Wall clock time and date at job start Tue Mar 31 2020 22:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86808 * 119.99822 * 2 1 4 4 H 1.48504 * 109.46879 * 269.99916 * 3 2 1 5 5 H 1.48498 * 109.46797 * 29.99682 * 3 2 1 6 6 H 1.48496 * 109.46948 * 150.00153 * 3 2 1 7 7 C 1.38945 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99535 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00537 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00423 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99810 * 359.72998 * 10 9 7 12 12 C 1.50697 * 120.00288 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47167 * 179.72681 * 12 10 9 14 14 C 1.34776 * 119.99631 * 180.02562 * 13 12 10 15 15 O 1.21588 * 120.00624 * 354.89788 * 14 13 12 16 16 N 1.34781 * 120.00015 * 174.90200 * 14 13 12 17 17 C 1.47228 * 121.34004 * 184.91796 * 16 14 13 18 18 C 1.52782 * 107.90141 * 115.78239 * 17 16 14 19 19 C 1.50608 * 110.85740 * 47.48611 * 18 17 16 20 20 C 1.39192 * 117.61937 * 159.94026 * 19 18 17 21 21 F 1.35101 * 119.71240 * 359.54347 * 20 19 18 22 22 C 1.38128 * 120.58056 * 179.56169 * 20 19 18 23 23 C 1.38207 * 119.82994 * 359.90684 * 22 20 19 24 24 C 1.38174 * 119.71257 * 0.22885 * 23 22 20 25 25 F 1.35100 * 119.74415 * 180.02562 * 24 23 22 26 26 C 1.37616 * 122.86385 * 339.83181 * 19 18 17 27 27 C 1.46683 * 121.33568 * 4.63740 * 16 14 13 28 28 H 0.97000 * 119.99923 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99278 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46942 * 299.72734 * 12 10 9 31 31 H 1.08993 * 109.46966 * 59.72310 * 12 10 9 32 32 H 0.96998 * 120.00102 * 359.97438 * 13 12 10 33 33 H 1.09009 * 109.77348 * 235.38193 * 17 16 14 34 34 H 1.08998 * 109.77452 * 356.12204 * 17 16 14 35 35 H 1.09003 * 109.20710 * 167.83989 * 18 17 16 36 36 H 1.09000 * 109.20439 * 287.18188 * 18 17 16 37 37 H 1.08004 * 120.08310 * 179.97438 * 22 20 19 38 38 H 1.07999 * 120.14695 * 180.20942 * 23 22 20 39 39 H 1.09007 * 109.43712 * 344.44621 * 27 16 14 40 40 H 1.09004 * 109.43470 * 104.31613 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4209 0.0044 12 6 5.5608 -2.3704 -0.0011 13 7 6.0491 -3.7516 0.0055 14 6 7.3742 -3.9978 0.0072 15 8 8.1637 -3.0782 -0.0903 16 7 7.8244 -5.2634 0.1170 17 6 9.2626 -5.5576 0.2296 18 6 9.5073 -6.1870 1.6001 19 6 8.5050 -7.2767 1.8764 20 6 8.8275 -8.2184 2.8493 21 9 10.0102 -8.1341 3.4970 22 6 7.9491 -9.2387 3.1582 23 6 6.7380 -9.3265 2.4983 24 6 6.4165 -8.3946 1.5301 25 9 5.2325 -8.4795 0.8850 26 6 7.3024 -7.3706 1.2140 27 6 6.9007 -6.4027 0.1351 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3632 -0.0014 30 1 5.9241 -1.8608 -0.8935 31 1 5.9241 -1.8523 0.8864 32 1 5.4188 -4.4889 0.0094 33 1 9.5590 -6.2545 -0.5545 34 1 9.8359 -4.6350 0.1388 35 1 10.5120 -6.6090 1.6267 36 1 9.4210 -5.4184 2.3681 37 1 8.2077 -9.9654 3.9142 38 1 6.0459 -10.1201 2.7382 39 1 5.8886 -6.0462 0.3272 40 1 6.9293 -6.9083 -0.8301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358299807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:18 Heat of formation + Delta-G solvation = -113.614155 kcal Electronic energy + Delta-G solvation = -28826.528874 eV Core-core repulsion = 24277.771799 eV Total energy + Delta-G solvation = -4548.757075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.31685 -49.24582 -40.77450 -39.38683 -38.39540 -36.36684 -34.65882 -33.90397 -32.82477 -31.83316 -31.79887 -29.52265 -27.85368 -26.18093 -24.67764 -23.96719 -22.52051 -21.74179 -19.80469 -19.56158 -18.93411 -18.23991 -17.82606 -17.48577 -17.09028 -16.49981 -16.30232 -15.89408 -15.70414 -15.53392 -15.03909 -14.91425 -14.77779 -14.49251 -14.34603 -14.08630 -13.93364 -13.75712 -13.56481 -13.18023 -13.05995 -12.79448 -12.53795 -12.26057 -12.23742 -12.07801 -12.04557 -11.73847 -11.24220 -11.15900 -10.64853 -10.20409 -10.06634 -9.70717 -9.36354 -9.15694 -8.87817 -8.78463 -8.66615 -8.31311 -6.41454 -3.94133 0.50365 0.56159 2.44543 2.86916 2.99149 3.03943 3.12165 3.15997 3.55618 3.67431 3.70526 3.84961 4.01847 4.03082 4.14256 4.35356 4.50596 4.60055 4.75943 4.87710 4.93531 5.08136 5.13540 5.19031 5.22536 5.41891 5.51468 5.56010 5.60482 5.66174 5.67904 5.74719 5.77340 5.82730 6.17744 6.33974 6.55642 6.83733 7.43813 7.94777 8.00525 8.42882 8.58524 8.80911 9.28942 9.62289 10.70675 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017228 B = 0.002597 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.852550 B =10777.115355 C =11742.649433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.438 3.562 11 O -0.579 6.579 12 C 0.124 3.876 13 N -0.724 5.724 14 C 0.715 3.285 15 O -0.590 6.590 16 N -0.632 5.632 17 C 0.132 3.868 18 C -0.099 4.099 19 C -0.071 4.071 20 C 0.086 3.914 21 F -0.133 7.133 22 C -0.123 4.123 23 C -0.127 4.127 24 C 0.101 3.899 25 F -0.126 7.126 26 C -0.100 4.100 27 C 0.151 3.849 28 H 0.276 0.724 29 H 0.375 0.625 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.407 0.593 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.103 0.897 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.671 -16.765 3.921 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.224 3.776 11 O -0.464 6.464 12 C -0.004 4.004 13 N -0.384 5.384 14 C 0.417 3.583 15 O -0.468 6.468 16 N -0.369 5.369 17 C 0.009 3.991 18 C -0.137 4.137 19 C -0.072 4.072 20 C 0.067 3.933 21 F -0.112 7.112 22 C -0.142 4.142 23 C -0.146 4.146 24 C 0.081 3.919 25 F -0.105 7.105 26 C -0.102 4.102 27 C 0.028 3.972 28 H 0.086 0.914 29 H 0.208 0.792 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.247 0.753 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.120 0.880 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.577 -16.597 3.849 25.952 hybrid contribution 0.077 0.858 0.189 0.882 sum 19.654 -15.739 4.038 25.501 Atomic orbital electron populations 1.69619 1.05720 1.27825 1.48149 1.25066 0.95529 0.98172 0.97117 0.86672 0.79923 0.83755 0.79156 1.19368 1.19992 1.19197 1.19440 0.78937 0.96808 1.48662 0.86069 1.42106 1.07696 1.06111 1.65385 1.19635 0.88039 0.84906 0.85056 1.90540 1.69222 1.30908 1.55686 1.20841 0.93496 0.82710 1.03359 1.44935 1.05195 1.09509 1.78715 1.15606 0.82723 0.82217 0.77775 1.90903 1.55205 1.42462 1.58267 1.47089 1.07136 1.04083 1.78636 1.21448 0.80444 1.01897 0.95325 1.20868 0.97415 0.95977 0.99454 1.19353 0.95416 0.96711 0.95723 1.17663 0.83203 0.97345 0.95138 1.91505 1.44024 1.95974 1.79664 1.20918 0.93433 0.98446 1.01413 1.20931 0.97749 0.99709 0.96198 1.17556 0.82587 0.96774 0.95032 1.91568 1.43384 1.95710 1.79819 1.19580 0.93816 0.97089 0.99751 1.20279 0.94342 0.86091 0.96524 0.91375 0.79218 0.89625 0.89862 0.75280 0.90696 0.87546 0.88728 0.89139 0.83570 0.83331 0.87962 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.92 13.96 55.50 0.77 -24.14 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.94 27.74 -169.99 -4.71 14.22 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.25 6.52 56.52 0.37 -4.89 16 7 C -0.31 -8.51 10.16 -14.94 -0.15 -8.66 16 8 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 9 N -0.58 -13.31 5.09 -10.96 -0.06 -13.37 16 10 C 0.44 9.59 7.85 -10.99 -0.09 9.50 16 11 O -0.58 -14.55 15.24 5.54 0.08 -14.47 16 12 C 0.12 2.16 6.16 -5.20 -0.03 2.13 16 13 N -0.72 -11.80 5.44 -66.42 -0.36 -12.17 16 14 C 0.72 11.15 8.32 -86.92 -0.72 10.43 16 15 O -0.59 -10.72 15.84 5.29 0.08 -10.63 16 16 N -0.63 -7.63 2.94 -180.36 -0.53 -8.16 16 17 C 0.13 1.25 6.44 -3.76 -0.02 1.23 16 18 C -0.10 -0.85 5.57 -28.04 -0.16 -1.00 16 19 C -0.07 -0.67 5.77 -104.54 -0.60 -1.27 16 20 C 0.09 0.76 7.21 -39.27 -0.28 0.47 16 21 F -0.13 -1.22 16.40 2.25 0.04 -1.18 16 22 C -0.12 -0.90 10.01 -39.63 -0.40 -1.29 16 23 C -0.13 -0.97 10.02 -39.62 -0.40 -1.37 16 24 C 0.10 0.97 7.22 -39.30 -0.28 0.69 16 25 F -0.13 -1.39 16.60 2.25 0.04 -1.35 16 26 C -0.10 -1.00 5.81 -104.69 -0.61 -1.61 16 27 C 0.15 1.61 5.71 -5.24 -0.03 1.58 16 28 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 30 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.41 6.61 5.03 -40.82 -0.21 6.40 16 33 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.11 1.10 7.07 -51.93 -0.37 0.73 16 35 H 0.09 0.64 7.74 -51.93 -0.40 0.23 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.10 1.20 5.73 -51.92 -0.30 0.90 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -32.95 345.60 -7.33 -40.28 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -4.02 Total: 13.83 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: -3.87 Total: 11.93 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.17 Total: -57.84 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.17 Total: -25.10 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.07 Total: -2.53 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.22 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.95 -7.33 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358299807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.330 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds