Wall clock time and date at job start Tue Mar 31 2020 22:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34763 * 116.99747 * 2 1 4 4 O 1.21537 * 120.00653 * 0.02562 * 3 2 1 5 5 C 1.47234 * 119.99834 * 180.02562 * 3 2 1 6 6 C 1.47065 * 127.19911 * 359.97438 * 5 3 2 7 7 C 1.34159 * 105.94464 * 179.97438 * 6 5 3 8 8 C 1.50706 * 125.42344 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46949 * 90.00098 * 8 7 6 10 10 C 1.34769 * 120.00237 * 180.02562 * 9 8 7 11 11 O 1.21587 * 120.00170 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00179 * 180.02562 * 10 9 8 13 13 C 1.46509 * 120.00229 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47377 * 179.97438 * 13 12 10 15 15 O 1.21296 * 119.99471 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99917 * 179.97438 * 14 13 12 17 17 C 1.37094 * 119.99823 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99873 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99884 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00020 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99782 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47367 * 59.99758 * 21 19 17 23 23 H 1.48496 * 109.46916 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47385 * 299.99959 * 21 19 17 25 25 O 1.34214 * 109.14934 * 0.24147 * 7 6 5 26 26 C 1.33628 * 110.92493 * 359.58433 * 25 7 6 27 27 C 1.50700 * 125.81051 * 180.13374 * 26 25 7 28 28 H 1.09004 * 109.47502 * 59.99723 * 1 2 3 29 29 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46743 * 299.99570 * 1 2 3 31 31 H 1.07991 * 127.02546 * 359.95918 * 6 5 3 32 32 H 1.09000 * 109.47318 * 209.99484 * 8 7 6 33 33 H 1.09000 * 109.47161 * 330.00115 * 8 7 6 34 34 H 0.97010 * 119.99909 * 359.97438 * 9 8 7 35 35 H 0.97004 * 120.00422 * 359.97438 * 12 10 9 36 36 H 1.09000 * 109.46533 * 300.00054 * 13 12 10 37 37 H 1.08996 * 109.47040 * 59.99304 * 13 12 10 38 38 H 0.96993 * 120.00013 * 0.02562 * 16 14 13 39 39 H 0.97003 * 120.00042 * 179.97438 * 20 19 17 40 40 H 1.09000 * 109.46758 * 270.32719 * 27 26 25 41 41 H 1.08995 * 109.46882 * 30.32647 * 27 26 25 42 42 H 1.09003 * 109.46931 * 150.32914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2201 0.0005 5 6 3.5341 1.2778 -0.0006 6 6 4.4833 0.1546 -0.0007 7 6 5.7065 0.7057 -0.0018 8 6 7.0074 -0.0551 -0.0018 9 7 7.4282 -0.3029 -1.3830 10 6 8.5715 -0.9725 -1.6294 11 8 9.2541 -1.3706 -0.7053 12 7 8.9589 -1.2000 -2.9000 13 6 10.2021 -1.9274 -3.1679 14 6 10.4035 -2.0471 -4.6565 15 8 9.5889 -1.5710 -5.4188 16 7 11.4892 -2.6820 -5.1408 17 6 11.6726 -2.7904 -6.4951 18 1 10.9469 -2.3672 -7.1739 19 6 12.7917 -3.4455 -6.9944 20 7 13.6739 -3.9616 -6.1684 21 14 13.0412 -3.5937 -8.8397 22 1 13.1225 -2.2374 -9.4388 23 1 14.3010 -4.3315 -9.1110 24 1 11.8983 -4.3306 -9.4362 25 8 5.5870 2.0425 0.0029 26 6 4.3014 2.4068 -0.0018 27 6 3.7862 3.8230 -0.0015 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 4.2445 -0.8986 0.0003 32 1 7.7707 0.5302 0.5110 33 1 6.8720 -1.0063 0.5130 34 1 6.8834 0.0143 -2.1204 35 1 8.4146 -0.8822 -3.6374 36 1 11.0409 -1.3867 -2.7296 37 1 10.1423 -2.9231 -2.7284 38 1 12.1407 -3.0623 -4.5312 39 1 14.4549 -4.4192 -6.5170 40 1 3.6633 4.1646 1.0262 41 1 4.4977 4.4685 -0.5164 42 1 2.8250 3.8600 -0.5142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358317791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:10 Heat of formation + Delta-G solvation = -135.842528 kcal Electronic energy + Delta-G solvation = -27584.304803 eV Core-core repulsion = 23145.671348 eV Total energy + Delta-G solvation = -4438.633454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.17326 -40.51628 -39.88479 -38.23108 -36.87048 -35.34726 -34.41492 -33.67882 -33.63880 -32.34912 -31.37825 -29.37006 -28.27292 -27.22698 -25.31092 -24.32380 -23.67810 -21.90168 -20.84198 -20.03881 -19.60846 -18.73137 -18.16537 -17.86577 -17.19981 -16.96265 -16.51017 -16.23764 -15.93761 -15.67101 -15.58005 -14.70509 -14.56047 -14.46553 -14.26882 -13.95059 -13.83383 -13.68585 -13.60463 -13.49612 -13.35404 -13.14640 -12.91784 -12.54232 -12.19279 -12.11056 -11.87655 -11.63195 -11.21357 -11.10726 -10.97591 -10.51065 -10.38842 -10.31907 -10.16684 -9.62947 -9.31872 -9.05464 -8.68144 -8.63365 -8.10355 -6.51544 -3.93639 0.67027 1.32035 2.03644 2.38500 2.58609 2.89944 3.13528 3.21542 3.25538 3.31213 3.74595 3.84667 4.08656 4.20676 4.38751 4.41732 4.68304 4.69945 4.77705 4.88792 4.90487 4.99015 5.00627 5.11084 5.15358 5.17053 5.30624 5.41581 5.58867 5.79140 5.89132 5.95238 5.99036 6.07047 6.27407 6.54864 6.70018 6.97621 7.33922 7.45620 7.91846 8.14039 8.44834 8.69684 9.04333 9.39107 9.87048 10.65183 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.001673 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.254251 B =16731.057233 C =17220.083439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.351 6.351 3 C 0.544 3.456 4 O -0.512 6.512 5 C -0.242 4.242 6 C -0.135 4.135 7 C -0.032 4.032 8 C 0.224 3.776 9 N -0.750 5.750 10 C 0.708 3.292 11 O -0.596 6.596 12 N -0.722 5.722 13 C 0.128 3.872 14 C 0.428 3.572 15 O -0.598 6.598 16 N -0.548 5.548 17 C -0.306 4.306 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.894 5.894 21 Si 0.934 3.066 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 O -0.161 6.161 26 C 0.106 3.894 27 C -0.089 4.089 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.168 0.832 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.400 0.600 35 H 0.408 0.592 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.362 10.097 15.265 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.267 6.267 3 C 0.390 3.610 4 O -0.402 6.402 5 C -0.245 4.245 6 C -0.155 4.155 7 C -0.080 4.080 8 C 0.100 3.900 9 N -0.407 5.407 10 C 0.408 3.592 11 O -0.474 6.474 12 N -0.379 5.379 13 C 0.000 4.000 14 C 0.213 3.787 15 O -0.485 6.485 16 N -0.183 5.183 17 C -0.435 4.435 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.534 5.534 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 O -0.056 6.056 26 C 0.053 3.947 27 C -0.145 4.145 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.185 0.815 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.234 0.766 35 H 0.245 0.755 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -21.006 10.362 15.552 28.115 hybrid contribution -0.246 -0.224 -1.209 1.254 sum -21.252 10.138 14.343 27.571 Atomic orbital electron populations 1.23312 0.75694 1.03967 1.02667 1.86575 1.23656 1.32235 1.84230 1.19888 0.87343 0.81508 0.72268 1.90828 1.66522 1.35848 1.47048 1.20132 0.90793 0.93828 1.19729 1.22761 0.89917 0.99965 1.02889 1.22209 0.97196 0.79803 1.08779 1.19411 0.88668 0.98012 0.83861 1.45068 1.25292 1.62458 1.07924 1.15745 0.80876 0.79004 0.83596 1.90924 1.55533 1.57511 1.43460 1.44763 1.26342 1.60688 1.06113 1.20807 0.86248 0.97425 0.95512 1.19756 0.84708 0.85291 0.88905 1.90494 1.45737 1.53427 1.58851 1.41774 1.20138 1.48109 1.08286 1.19678 1.07419 1.34405 0.82036 0.87741 1.25324 0.95422 0.96307 1.00640 1.69605 1.11953 1.36417 1.35446 0.85869 0.77654 0.78627 0.81783 1.19797 1.20857 1.19796 1.83792 1.26895 1.24250 1.70698 1.22908 0.80209 0.96776 0.94855 1.20734 1.02616 0.86278 1.04875 0.91705 0.87817 0.91760 0.81475 0.89474 0.87928 0.76555 0.75490 0.89905 0.89892 0.76994 0.91531 0.88719 0.89548 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.28 16 2 O -0.35 -3.18 10.48 -40.66 -0.43 -3.60 16 3 C 0.54 5.53 7.95 34.39 0.27 5.80 16 4 O -0.51 -5.80 14.64 -19.29 -0.28 -6.08 16 5 C -0.24 -2.33 6.32 -103.29 -0.65 -2.99 16 6 C -0.14 -1.18 10.93 -37.44 -0.41 -1.59 16 7 C -0.03 -0.29 6.65 -35.74 -0.24 -0.52 16 8 C 0.22 2.14 6.19 -5.19 -0.03 2.10 16 9 N -0.75 -8.49 5.55 -66.41 -0.37 -8.86 16 10 C 0.71 10.91 8.57 -86.93 -0.74 10.17 16 11 O -0.60 -11.01 16.34 5.29 0.09 -10.92 16 12 N -0.72 -11.76 5.53 -66.41 -0.37 -12.13 16 13 C 0.13 2.33 6.15 -5.19 -0.03 2.30 16 14 C 0.43 9.69 7.85 -10.99 -0.09 9.61 16 15 O -0.60 -15.14 15.24 5.54 0.08 -15.06 16 16 N -0.55 -13.47 5.29 -10.96 -0.06 -13.53 16 17 C -0.31 -8.26 9.68 -14.93 -0.14 -8.40 16 18 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 20 N -0.89 -23.71 13.05 55.50 0.72 -22.98 16 21 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 25 O -0.16 -1.52 10.52 7.72 0.08 -1.44 16 26 C 0.11 0.94 7.38 -34.93 -0.26 0.68 16 27 C -0.09 -0.55 9.89 36.01 0.36 -0.19 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.40 3.89 8.48 -40.82 -0.35 3.54 16 35 H 0.41 6.49 7.45 -40.82 -0.30 6.19 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.40 9.35 7.90 -40.82 -0.32 9.02 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.11 0.75 6.49 -51.93 -0.34 0.42 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -33.62 378.25 -5.89 -39.52 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -5.05 Total: 15.16 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: -1.00 Total: 18.83 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.07 Total: -57.50 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.46 Total: -37.11 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.62 -5.89 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358317791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.327 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds