Wall clock time and date at job start Tue Mar 31 2020 22:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86808 * 119.99822 * 2 1 4 4 H 1.48504 * 109.46879 * 269.99916 * 3 2 1 5 5 H 1.48498 * 109.46797 * 29.99682 * 3 2 1 6 6 H 1.48496 * 109.46948 * 150.00153 * 3 2 1 7 7 C 1.38945 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99535 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00537 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00423 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99810 * 359.72998 * 10 9 7 12 12 C 1.50697 * 120.00288 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47167 * 179.72681 * 12 10 9 14 14 C 1.34776 * 119.99631 * 180.02562 * 13 12 10 15 15 O 1.21588 * 120.00624 * 354.89788 * 14 13 12 16 16 N 1.34781 * 120.00015 * 174.90200 * 14 13 12 17 17 C 1.47228 * 121.34004 * 184.91796 * 16 14 13 18 18 C 1.52782 * 107.90141 * 115.78239 * 17 16 14 19 19 C 1.50608 * 110.85740 * 47.48611 * 18 17 16 20 20 C 1.39192 * 117.61937 * 159.94026 * 19 18 17 21 21 F 1.35101 * 119.71240 * 359.54347 * 20 19 18 22 22 C 1.38128 * 120.58056 * 179.56169 * 20 19 18 23 23 C 1.38207 * 119.82994 * 359.90684 * 22 20 19 24 24 C 1.38174 * 119.71257 * 0.22885 * 23 22 20 25 25 F 1.35100 * 119.74415 * 180.02562 * 24 23 22 26 26 C 1.37616 * 122.86385 * 339.83181 * 19 18 17 27 27 C 1.46683 * 121.33568 * 4.63740 * 16 14 13 28 28 H 0.97000 * 119.99923 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99278 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46942 * 299.72734 * 12 10 9 31 31 H 1.08993 * 109.46966 * 59.72310 * 12 10 9 32 32 H 0.96998 * 120.00102 * 359.97438 * 13 12 10 33 33 H 1.09009 * 109.77348 * 235.38193 * 17 16 14 34 34 H 1.08998 * 109.77452 * 356.12204 * 17 16 14 35 35 H 1.09003 * 109.20710 * 167.83989 * 18 17 16 36 36 H 1.09000 * 109.20439 * 287.18188 * 18 17 16 37 37 H 1.08004 * 120.08310 * 179.97438 * 22 20 19 38 38 H 1.07999 * 120.14695 * 180.20942 * 23 22 20 39 39 H 1.09007 * 109.43712 * 344.44621 * 27 16 14 40 40 H 1.09004 * 109.43470 * 104.31613 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4209 0.0044 12 6 5.5608 -2.3704 -0.0011 13 7 6.0491 -3.7516 0.0055 14 6 7.3742 -3.9978 0.0072 15 8 8.1637 -3.0782 -0.0903 16 7 7.8244 -5.2634 0.1170 17 6 9.2626 -5.5576 0.2296 18 6 9.5073 -6.1870 1.6001 19 6 8.5050 -7.2767 1.8764 20 6 8.8275 -8.2184 2.8493 21 9 10.0102 -8.1341 3.4970 22 6 7.9491 -9.2387 3.1582 23 6 6.7380 -9.3265 2.4983 24 6 6.4165 -8.3946 1.5301 25 9 5.2325 -8.4795 0.8850 26 6 7.3024 -7.3706 1.2140 27 6 6.9007 -6.4027 0.1351 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3632 -0.0014 30 1 5.9241 -1.8608 -0.8935 31 1 5.9241 -1.8523 0.8864 32 1 5.4188 -4.4889 0.0094 33 1 9.5590 -6.2545 -0.5545 34 1 9.8359 -4.6350 0.1388 35 1 10.5120 -6.6090 1.6267 36 1 9.4210 -5.4184 2.3681 37 1 8.2077 -9.9654 3.9142 38 1 6.0459 -10.1201 2.7382 39 1 5.8886 -6.0462 0.3272 40 1 6.9293 -6.9083 -0.8301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358299807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:17 Heat of formation + Delta-G solvation = -136.197158 kcal Electronic energy + Delta-G solvation = -28827.508146 eV Core-core repulsion = 24277.771799 eV Total energy + Delta-G solvation = -4549.736348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.02836 -49.99414 -41.79496 -40.56408 -39.91185 -37.28635 -36.32969 -35.50082 -33.88201 -33.63925 -32.59160 -30.34980 -29.23146 -27.18273 -26.16526 -25.00342 -23.23459 -22.66368 -21.49844 -20.87880 -20.44158 -19.51765 -18.57225 -18.23230 -18.00352 -17.57658 -17.31175 -17.15218 -16.94289 -16.72424 -16.44191 -16.14299 -15.84951 -15.47778 -15.42625 -15.12928 -14.97978 -14.80769 -14.61954 -14.34000 -14.28711 -14.01968 -13.89130 -13.67176 -13.43608 -12.98667 -12.94161 -12.91482 -12.44897 -12.41834 -12.00302 -11.86060 -11.58521 -11.46258 -10.66907 -10.40949 -10.31694 -10.02401 -9.78019 -9.51415 -8.45838 -6.07988 -0.18308 -0.09006 1.30870 1.34185 1.37010 1.44703 1.77463 1.97633 2.20426 2.20690 2.57415 2.92198 2.99567 3.05114 3.10476 3.34074 3.44300 3.71016 3.87919 3.96212 4.05730 4.14866 4.21767 4.35390 4.37659 4.43309 4.48396 4.51339 4.72091 4.85060 4.91474 4.93233 5.00864 5.07506 5.22024 5.28939 5.48518 5.66841 5.77239 5.87831 6.48250 6.73853 6.78012 7.26565 7.37264 7.77368 8.70623 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017228 B = 0.002597 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.852550 B =10777.115355 C =11742.649433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.232 1.232 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.576 5.576 10 C 0.445 3.555 11 O -0.615 6.615 12 C 0.137 3.863 13 N -0.730 5.730 14 C 0.715 3.285 15 O -0.616 6.616 16 N -0.626 5.626 17 C 0.129 3.871 18 C -0.093 4.093 19 C -0.080 4.080 20 C 0.080 3.920 21 F -0.135 7.135 22 C -0.114 4.114 23 C -0.120 4.120 24 C 0.083 3.917 25 F -0.139 7.139 26 C -0.111 4.111 27 C 0.151 3.849 28 H 0.281 0.719 29 H 0.392 0.608 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.407 0.593 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.175 0.825 38 H 0.173 0.827 39 H 0.086 0.914 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.535 -16.719 4.542 28.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.779 3.221 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.155 1.155 7 C -0.460 4.460 8 H 0.081 0.919 9 N -0.216 5.216 10 C 0.232 3.768 11 O -0.501 6.501 12 C 0.008 3.992 13 N -0.389 5.389 14 C 0.416 3.584 15 O -0.497 6.497 16 N -0.363 5.363 17 C 0.007 3.993 18 C -0.131 4.131 19 C -0.081 4.081 20 C 0.060 3.940 21 F -0.114 7.114 22 C -0.132 4.132 23 C -0.138 4.138 24 C 0.063 3.937 25 F -0.118 7.118 26 C -0.113 4.113 27 C 0.028 3.972 28 H 0.091 0.909 29 H 0.228 0.772 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.246 0.754 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.134 0.866 36 H 0.098 0.902 37 H 0.193 0.807 38 H 0.190 0.810 39 H 0.104 0.896 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 22.479 -16.597 4.475 28.298 hybrid contribution -0.825 0.634 0.022 1.041 sum 21.654 -15.963 4.498 27.275 Atomic orbital electron populations 1.69782 1.08058 1.29479 1.49261 1.26069 0.96422 1.02606 0.95669 0.85444 0.79589 0.76976 0.80108 1.18036 1.19852 1.15529 1.19026 0.80941 0.95274 1.50786 0.91887 1.41900 1.06125 1.07384 1.66209 1.20493 0.90019 0.83900 0.82377 1.90530 1.70785 1.32353 1.56433 1.20741 0.89333 0.83896 1.05195 1.44946 1.05718 1.09021 1.79250 1.15659 0.82012 0.83066 0.77627 1.90879 1.55581 1.43612 1.59645 1.47148 1.08486 1.03254 1.77386 1.21663 0.78647 1.02172 0.96789 1.20833 0.98393 0.95514 0.98358 1.19434 0.95354 0.97218 0.96082 1.17798 0.83432 0.97673 0.95078 1.91504 1.44172 1.96017 1.79660 1.21240 0.92568 0.98159 1.01231 1.21219 0.98198 0.99454 0.94977 1.17818 0.82289 0.97652 0.95963 1.91536 1.44157 1.95849 1.80251 1.19514 0.94401 0.97287 1.00115 1.20316 0.93256 0.85787 0.97829 0.90904 0.77167 0.87642 0.87910 0.75375 0.88385 0.88313 0.86611 0.90193 0.80744 0.80994 0.89558 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.49 13.96 21.66 0.30 -54.19 16 2 C -0.01 -0.42 5.50 84.92 0.47 0.05 16 3 Si 0.96 38.06 27.74 68.60 1.90 39.96 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 7 C -0.33 -18.84 10.16 84.04 0.85 -17.98 16 8 H 0.06 4.23 7.39 -2.91 -0.02 4.21 16 9 N -0.58 -26.53 5.09 -306.98 -1.56 -28.09 16 10 C 0.44 19.51 7.85 87.66 0.69 20.20 16 11 O -0.62 -31.94 15.24 -3.09 -0.05 -31.98 16 12 C 0.14 4.55 6.16 85.63 0.53 5.08 16 13 N -0.73 -23.39 5.44 -482.31 -2.62 -26.01 16 14 C 0.71 21.66 8.32 179.05 1.49 23.15 16 15 O -0.62 -21.63 15.84 -3.99 -0.06 -21.70 16 16 N -0.63 -14.57 2.94 -842.78 -2.48 -17.05 16 17 C 0.13 2.25 6.44 86.17 0.56 2.81 16 18 C -0.09 -1.44 5.57 29.75 0.17 -1.28 16 19 C -0.08 -1.38 5.77 -19.81 -0.11 -1.49 16 20 C 0.08 1.23 7.21 22.47 0.16 1.39 16 21 F -0.13 -2.16 16.40 44.97 0.74 -1.42 16 22 C -0.11 -1.34 10.01 22.24 0.22 -1.11 16 23 C -0.12 -1.57 10.02 22.25 0.22 -1.35 16 24 C 0.08 1.53 7.22 22.45 0.16 1.69 16 25 F -0.14 -3.06 16.60 44.97 0.75 -2.31 16 26 C -0.11 -2.13 5.81 -19.91 -0.12 -2.24 16 27 C 0.15 3.16 5.71 85.51 0.49 3.64 16 28 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.39 15.12 5.76 -92.71 -0.53 14.58 16 30 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.41 13.35 5.03 -92.71 -0.47 12.88 16 33 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.10 1.92 7.07 -2.39 -0.02 1.90 16 35 H 0.12 1.29 7.74 -2.39 -0.02 1.27 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 38 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.09 2.08 5.73 -2.38 -0.01 2.07 16 40 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -74.90 345.60 2.77 -72.13 By element: Atomic # 1 Polarization: 38.03 SS G_CDS: 0.08 Total: 38.11 kcal Atomic # 6 Polarization: 26.78 SS G_CDS: 5.78 Total: 32.56 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -6.36 Total: -125.34 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -0.11 Total: -53.68 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 1.48 Total: -3.73 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 1.90 Total: 39.96 kcal Total: -74.90 2.77 -72.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358299807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.063 kcal (2) G-P(sol) polarization free energy of solvation -74.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds