Wall clock time and date at job start Tue Mar 31 2020 22:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 117.00020 * 2 1 4 4 O 1.20829 * 119.99841 * 359.97438 * 3 2 1 5 5 C 1.50692 * 119.99898 * 180.02562 * 3 2 1 6 6 H 1.09001 * 110.30932 * 57.82218 * 5 3 2 7 7 C 1.54393 * 110.34322 * 295.53267 * 5 3 2 8 8 N 1.48146 * 104.61829 * 264.99938 * 7 5 3 9 9 C 1.34777 * 127.83681 * 140.41123 * 8 7 5 10 10 O 1.21688 * 119.99949 * 180.02562 * 9 8 7 11 11 C 1.46373 * 120.00217 * 0.02647 * 9 8 7 12 12 H 1.07998 * 120.00066 * 359.97438 * 11 9 8 13 13 C 1.40044 * 120.00288 * 180.02562 * 11 9 8 14 14 N 1.30674 * 119.99847 * 359.97438 * 13 11 9 15 15 Si 1.86792 * 120.00461 * 179.97438 * 13 11 9 16 16 H 1.48511 * 109.46997 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47351 * 119.99649 * 15 13 11 18 18 H 1.48495 * 109.47411 * 240.00221 * 15 13 11 19 19 C 1.48314 * 104.39041 * 320.47054 * 8 7 5 20 20 C 1.54284 * 110.34307 * 179.97438 * 5 3 2 21 21 H 1.08999 * 110.34382 * 359.89588 * 20 5 3 22 22 C 1.50696 * 110.34418 * 237.74022 * 20 5 3 23 23 C 1.38230 * 119.98825 * 301.45199 * 22 20 5 24 24 C 1.38186 * 120.05312 * 179.97438 * 23 22 20 25 25 C 1.38503 * 120.02165 * 0.03870 * 24 23 22 26 26 F 1.35096 * 120.00694 * 180.02562 * 25 24 23 27 27 C 1.38390 * 119.97648 * 359.97438 * 25 24 23 28 28 C 1.38445 * 119.95081 * 359.97438 * 27 25 24 29 29 F 1.35101 * 120.01390 * 179.72859 * 28 27 25 30 30 H 1.09004 * 109.47054 * 59.99998 * 1 2 3 31 31 H 1.09003 * 109.47120 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47001 * 300.00150 * 1 2 3 33 33 H 1.09007 * 110.40422 * 23.78334 * 7 5 3 34 34 H 1.08995 * 110.40737 * 146.20866 * 7 5 3 35 35 H 0.97003 * 120.00388 * 180.02562 * 14 13 11 36 36 H 1.09003 * 110.38325 * 280.73542 * 19 8 7 37 37 H 1.09002 * 110.50513 * 158.25342 * 19 8 7 38 38 H 1.08000 * 119.97299 * 359.97438 * 23 22 20 39 39 H 1.07994 * 119.99243 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.02409 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9722 0.7512 -0.8661 7 6 4.1354 0.6795 1.3053 8 7 4.3221 1.8469 2.1981 9 6 4.0817 1.9219 3.5222 10 8 4.2869 2.9618 4.1199 11 6 3.5739 0.7525 4.2412 12 1 3.3914 -0.1704 3.7107 13 6 3.3235 0.8305 5.6169 14 7 3.5439 1.9472 6.2587 15 14 2.6748 -0.6616 6.5344 16 1 2.5116 -1.7932 5.5866 17 1 3.6357 -1.0439 7.6000 18 1 1.3618 -0.3343 7.1460 19 6 4.8322 2.9158 1.3055 20 6 4.0262 2.7475 -0.0011 21 1 3.1637 3.4139 -0.0028 22 6 4.9018 3.0225 -1.1964 23 6 6.0639 2.2975 -1.3829 24 6 6.8675 2.5482 -2.4788 25 6 6.5098 3.5269 -3.3911 26 9 7.2954 3.7714 -4.4626 27 6 5.3468 4.2536 -3.2052 28 6 4.5418 4.0008 -2.1075 29 9 3.4090 4.7132 -1.9218 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.4270 -0.0240 1.7427 34 1 5.0904 0.1898 1.1152 35 1 3.3709 2.0013 7.2117 36 1 5.8966 2.7764 1.1159 37 1 4.6484 3.8977 1.7417 38 1 6.3439 1.5345 -0.6717 39 1 7.7750 1.9809 -2.6238 40 1 5.0669 5.0167 -3.9163 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425024742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:33 Heat of formation + Delta-G solvation = -177.512615 kcal Electronic energy + Delta-G solvation = -29795.607836 eV Core-core repulsion = 25211.787165 eV Total energy + Delta-G solvation = -4583.820671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.20241 -49.05336 -40.73154 -39.38559 -37.95024 -36.40034 -35.65118 -32.61572 -32.16404 -30.99116 -30.24503 -28.30777 -27.33578 -26.20591 -23.91970 -23.48841 -23.01056 -21.41442 -19.74030 -19.22861 -18.43452 -17.69963 -17.30855 -16.72935 -16.60759 -16.27953 -16.10150 -15.89331 -15.63688 -15.41953 -15.39666 -14.60551 -14.53764 -14.28603 -13.97227 -13.72260 -13.37565 -13.14348 -12.87279 -12.70622 -12.37549 -12.15410 -11.99373 -11.84136 -11.69638 -11.60474 -11.47057 -11.17497 -11.05235 -10.96552 -10.64826 -10.63617 -10.40229 -10.21697 -10.17432 -9.26000 -8.93461 -8.76280 -7.74789 -7.46090 -6.27849 -4.73175 0.73204 0.80657 2.40995 2.82313 3.08436 3.14244 3.16742 3.20950 3.68232 3.97772 4.22055 4.25347 4.36425 4.45943 4.57094 4.60835 4.72508 4.86995 4.99723 5.05857 5.18884 5.26723 5.30795 5.44362 5.58307 5.61685 5.66327 5.68104 5.71620 5.79272 5.86861 5.99848 6.14628 6.18493 6.33386 6.43095 6.54982 6.60996 7.05600 7.36679 7.93112 7.98597 8.29356 8.94039 9.36616 10.47858 10.66741 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.003552 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.663151 B = 7882.064248 C = 8854.833779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.474 3.526 4 O -0.500 6.500 5 C -0.092 4.092 6 H 0.116 0.884 7 C 0.125 3.875 8 N -0.644 5.644 9 C 0.576 3.424 10 O -0.570 6.570 11 C -0.538 4.538 12 H 0.071 0.929 13 C 0.087 3.913 14 N -0.765 5.765 15 Si 0.908 3.092 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.276 1.276 19 C 0.121 3.879 20 C -0.064 4.064 21 H 0.115 0.885 22 C -0.110 4.110 23 C -0.056 4.056 24 C -0.160 4.160 25 C 0.122 3.878 26 F -0.135 7.135 27 C -0.192 4.192 28 C 0.138 3.862 29 F -0.124 7.124 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.269 0.731 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -3.964 -18.445 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.273 6.273 3 C 0.316 3.684 4 O -0.386 6.386 5 C -0.112 4.112 6 H 0.134 0.866 7 C 0.000 4.000 8 N -0.383 5.383 9 C 0.384 3.616 10 O -0.451 6.451 11 C -0.574 4.574 12 H 0.089 0.911 13 C -0.134 4.134 14 N -0.394 5.394 15 Si 0.733 3.267 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.201 1.201 19 C -0.004 4.004 20 C -0.084 4.084 21 H 0.133 0.867 22 C -0.112 4.112 23 C -0.074 4.074 24 C -0.179 4.179 25 C 0.103 3.897 26 F -0.113 7.113 27 C -0.212 4.212 28 C 0.119 3.881 29 F -0.102 7.102 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.166 0.834 39 H 0.161 0.839 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.975 -2.926 -17.787 18.134 hybrid contribution -0.658 -0.454 0.055 0.802 sum 1.317 -3.380 -17.732 18.100 Atomic orbital electron populations 1.23243 0.76520 1.03465 1.02532 1.86473 1.23282 1.33293 1.84249 1.23397 0.91778 0.81350 0.71846 1.90644 1.66816 1.36297 1.44872 1.22172 0.88124 0.98151 1.02755 0.86569 1.21979 1.00221 0.91044 0.86794 1.49424 1.71120 1.10056 1.07745 1.18078 0.77497 0.89540 0.76523 1.90633 1.57182 1.32557 1.64747 1.20876 1.46257 0.97148 0.93129 0.91093 1.25729 0.93487 0.96453 0.97682 1.70022 1.35101 1.25206 1.09051 0.86296 0.78878 0.81844 0.79700 1.18625 1.20030 1.20115 1.22047 0.95723 0.95211 0.87395 1.21241 0.98979 0.95664 0.92475 0.86688 1.19942 0.97481 0.96995 0.96772 1.20877 0.91898 0.98308 0.96296 1.21193 1.02293 0.99251 0.95174 1.17293 0.89780 0.97007 0.85654 1.91521 1.73032 1.93520 1.53241 1.20989 0.95753 1.04245 1.00217 1.17178 0.83896 0.92334 0.94720 1.91561 1.47646 1.76198 1.94792 0.92251 0.88231 0.91625 0.89136 0.91228 0.91981 0.92445 0.90149 0.83360 0.83894 0.83536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.36 -5.26 10.42 -39.26 -0.41 -5.67 16 3 C 0.47 7.88 7.16 36.00 0.26 8.14 16 4 O -0.50 -9.74 15.01 -18.75 -0.28 -10.03 16 5 C -0.09 -1.32 2.99 -90.37 -0.27 -1.59 16 6 H 0.12 1.25 7.32 -51.93 -0.38 0.87 16 7 C 0.13 2.07 6.41 -2.41 -0.02 2.05 16 8 N -0.64 -14.06 3.32 -170.79 -0.57 -14.62 16 9 C 0.58 16.17 7.84 -12.99 -0.10 16.07 16 10 O -0.57 -18.40 15.29 5.20 0.08 -18.32 16 11 C -0.54 -14.77 9.07 -35.63 -0.32 -15.09 16 12 H 0.07 1.78 6.50 -52.49 -0.34 1.44 16 13 C 0.09 2.37 5.50 -17.37 -0.10 2.27 16 14 N -0.77 -22.62 11.83 55.55 0.66 -21.96 16 15 Si 0.91 19.66 29.56 -169.99 -5.02 14.64 16 16 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 19 C 0.12 2.20 6.51 -2.29 -0.01 2.19 16 20 C -0.06 -0.99 2.85 -90.35 -0.26 -1.24 16 21 H 0.12 2.08 5.51 -51.93 -0.29 1.79 16 22 C -0.11 -1.37 4.75 -104.55 -0.50 -1.87 16 23 C -0.06 -0.55 8.11 -39.60 -0.32 -0.87 16 24 C -0.16 -1.43 10.03 -39.50 -0.40 -1.83 16 25 C 0.12 1.23 7.30 -39.43 -0.29 0.94 16 26 F -0.13 -1.39 17.27 2.25 0.04 -1.35 16 27 C -0.19 -2.04 10.01 -39.45 -0.39 -2.43 16 28 C 0.14 1.73 7.25 -39.43 -0.29 1.45 16 29 F -0.12 -1.79 16.22 2.25 0.04 -1.75 16 30 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 33 H 0.09 1.60 6.29 -51.93 -0.33 1.28 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 36 H 0.06 0.91 6.89 -51.93 -0.36 0.55 16 37 H 0.08 1.67 7.89 -51.93 -0.41 1.26 16 38 H 0.15 1.25 7.74 -52.49 -0.41 0.84 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -35.82 351.65 -6.28 -42.10 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.18 Total: 1.97 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -1.94 Total: 9.68 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.09 Total: -36.58 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.61 Total: -34.01 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.10 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.82 -6.28 -42.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425024742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.408 kcal (2) G-P(sol) polarization free energy of solvation -35.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds