Wall clock time and date at job start Tue Mar 31 2020 22:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86798 * 120.00047 * 2 1 4 4 H 1.48495 * 109.47302 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47066 * 300.00479 * 3 2 1 6 6 H 1.48506 * 109.47084 * 60.00503 * 3 2 1 7 7 C 1.38804 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00103 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.80995 * 99.99768 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47490 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99425 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00456 * 179.97438 * 11 10 9 14 14 C 1.44676 * 118.54845 * 180.02562 * 13 11 10 15 15 C 1.54953 * 109.52300 * 269.05841 * 14 13 11 16 16 C 1.47541 * 109.73277 * 290.51991 * 15 14 13 17 17 N 1.46266 * 114.37444 * 62.21835 * 16 15 14 18 18 C 1.39145 * 111.00105 * 148.55063 * 17 16 15 19 19 N 1.32370 * 119.71516 * 0.02562 * 18 17 16 20 20 C 1.31983 * 121.64504 * 180.02562 * 19 18 17 21 21 C 1.38030 * 120.89981 * 359.97438 * 20 19 18 22 22 C 1.38855 * 119.34397 * 0.28065 * 21 20 19 23 23 C 1.38490 * 118.48495 * 359.45945 * 22 21 20 24 24 F 1.35104 * 120.46694 * 180.26728 * 23 22 21 25 25 C 1.44764 * 110.64502 * 272.25044 * 17 16 15 26 26 C 1.47776 * 118.54751 * 359.97438 * 13 11 10 27 27 H 0.97001 * 120.00115 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47431 * 60.00062 * 10 9 7 29 29 H 1.08997 * 109.47454 * 300.00227 * 10 9 7 30 30 H 1.08995 * 109.46356 * 149.04263 * 14 13 11 31 31 H 1.09007 * 109.45280 * 29.06457 * 14 13 11 32 32 H 1.08999 * 109.42537 * 170.44245 * 15 14 13 33 33 H 1.08992 * 109.38575 * 50.57537 * 15 14 13 34 34 H 1.08998 * 108.50544 * 300.95535 * 16 15 14 35 35 H 1.08998 * 108.50383 * 183.48676 * 16 15 14 36 36 H 1.08001 * 119.54769 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.32395 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.75571 * 179.69799 * 22 21 20 39 39 H 1.08991 * 109.43718 * 214.22381 * 25 17 16 40 40 H 1.09001 * 109.43148 * 334.09820 * 25 17 16 41 41 H 1.08998 * 109.06403 * 258.67125 * 26 13 11 42 42 H 1.09001 * 109.06475 * 17.60004 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0021 11 6 1.9873 -5.3028 -0.0017 12 8 0.7911 -5.5023 -0.0009 13 7 2.8441 -6.3431 -0.0033 14 6 2.3025 -7.6847 -0.0034 15 6 2.1326 -8.1747 1.4568 16 6 3.4583 -8.3946 2.0659 17 7 4.2856 -7.1922 2.1616 18 6 5.1170 -7.2463 3.2760 19 7 5.0767 -8.3016 4.0741 20 6 5.8478 -8.3926 5.1414 21 6 6.7312 -7.3828 5.4657 22 6 6.8020 -6.2553 4.6584 23 6 5.9849 -6.1898 3.5421 24 9 6.0250 -5.1138 2.7260 25 6 5.0543 -7.0037 0.9495 26 6 4.2950 -6.0631 -0.0059 27 1 -0.4850 0.8400 0.0004 28 1 3.1251 -3.7318 0.8875 29 1 3.1237 -3.7309 -0.8924 30 1 2.9832 -8.3511 -0.5331 31 1 1.3330 -7.6848 -0.5016 32 1 1.5715 -9.1091 1.4626 33 1 1.5905 -7.4227 2.0300 34 1 3.9931 -9.1360 1.4723 35 1 3.3158 -8.7972 3.0687 36 1 5.7873 -9.2694 5.7690 37 1 7.3576 -7.4667 6.3415 38 1 7.4815 -5.4494 4.8936 39 1 6.0210 -6.5656 1.1975 40 1 5.2073 -7.9673 0.4636 41 1 4.6811 -6.1944 -1.0167 42 1 4.4591 -5.0314 0.3053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375525122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:34 Heat of formation + Delta-G solvation = -32.224108 kcal Electronic energy + Delta-G solvation = -27511.760332 eV Core-core repulsion = 23532.745770 eV Total energy + Delta-G solvation = -3979.014562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.97304 -41.88212 -40.88904 -38.99580 -36.19326 -34.59473 -34.42628 -33.27846 -31.41779 -31.02367 -28.74627 -27.74305 -26.95742 -24.65584 -24.33628 -23.19406 -21.85025 -20.42693 -19.58442 -18.82164 -18.42150 -18.11842 -17.87931 -17.66682 -16.89460 -16.83878 -16.72064 -16.09458 -15.90140 -15.76884 -15.41713 -14.91100 -14.87641 -14.60097 -14.52277 -14.30974 -13.97697 -13.92551 -13.64690 -13.44775 -13.27052 -13.16669 -12.92410 -12.73922 -12.63142 -12.35575 -11.98696 -11.81817 -11.69333 -11.18942 -11.16473 -10.86441 -10.67256 -10.53272 -10.27140 -9.63118 -9.07241 -8.67978 -8.35418 -6.13687 -0.05920 0.10413 1.25702 1.40245 1.45035 1.56609 1.60910 2.08226 2.26509 2.35346 2.59906 2.98389 3.14329 3.24497 3.37299 3.65921 3.69445 3.78781 3.83686 3.90269 4.02391 4.13696 4.21591 4.27582 4.36521 4.42447 4.44485 4.46388 4.57885 4.66350 4.69514 4.74732 4.86474 4.93880 5.04439 5.07840 5.23516 5.40637 5.48104 5.70272 5.75410 6.01788 6.19036 6.24592 6.83121 7.05475 7.19335 8.74301 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.003425 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.180928 B = 8172.578883 C = 9718.858922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.080 0.920 9 S -0.151 6.151 10 C -0.121 4.121 11 C 0.530 3.470 12 O -0.565 6.565 13 N -0.590 5.590 14 C 0.115 3.885 15 C -0.128 4.128 16 C 0.065 3.935 17 N -0.486 5.486 18 C 0.277 3.723 19 N -0.517 5.517 20 C 0.113 3.887 21 C -0.165 4.165 22 C -0.086 4.086 23 C -0.001 4.001 24 F -0.138 7.138 25 C 0.049 3.951 26 C 0.109 3.891 27 H 0.271 0.729 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.195 0.805 37 H 0.181 0.819 38 H 0.168 0.832 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.583 -21.474 8.362 30.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.098 0.902 9 S 0.076 5.924 10 C -0.272 4.272 11 C 0.318 3.682 12 O -0.444 6.444 13 N -0.323 5.323 14 C -0.008 4.008 15 C -0.167 4.167 16 C -0.061 4.061 17 N -0.202 5.202 18 C 0.044 3.956 19 N -0.231 5.231 20 C -0.044 4.044 21 C -0.185 4.185 22 C -0.112 4.112 23 C -0.025 4.025 24 F -0.117 7.117 25 C -0.078 4.078 26 C -0.013 4.013 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.212 0.788 37 H 0.198 0.802 38 H 0.185 0.815 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.122 0.878 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.772 -21.965 8.092 29.390 hybrid contribution 2.098 1.882 0.041 2.819 sum 19.870 -20.082 8.133 29.398 Atomic orbital electron populations 1.70195 1.07970 1.28548 1.48053 1.26140 0.95992 1.03298 0.93683 0.84899 0.78566 0.76236 0.78203 1.18107 1.19633 1.19851 1.23205 0.95206 0.91996 1.58852 0.90228 1.85512 1.10658 0.99254 1.96977 1.23357 1.03190 0.95062 1.05596 1.20085 0.86126 0.86793 0.75210 1.90657 1.17129 1.85860 1.50715 1.47572 1.06511 1.05494 1.72677 1.21612 1.00243 0.82021 0.96936 1.21364 0.97097 1.02173 0.96031 1.20991 0.93405 0.88246 1.03493 1.57893 1.20330 1.40024 1.01970 1.20044 0.90907 0.90065 0.94562 1.67688 1.25538 1.22224 1.07660 1.23300 0.89631 0.99687 0.91778 1.22341 1.01259 0.92958 1.01950 1.21946 0.97238 1.00565 0.91475 1.18449 1.03221 0.86098 0.94740 1.91487 1.95794 1.53074 1.71360 1.22649 0.96011 1.01225 0.87939 1.22319 0.78174 1.00417 1.00421 0.91965 0.88696 0.87654 0.87379 0.91413 0.87395 0.94750 0.91377 0.89134 0.78795 0.80155 0.81456 0.88781 0.89520 0.87773 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.47 13.22 21.65 0.29 -57.18 16 2 C 0.01 0.79 5.49 84.86 0.47 1.26 16 3 Si 1.00 44.91 29.55 68.60 2.03 46.94 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.54 -32.47 9.50 67.96 0.65 -31.82 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.88 20.57 -56.49 -1.16 -10.04 16 10 C -0.12 -5.33 4.48 71.24 0.32 -5.01 16 11 C 0.53 21.80 7.64 87.66 0.67 22.47 16 12 O -0.56 -28.04 15.26 -3.03 -0.05 -28.09 16 13 N -0.59 -17.28 2.53 -817.06 -2.07 -19.35 16 14 C 0.11 2.77 5.44 87.39 0.48 3.24 16 15 C -0.13 -2.97 6.02 29.56 0.18 -2.79 16 16 C 0.06 1.33 4.63 84.72 0.39 1.72 16 17 N -0.49 -11.41 4.14 -716.39 -2.96 -14.37 16 18 C 0.28 6.24 6.36 133.06 0.85 7.09 16 19 N -0.52 -10.05 8.11 -193.03 -1.57 -11.62 16 20 C 0.11 1.40 11.17 84.62 0.95 2.35 16 21 C -0.16 -1.62 10.10 22.37 0.23 -1.39 16 22 C -0.09 -1.25 10.15 22.48 0.23 -1.02 16 23 C 0.00 -0.01 6.64 22.58 0.15 0.14 16 24 F -0.14 -3.53 15.28 44.97 0.69 -2.84 16 25 C 0.05 0.90 4.89 87.07 0.43 1.33 16 26 C 0.11 2.42 6.30 86.50 0.55 2.97 16 27 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 28 H 0.09 4.06 7.41 -2.39 -0.02 4.04 16 29 H 0.11 4.18 8.03 -2.40 -0.02 4.16 16 30 H 0.11 1.75 8.09 -2.39 -0.02 1.73 16 31 H 0.07 1.94 7.24 -2.38 -0.02 1.92 16 32 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.08 7.18 -2.39 -0.02 1.07 16 35 H 0.09 2.00 6.39 -2.39 -0.02 1.98 16 36 H 0.20 1.00 8.06 -2.91 -0.02 0.97 16 37 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 38 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.09 1.69 5.69 -2.39 -0.01 1.67 16 40 H 0.09 1.18 7.14 -2.39 -0.02 1.16 16 41 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.08 2.00 5.83 -2.39 -0.01 1.98 16 Total: -1.00 -84.29 356.53 2.75 -81.53 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.05 Total: 14.51 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 6.51 Total: 0.52 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -6.31 Total: -102.52 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.09 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.69 Total: -2.84 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal Total: -84.29 2.75 -81.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375525122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.308 kcal (2) G-P(sol) polarization free energy of solvation -84.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds