Wall clock time and date at job start Tue Mar 31 2020 22:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86798 * 120.00047 * 2 1 4 4 H 1.48495 * 109.47302 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47066 * 300.00479 * 3 2 1 6 6 H 1.48506 * 109.47084 * 60.00503 * 3 2 1 7 7 C 1.38804 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00103 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.80995 * 99.99768 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47490 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99425 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00456 * 179.97438 * 11 10 9 14 14 C 1.44676 * 118.54845 * 180.02562 * 13 11 10 15 15 C 1.54953 * 109.52300 * 269.05841 * 14 13 11 16 16 C 1.47541 * 109.73277 * 290.51991 * 15 14 13 17 17 N 1.46266 * 114.37444 * 62.21835 * 16 15 14 18 18 C 1.39145 * 111.00105 * 148.55063 * 17 16 15 19 19 N 1.32370 * 119.71516 * 0.02562 * 18 17 16 20 20 C 1.31983 * 121.64504 * 180.02562 * 19 18 17 21 21 C 1.38030 * 120.89981 * 359.97438 * 20 19 18 22 22 C 1.38855 * 119.34397 * 0.28065 * 21 20 19 23 23 C 1.38490 * 118.48495 * 359.45945 * 22 21 20 24 24 F 1.35104 * 120.46694 * 180.26728 * 23 22 21 25 25 C 1.44764 * 110.64502 * 272.25044 * 17 16 15 26 26 C 1.47776 * 118.54751 * 359.97438 * 13 11 10 27 27 H 0.97001 * 120.00115 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47431 * 60.00062 * 10 9 7 29 29 H 1.08997 * 109.47454 * 300.00227 * 10 9 7 30 30 H 1.08995 * 109.46356 * 149.04263 * 14 13 11 31 31 H 1.09007 * 109.45280 * 29.06457 * 14 13 11 32 32 H 1.08999 * 109.42537 * 170.44245 * 15 14 13 33 33 H 1.08992 * 109.38575 * 50.57537 * 15 14 13 34 34 H 1.08998 * 108.50544 * 300.95535 * 16 15 14 35 35 H 1.08998 * 108.50383 * 183.48676 * 16 15 14 36 36 H 1.08001 * 119.54769 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.32395 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.75571 * 179.69799 * 22 21 20 39 39 H 1.08991 * 109.43718 * 214.22381 * 25 17 16 40 40 H 1.09001 * 109.43148 * 334.09820 * 25 17 16 41 41 H 1.08998 * 109.06403 * 258.67125 * 26 13 11 42 42 H 1.09001 * 109.06475 * 17.60004 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0021 11 6 1.9873 -5.3028 -0.0017 12 8 0.7911 -5.5023 -0.0009 13 7 2.8441 -6.3431 -0.0033 14 6 2.3025 -7.6847 -0.0034 15 6 2.1326 -8.1747 1.4568 16 6 3.4583 -8.3946 2.0659 17 7 4.2856 -7.1922 2.1616 18 6 5.1170 -7.2463 3.2760 19 7 5.0767 -8.3016 4.0741 20 6 5.8478 -8.3926 5.1414 21 6 6.7312 -7.3828 5.4657 22 6 6.8020 -6.2553 4.6584 23 6 5.9849 -6.1898 3.5421 24 9 6.0250 -5.1138 2.7260 25 6 5.0543 -7.0037 0.9495 26 6 4.2950 -6.0631 -0.0059 27 1 -0.4850 0.8400 0.0004 28 1 3.1251 -3.7318 0.8875 29 1 3.1237 -3.7309 -0.8924 30 1 2.9832 -8.3511 -0.5331 31 1 1.3330 -7.6848 -0.5016 32 1 1.5715 -9.1091 1.4626 33 1 1.5905 -7.4227 2.0300 34 1 3.9931 -9.1360 1.4723 35 1 3.3158 -8.7972 3.0687 36 1 5.7873 -9.2694 5.7690 37 1 7.3576 -7.4667 6.3415 38 1 7.4815 -5.4494 4.8936 39 1 6.0210 -6.5656 1.1975 40 1 5.2073 -7.9673 0.4636 41 1 4.6811 -6.1944 -1.0167 42 1 4.4591 -5.0314 0.3053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375525122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:35 Heat of formation + Delta-G solvation = -8.420154 kcal Electronic energy + Delta-G solvation = -27510.728115 eV Core-core repulsion = 23532.745770 eV Total energy + Delta-G solvation = -3977.982345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.14244 -41.05491 -39.71495 -37.93982 -34.98580 -33.44141 -32.58759 -32.37109 -30.65051 -29.46593 -27.79768 -26.07599 -25.37186 -23.88108 -23.54437 -22.15315 -21.00030 -18.98293 -18.17937 -17.65600 -17.59552 -17.21346 -16.62593 -16.44471 -15.97240 -15.59324 -15.10092 -14.82130 -14.75388 -14.50427 -14.20848 -13.94843 -13.90878 -13.40821 -13.34539 -13.07702 -13.03658 -12.68239 -12.61475 -12.41688 -11.94583 -11.67135 -11.44364 -11.05249 -11.02116 -10.94527 -10.88393 -10.69779 -10.48382 -9.99894 -9.82180 -9.72052 -9.23164 -9.01904 -8.39518 -8.33513 -8.13745 -6.42510 -6.16129 -3.85449 0.60778 0.74033 2.91200 3.10879 3.18866 3.25040 3.25709 3.31116 3.35702 3.68910 3.87175 4.01214 4.25799 4.34326 4.51450 4.58363 4.66657 4.72615 4.87909 4.91150 5.13404 5.17451 5.18967 5.24347 5.26629 5.38091 5.49377 5.50207 5.58064 5.61068 5.61919 5.72680 5.80306 5.99866 6.02996 6.15636 6.22326 6.23923 6.52470 6.76842 6.89848 7.49721 7.60267 7.65797 8.41369 8.69707 9.29323 10.91412 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.003425 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.180928 B = 8172.578883 C = 9718.858922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.072 0.928 9 S -0.063 6.063 10 C -0.150 4.150 11 C 0.534 3.466 12 O -0.518 6.518 13 N -0.606 5.606 14 C 0.119 3.881 15 C -0.137 4.137 16 C 0.059 3.941 17 N -0.460 5.460 18 C 0.296 3.704 19 N -0.499 5.499 20 C 0.117 3.883 21 C -0.179 4.179 22 C -0.085 4.085 23 C 0.031 3.969 24 F -0.121 7.121 25 C 0.042 3.958 26 C 0.117 3.883 27 H 0.267 0.733 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.097 0.903 36 H 0.163 0.837 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.138 -20.204 7.564 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.680 4.680 8 H 0.091 0.909 9 S 0.163 5.837 10 C -0.300 4.300 11 C 0.322 3.678 12 O -0.392 6.392 13 N -0.342 5.342 14 C -0.005 4.005 15 C -0.176 4.176 16 C -0.067 4.067 17 N -0.175 5.175 18 C 0.063 3.937 19 N -0.213 5.213 20 C -0.041 4.041 21 C -0.200 4.200 22 C -0.112 4.112 23 C 0.006 3.994 24 F -0.099 7.099 25 C -0.085 4.085 26 C -0.007 4.007 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.115 0.885 36 H 0.180 0.820 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.277 -20.653 7.292 26.145 hybrid contribution 3.075 1.660 0.176 3.498 sum 17.351 -18.993 7.468 26.788 Atomic orbital electron populations 1.70034 1.05929 1.27219 1.47184 1.24984 0.95006 0.98967 0.94657 0.86136 0.79632 0.82003 0.77847 1.19614 1.20609 1.20610 1.22906 0.94914 0.91680 1.58501 0.90949 1.85361 1.05268 0.96366 1.96663 1.23562 1.06266 0.95653 1.04564 1.20310 0.86254 0.86375 0.74862 1.90679 1.15195 1.85356 1.47965 1.47572 1.05659 1.05802 1.75136 1.21377 1.00153 0.82880 0.96090 1.21420 0.96447 1.02453 0.97289 1.21063 0.94010 0.87983 1.03623 1.57892 1.19308 1.39255 1.01074 1.20003 0.90206 0.89294 0.94223 1.67679 1.24608 1.22295 1.06738 1.22637 0.90509 0.98413 0.92502 1.21915 1.01946 0.94425 1.01712 1.21588 0.97792 0.99400 0.92413 1.18110 1.01568 0.86222 0.93472 1.91542 1.95516 1.52252 1.70638 1.22673 0.96535 1.00602 0.88718 1.22025 0.80118 1.00584 0.97988 0.92325 0.89169 0.89531 0.91542 0.89467 0.89879 0.90398 0.93640 0.88452 0.81957 0.83883 0.83336 0.89268 0.91964 0.90989 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.67 13.22 55.49 0.73 -25.94 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -15.52 9.50 30.94 0.29 -15.22 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.06 -1.78 20.57 -107.50 -2.21 -3.99 16 10 C -0.15 -3.21 4.48 36.01 0.16 -3.05 16 11 C 0.53 10.64 7.64 -10.99 -0.08 10.56 16 12 O -0.52 -12.18 15.26 5.56 0.08 -12.10 16 13 N -0.61 -9.02 2.53 -172.19 -0.44 -9.46 16 14 C 0.12 1.50 5.44 -3.99 -0.02 1.47 16 15 C -0.14 -1.62 6.02 -28.33 -0.17 -1.79 16 16 C 0.06 0.65 4.63 -6.80 -0.03 0.62 16 17 N -0.46 -5.60 4.14 -177.79 -0.74 -6.34 16 18 C 0.30 3.48 6.36 -154.85 -0.98 2.50 16 19 N -0.50 -5.28 8.11 -12.36 -0.10 -5.38 16 20 C 0.12 0.89 11.17 -17.56 -0.20 0.70 16 21 C -0.18 -1.18 10.10 -39.43 -0.40 -1.58 16 22 C -0.09 -0.71 10.15 -39.26 -0.40 -1.11 16 23 C 0.03 0.35 6.64 -39.10 -0.26 0.09 16 24 F -0.12 -1.54 15.28 2.25 0.03 -1.50 16 25 C 0.04 0.43 4.89 -4.41 -0.02 0.41 16 26 C 0.12 1.38 6.30 -2.78 -0.02 1.37 16 27 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.09 1.87 7.41 -51.91 -0.38 1.49 16 29 H 0.09 1.71 8.03 -51.92 -0.42 1.29 16 30 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 31 H 0.09 1.24 7.24 -51.93 -0.38 0.86 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.43 7.18 -51.93 -0.37 0.06 16 35 H 0.10 1.12 6.39 -51.93 -0.33 0.79 16 36 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.09 0.86 5.69 -51.93 -0.30 0.57 16 40 H 0.06 0.53 7.14 -51.93 -0.37 0.16 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.24 5.83 -51.93 -0.30 0.93 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -36.31 356.53 -9.86 -46.17 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.35 Total: -0.61 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.22 Total: -3.03 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.54 Total: -47.12 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.08 Total: -12.10 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.03 Total: -1.50 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -3.99 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.31 -9.86 -46.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375525122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.750 kcal (2) G-P(sol) polarization free energy of solvation -36.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds