Wall clock time and date at job start Tue Mar 31 2020 22:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34763 * 116.99747 * 2 1 4 4 O 1.21537 * 120.00653 * 0.02562 * 3 2 1 5 5 C 1.47234 * 119.99834 * 180.02562 * 3 2 1 6 6 C 1.47065 * 127.19911 * 359.97438 * 5 3 2 7 7 C 1.34159 * 105.94464 * 179.97438 * 6 5 3 8 8 C 1.50706 * 125.42344 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46949 * 90.00098 * 8 7 6 10 10 C 1.34769 * 120.00237 * 180.02562 * 9 8 7 11 11 O 1.21587 * 120.00170 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00179 * 180.02562 * 10 9 8 13 13 C 1.46509 * 120.00229 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47377 * 179.97438 * 13 12 10 15 15 O 1.21296 * 119.99471 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99917 * 179.97438 * 14 13 12 17 17 C 1.37094 * 119.99823 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99873 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99884 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00020 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99782 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47367 * 59.99758 * 21 19 17 23 23 H 1.48496 * 109.46916 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47385 * 299.99959 * 21 19 17 25 25 O 1.34214 * 109.14934 * 0.24147 * 7 6 5 26 26 C 1.33628 * 110.92493 * 359.58433 * 25 7 6 27 27 C 1.50700 * 125.81051 * 180.13374 * 26 25 7 28 28 H 1.09004 * 109.47502 * 59.99723 * 1 2 3 29 29 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46743 * 299.99570 * 1 2 3 31 31 H 1.07991 * 127.02546 * 359.95918 * 6 5 3 32 32 H 1.09000 * 109.47318 * 209.99484 * 8 7 6 33 33 H 1.09000 * 109.47161 * 330.00115 * 8 7 6 34 34 H 0.97010 * 119.99909 * 359.97438 * 9 8 7 35 35 H 0.97004 * 120.00422 * 359.97438 * 12 10 9 36 36 H 1.09000 * 109.46533 * 300.00054 * 13 12 10 37 37 H 1.08996 * 109.47040 * 59.99304 * 13 12 10 38 38 H 0.96993 * 120.00013 * 0.02562 * 16 14 13 39 39 H 0.97003 * 120.00042 * 179.97438 * 20 19 17 40 40 H 1.09000 * 109.46758 * 270.32719 * 27 26 25 41 41 H 1.08995 * 109.46882 * 30.32647 * 27 26 25 42 42 H 1.09003 * 109.46931 * 150.32914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2201 0.0005 5 6 3.5341 1.2778 -0.0006 6 6 4.4833 0.1546 -0.0007 7 6 5.7065 0.7057 -0.0018 8 6 7.0074 -0.0551 -0.0018 9 7 7.4282 -0.3029 -1.3830 10 6 8.5715 -0.9725 -1.6294 11 8 9.2541 -1.3706 -0.7053 12 7 8.9589 -1.2000 -2.9000 13 6 10.2021 -1.9274 -3.1679 14 6 10.4035 -2.0471 -4.6565 15 8 9.5889 -1.5710 -5.4188 16 7 11.4892 -2.6820 -5.1408 17 6 11.6726 -2.7904 -6.4951 18 1 10.9469 -2.3672 -7.1739 19 6 12.7917 -3.4455 -6.9944 20 7 13.6739 -3.9616 -6.1684 21 14 13.0412 -3.5937 -8.8397 22 1 13.1225 -2.2374 -9.4388 23 1 14.3010 -4.3315 -9.1110 24 1 11.8983 -4.3306 -9.4362 25 8 5.5870 2.0425 0.0029 26 6 4.3014 2.4068 -0.0018 27 6 3.7862 3.8230 -0.0015 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 4.2445 -0.8986 0.0003 32 1 7.7707 0.5302 0.5110 33 1 6.8720 -1.0063 0.5130 34 1 6.8834 0.0143 -2.1204 35 1 8.4146 -0.8822 -3.6374 36 1 11.0409 -1.3867 -2.7296 37 1 10.1423 -2.9231 -2.7284 38 1 12.1407 -3.0623 -4.5312 39 1 14.4549 -4.4192 -6.5170 40 1 3.6633 4.1646 1.0262 41 1 4.4977 4.4685 -0.5164 42 1 2.8250 3.8600 -0.5142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358317791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:09 Heat of formation + Delta-G solvation = -160.905499 kcal Electronic energy + Delta-G solvation = -27585.391615 eV Core-core repulsion = 23145.671348 eV Total energy + Delta-G solvation = -4439.720266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.87009 -41.25294 -41.15552 -40.00130 -37.57782 -36.43722 -36.10204 -35.25522 -34.33100 -33.37393 -33.05973 -30.24612 -29.09421 -28.35992 -26.52942 -25.68957 -24.40475 -22.58969 -22.04384 -21.34737 -20.76122 -20.12016 -19.76836 -18.79280 -18.03738 -17.75396 -17.41301 -17.21662 -17.02820 -16.90814 -16.76958 -16.45077 -15.89794 -15.85426 -15.44937 -15.10686 -14.93736 -14.61872 -14.34959 -14.26999 -14.04207 -13.92086 -13.85833 -13.67154 -13.52068 -13.40850 -13.03004 -12.88511 -12.69767 -12.45159 -12.12759 -11.83392 -11.71851 -11.54464 -11.53835 -11.03879 -10.53433 -10.47364 -10.08647 -9.87559 -9.74856 -8.49055 -5.99131 -0.02949 0.57610 1.35844 1.39516 1.44032 1.54464 1.67215 1.81575 1.92165 1.92514 2.10306 2.30517 3.07393 3.16348 3.18280 3.35146 3.56495 3.75362 4.02416 4.20867 4.23612 4.28769 4.33209 4.37253 4.47613 4.50238 4.51868 4.56290 4.61702 4.69602 4.78721 5.05589 5.12763 5.28687 5.29978 5.32914 5.40426 5.86025 5.87387 5.94641 6.50382 6.62584 6.97070 7.05526 7.43433 7.50800 7.97155 8.67453 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.001673 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.254251 B =16731.057233 C =17220.083439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.542 3.458 4 O -0.530 6.530 5 C -0.264 4.264 6 C -0.128 4.128 7 C -0.036 4.036 8 C 0.226 3.774 9 N -0.734 5.734 10 C 0.711 3.289 11 O -0.625 6.625 12 N -0.724 5.724 13 C 0.142 3.858 14 C 0.433 3.567 15 O -0.625 6.625 16 N -0.559 5.559 17 C -0.338 4.338 18 H 0.086 0.914 19 C -0.010 4.010 20 N -0.915 5.915 21 Si 0.996 3.004 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.270 1.270 25 O -0.168 6.168 26 C 0.110 3.890 27 C -0.088 4.088 28 H 0.064 0.936 29 H 0.131 0.869 30 H 0.066 0.934 31 H 0.181 0.819 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.410 0.590 35 H 0.410 0.590 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.943 10.222 15.494 28.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.389 3.611 4 O -0.423 6.423 5 C -0.267 4.267 6 C -0.148 4.148 7 C -0.084 4.084 8 C 0.103 3.897 9 N -0.391 5.391 10 C 0.410 3.590 11 O -0.507 6.507 12 N -0.381 5.381 13 C 0.013 3.987 14 C 0.220 3.780 15 O -0.513 6.513 16 N -0.195 5.195 17 C -0.467 4.467 18 H 0.104 0.896 19 C -0.211 4.211 20 N -0.555 5.555 21 Si 0.820 3.180 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.195 1.195 25 O -0.064 6.064 26 C 0.056 3.944 27 C -0.144 4.144 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.085 0.915 31 H 0.198 0.802 32 H 0.104 0.896 33 H 0.131 0.869 34 H 0.246 0.754 35 H 0.248 0.752 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.234 0.766 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.622 10.496 15.803 28.765 hybrid contribution -0.182 -0.220 -1.213 1.246 sum -21.805 10.276 14.590 28.177 Atomic orbital electron populations 1.23594 0.74059 1.05836 1.02804 1.86562 1.25345 1.31681 1.83902 1.20009 0.87583 0.81607 0.71873 1.90810 1.66947 1.36386 1.48110 1.20299 0.90870 0.94553 1.20952 1.22932 0.89565 1.00486 1.01836 1.22045 0.96902 0.79742 1.09711 1.19483 0.88874 0.98666 0.82638 1.44982 1.23924 1.60995 1.09231 1.15770 0.81494 0.79030 0.82676 1.90907 1.56768 1.58896 1.44100 1.44689 1.25849 1.60853 1.06701 1.20605 0.87615 0.98596 0.91839 1.20456 0.83418 0.83443 0.90683 1.90472 1.46434 1.54085 1.60348 1.41821 1.20943 1.48946 1.07741 1.19694 1.08010 1.35970 0.83051 0.89599 1.26112 0.94711 0.95444 1.04846 1.69671 1.12221 1.36525 1.37074 0.84937 0.77866 0.78634 0.76597 1.19563 1.19672 1.19539 1.83791 1.27257 1.24475 1.70874 1.23387 0.79852 0.97708 0.93422 1.20841 1.02500 0.85158 1.05897 0.91734 0.85137 0.91501 0.80191 0.89565 0.86873 0.75442 0.75231 0.88858 0.88738 0.76646 0.91092 0.87285 0.87899 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 113.37 1.20 1.51 16 2 O -0.36 -6.18 10.48 -56.73 -0.59 -6.77 16 3 C 0.54 10.71 7.95 70.19 0.56 11.27 16 4 O -0.53 -11.83 14.64 19.72 0.29 -11.54 16 5 C -0.26 -4.85 6.32 -19.00 -0.12 -4.97 16 6 C -0.13 -2.07 10.93 23.66 0.26 -1.81 16 7 C -0.04 -0.60 6.65 24.76 0.16 -0.44 16 8 C 0.23 3.96 6.19 85.63 0.53 4.49 16 9 N -0.73 -15.49 5.55 -482.30 -2.68 -18.17 16 10 C 0.71 20.94 8.57 179.06 1.53 22.47 16 11 O -0.63 -22.34 16.34 -3.99 -0.07 -22.40 16 12 N -0.72 -22.79 5.53 -482.29 -2.67 -25.46 16 13 C 0.14 5.03 6.15 85.63 0.53 5.56 16 14 C 0.43 19.60 7.85 87.66 0.69 20.29 16 15 O -0.63 -31.78 15.24 -3.08 -0.05 -31.83 16 16 N -0.56 -27.68 5.29 -306.98 -1.62 -29.30 16 17 C -0.34 -18.44 9.68 84.04 0.81 -17.63 16 18 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 19 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 20 N -0.92 -48.19 13.05 21.66 0.28 -47.91 16 21 Si 1.00 41.45 29.55 68.60 2.03 43.48 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 23 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 25 O -0.17 -2.96 10.52 4.69 0.05 -2.91 16 26 C 0.11 1.82 7.38 25.28 0.19 2.01 16 27 C -0.09 -0.98 9.89 71.24 0.70 -0.27 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.18 2.32 8.06 -2.92 -0.02 2.30 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.41 7.29 8.48 -92.70 -0.79 6.50 16 35 H 0.41 12.69 7.45 -92.71 -0.69 12.00 16 36 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 39 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 40 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.10 1.33 6.49 -2.39 -0.02 1.32 16 Total: -1.00 -71.08 378.25 1.39 -69.69 By element: Atomic # 1 Polarization: 41.81 SS G_CDS: -1.09 Total: 40.72 kcal Atomic # 6 Polarization: 34.90 SS G_CDS: 7.51 Total: 42.41 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -6.69 Total: -120.85 kcal Atomic # 8 Polarization: -75.08 SS G_CDS: -0.37 Total: -75.45 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -71.08 1.39 -69.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358317791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.214 kcal (2) G-P(sol) polarization free energy of solvation -71.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds