 0.906 14 C -0.185 4.185 15 N -0.466 5.466 16 Si 0.811 3.189 17 H -0.181 1.181 18 H -0.192 1.192 19 H -0.190 1.190 20 C -0.239 4.239 21 C -0.113 4.113 22 N -0.094 5.094 23 N -0.027 5.027 24 C 0.056 3.944 25 N -0.308 5.308 26 C 0.019 3.981 27 N -0.164 5.164 28 H 0.328 0.672 29 N -0.125 5.125 30 H 0.132 0.868 31 H 0.139 0.861 32 H 0.126 0.874 33 H 0.261 0.739 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges -22.653 -20.853 -2.692 30.907 hybrid contribution 0.168 -0.139 0.181 0.284 sum -22.485 -20.992 -2.510 30.863 Atomic orbital electron populations 1.20803 0.78340 1.06991 1.06641 1.26230 0.99458 0.79428 0.96858 1.71379 0.99357 1.28014 1.21968 1.23588 0.93210 0.88546 1.07266 1.16467 0.85122 0.82158 0.77954 1.90806 1.26704 1.74001 1.50312 1.42418 1.09885 1.03576 1.69812 1.17278 0.87740 0.95063 1.08123 1.20544 0.99142 0.94410 0.98802 1.21185 0.91460 1.01054 1.04090 1.18076 0.93378 0.90984 0.90637 1.19725 1.07013 1.24144 1.01513 0.90606 1.26783 1.01689 0.95607 0.94469 1.69816 1.35712 1.34901 1.06128 0.85124 0.76980 0.78193 0.78580 1.18105 1.19238 1.19029 1.20916 0.97689 0.96213 1.09056 1.20524 0.92996 0.98799 0.99028 1.74610 1.01444 1.13780 1.19541 1.43232 1.03691 1.04327 1.51468 1.19506 0.88457 0.83114 1.03318 1.70292 1.36448 0.97229 1.26861 1.27253 0.79695 1.00558 0.90586 1.48006 1.10783 1.02774 1.54882 0.67185 1.78108 1.14017 0.92435 1.27976 0.86763 0.86096 0.87358 0.73908 0.85552 0.85867 0.90339 0.88148 0.87545 0.69016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 9.84 71.24 0.70 -0.16 16 2 C 0.26 6.33 7.94 138.07 1.10 7.43 16 3 N -0.48 -14.73 11.10 -180.74 -2.01 -16.74 16 4 C 0.15 5.85 7.95 137.07 1.09 6.94 16 5 C 0.60 25.99 7.66 86.77 0.66 26.66 16 6 O -0.54 -27.71 14.50 -3.93 -0.06 -27.77 16 7 N -0.61 -24.75 5.30 -305.76 -1.62 -26.37 16 8 C 0.01 0.52 6.30 38.60 0.24 0.77 16 9 C -0.11 -5.17 9.90 22.14 0.22 -4.95 16 10 C -0.16 -8.49 8.61 22.48 0.19 -8.30 16 11 C 0.07 4.07 5.55 -21.27 -0.12 3.95 16 12 C -0.49 -27.56 9.02 23.39 0.21 -27.35 16 13 H 0.08 4.07 7.85 -2.91 -0.02 4.04 16 14 C 0.03 1.40 5.42 85.24 0.46 1.86 16 15 N -0.84 -44.93 10.60 21.82 0.23 -44.70 16 16 Si 0.99 39.76 29.56 68.60 2.03 41.78 16 17 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 18 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 20 C -0.22 -11.86 9.74 22.48 0.22 -11.64 16 21 C -0.09 -4.83 8.61 22.14 0.19 -4.64 16 22 N -0.26 -9.72 12.03 -52.44 -0.63 -10.35 16 23 N -0.23 -6.87 3.52 -188.47 -0.66 -7.53 16 24 C 0.42 9.74 8.74 260.70 2.28 12.01 16 25 N -0.58 -12.08 11.20 -200.95 -2.25 -14.34 16 26 C 0.32 1.74 13.12 180.37 2.37 4.11 16 27 N -0.44 -1.48 7.44 -60.50 -0.45 -1.93 16 28 H 0.47 -3.09 8.96 -213.09 -1.91 -5.00 16 29 N -0.29 -4.01 10.41 -58.75 -0.61 -4.62 16 30 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 1.11 6.33 -2.39 -0.02 1.10 16 33 H 0.42 14.19 8.53 -92.71 -0.79 13.40 16 34 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 35 H 0.12 6.82 6.13 -2.91 -0.02 6.80 16 36 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 37 H 0.10 5.20 8.06 -2.91 -0.02 5.17 16 38 H 0.11 5.51 6.22 -2.91 -0.02 5.49 16 39 H 0.29 -2.24 8.06 -2.91 -0.02 -2.27 16 Total: -1.00 -87.53 348.15 2.26 -85.27 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -1.53 Total: 20.59 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 9.82 Total: 6.69 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -8.00 Total: -126.57 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.06 Total: -27.77 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.78 kcal Total: -87.53 2.26 -85.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356271610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 257.781 kcal (2) G-P(sol) polarization free energy of solvation -87.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds