Wall clock time and date at job start Tue Mar 31 2020 22:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 117.00020 * 2 1 4 4 O 1.20829 * 119.99841 * 359.97438 * 3 2 1 5 5 C 1.50692 * 119.99898 * 180.02562 * 3 2 1 6 6 H 1.09001 * 110.30932 * 57.82218 * 5 3 2 7 7 C 1.54393 * 110.34322 * 295.53267 * 5 3 2 8 8 N 1.48146 * 104.61829 * 264.99938 * 7 5 3 9 9 C 1.34777 * 127.83681 * 140.41123 * 8 7 5 10 10 O 1.21688 * 119.99949 * 180.02562 * 9 8 7 11 11 C 1.46373 * 120.00217 * 0.02647 * 9 8 7 12 12 H 1.07998 * 120.00066 * 359.97438 * 11 9 8 13 13 C 1.40044 * 120.00288 * 180.02562 * 11 9 8 14 14 N 1.30674 * 119.99847 * 359.97438 * 13 11 9 15 15 Si 1.86792 * 120.00461 * 179.97438 * 13 11 9 16 16 H 1.48511 * 109.46997 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47351 * 119.99649 * 15 13 11 18 18 H 1.48495 * 109.47411 * 240.00221 * 15 13 11 19 19 C 1.48314 * 104.39041 * 320.47054 * 8 7 5 20 20 C 1.54284 * 110.34307 * 179.97438 * 5 3 2 21 21 H 1.08999 * 110.34382 * 359.89588 * 20 5 3 22 22 C 1.50696 * 110.34418 * 237.74022 * 20 5 3 23 23 C 1.38230 * 119.98825 * 301.45199 * 22 20 5 24 24 C 1.38186 * 120.05312 * 179.97438 * 23 22 20 25 25 C 1.38503 * 120.02165 * 0.03870 * 24 23 22 26 26 F 1.35096 * 120.00694 * 180.02562 * 25 24 23 27 27 C 1.38390 * 119.97648 * 359.97438 * 25 24 23 28 28 C 1.38445 * 119.95081 * 359.97438 * 27 25 24 29 29 F 1.35101 * 120.01390 * 179.72859 * 28 27 25 30 30 H 1.09004 * 109.47054 * 59.99998 * 1 2 3 31 31 H 1.09003 * 109.47120 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47001 * 300.00150 * 1 2 3 33 33 H 1.09007 * 110.40422 * 23.78334 * 7 5 3 34 34 H 1.08995 * 110.40737 * 146.20866 * 7 5 3 35 35 H 0.97003 * 120.00388 * 180.02562 * 14 13 11 36 36 H 1.09003 * 110.38325 * 280.73542 * 19 8 7 37 37 H 1.09002 * 110.50513 * 158.25342 * 19 8 7 38 38 H 1.08000 * 119.97299 * 359.97438 * 23 22 20 39 39 H 1.07994 * 119.99243 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.02409 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9722 0.7512 -0.8661 7 6 4.1354 0.6795 1.3053 8 7 4.3221 1.8469 2.1981 9 6 4.0817 1.9219 3.5222 10 8 4.2869 2.9618 4.1199 11 6 3.5739 0.7525 4.2412 12 1 3.3914 -0.1704 3.7107 13 6 3.3235 0.8305 5.6169 14 7 3.5439 1.9472 6.2587 15 14 2.6748 -0.6616 6.5344 16 1 2.5116 -1.7932 5.5866 17 1 3.6357 -1.0439 7.6000 18 1 1.3618 -0.3343 7.1460 19 6 4.8322 2.9158 1.3055 20 6 4.0262 2.7475 -0.0011 21 1 3.1637 3.4139 -0.0028 22 6 4.9018 3.0225 -1.1964 23 6 6.0639 2.2975 -1.3829 24 6 6.8675 2.5482 -2.4788 25 6 6.5098 3.5269 -3.3911 26 9 7.2954 3.7714 -4.4626 27 6 5.3468 4.2536 -3.2052 28 6 4.5418 4.0008 -2.1075 29 9 3.4090 4.7132 -1.9218 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.4270 -0.0240 1.7427 34 1 5.0904 0.1898 1.1152 35 1 3.3709 2.0013 7.2117 36 1 5.8966 2.7764 1.1159 37 1 4.6484 3.8977 1.7417 38 1 6.3439 1.5345 -0.6717 39 1 7.7750 1.9809 -2.6238 40 1 5.0669 5.0167 -3.9163 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425024742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:32 Heat of formation + Delta-G solvation = -200.724450 kcal Electronic energy + Delta-G solvation = -29796.614377 eV Core-core repulsion = 25211.787165 eV Total energy + Delta-G solvation = -4584.827212 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.07501 -49.99180 -42.01041 -40.49170 -39.39371 -37.88828 -37.25446 -34.67555 -33.52963 -31.82341 -31.55613 -29.71821 -28.43605 -28.00199 -25.37130 -24.57050 -24.00354 -22.55656 -21.31698 -20.70972 -19.36744 -18.84585 -18.69204 -18.16323 -17.83559 -17.74486 -17.29636 -16.98692 -16.80417 -16.61590 -16.32897 -16.05698 -15.67487 -15.57676 -15.42550 -14.88422 -14.57331 -14.54082 -14.22385 -13.81802 -13.68127 -13.47385 -13.44329 -13.23265 -13.00045 -12.86317 -12.77115 -12.63629 -12.59258 -12.41141 -12.06596 -11.97507 -11.91952 -11.81354 -11.52654 -10.96635 -10.08175 -9.92815 -9.65687 -9.24433 -8.31809 -6.86977 -0.12835 0.00374 1.11105 1.39875 1.40074 1.58310 1.68478 2.21225 2.29930 2.43921 2.69552 2.84875 3.25660 3.41205 3.44661 3.47655 3.63120 3.74375 3.90278 3.95353 4.11566 4.13939 4.28729 4.31673 4.34890 4.40520 4.67686 4.69297 4.76677 4.81146 4.87908 4.88532 4.95170 4.99326 5.07649 5.26466 5.32687 5.36677 5.48545 5.75174 5.98085 6.34243 6.67183 6.85194 7.43477 8.42134 8.64699 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.003552 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.663151 B = 7882.064248 C = 8854.833779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.467 3.533 4 O -0.540 6.540 5 C -0.081 4.081 6 H 0.167 0.833 7 C 0.123 3.877 8 N -0.655 5.655 9 C 0.558 3.442 10 O -0.632 6.632 11 C -0.560 4.560 12 H 0.093 0.907 13 C 0.027 3.973 14 N -0.823 5.823 15 Si 0.996 3.004 16 H -0.241 1.241 17 H -0.266 1.266 18 H -0.273 1.273 19 C 0.121 3.879 20 C -0.050 4.050 21 H 0.080 0.920 22 C -0.120 4.120 23 C -0.048 4.048 24 C -0.142 4.142 25 C 0.122 3.878 26 F -0.134 7.134 27 C -0.190 4.190 28 C 0.115 3.885 29 F -0.145 7.145 30 H 0.066 0.934 31 H 0.139 0.861 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.274 0.726 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.173 0.827 39 H 0.176 0.824 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 -7.530 -20.466 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.311 3.689 4 O -0.429 6.429 5 C -0.101 4.101 6 H 0.184 0.816 7 C 0.000 4.000 8 N -0.393 5.393 9 C 0.366 3.634 10 O -0.519 6.519 11 C -0.596 4.596 12 H 0.111 0.889 13 C -0.188 4.188 14 N -0.452 5.452 15 Si 0.815 3.185 16 H -0.163 1.163 17 H -0.191 1.191 18 H -0.198 1.198 19 C -0.003 4.003 20 C -0.069 4.069 21 H 0.098 0.902 22 C -0.121 4.121 23 C -0.065 4.065 24 C -0.160 4.160 25 C 0.102 3.898 26 F -0.113 7.113 27 C -0.209 4.209 28 C 0.096 3.904 29 F -0.123 7.123 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.191 0.809 39 H 0.194 0.806 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.295 -6.536 -19.896 21.200 hybrid contribution -1.050 0.702 0.545 1.375 sum 2.246 -5.835 -19.351 20.336 Atomic orbital electron populations 1.23544 0.75039 1.05871 1.02018 1.86465 1.24776 1.32098 1.83620 1.23935 0.92801 0.81311 0.70827 1.90641 1.67851 1.37681 1.46743 1.22256 0.86744 0.97609 1.03482 0.81615 1.22305 1.02444 0.89115 0.86182 1.49108 1.70117 1.13032 1.07025 1.18418 0.77334 0.89078 0.78576 1.90574 1.59620 1.34443 1.67222 1.21389 1.46331 0.97827 0.94049 0.88949 1.27024 0.93048 1.00078 0.98663 1.70207 1.36838 1.28465 1.09714 0.84991 0.77946 0.77327 0.78222 1.16316 1.19088 1.19847 1.22191 0.97897 0.92382 0.87840 1.20874 0.97895 0.95858 0.92320 0.90216 1.19736 0.98362 0.98288 0.95733 1.21090 0.90495 0.98056 0.96893 1.21503 1.02676 0.98183 0.93678 1.17423 0.89397 0.97098 0.85849 1.91531 1.72895 1.93542 1.53312 1.21078 0.95696 1.04510 0.99662 1.17427 0.84020 0.92986 0.95999 1.91510 1.48917 1.76845 1.95048 0.91509 0.84331 0.93516 0.90260 0.86549 0.91584 0.89179 0.94295 0.80934 0.80647 0.82446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.84 16 2 O -0.35 -9.88 10.42 -51.42 -0.54 -10.41 16 3 C 0.47 15.31 7.16 71.23 0.51 15.82 16 4 O -0.54 -21.81 15.01 21.95 0.33 -21.48 16 5 C -0.08 -2.18 2.99 -10.63 -0.03 -2.21 16 6 H 0.17 2.81 7.32 -2.39 -0.02 2.79 16 7 C 0.12 3.79 6.41 86.54 0.55 4.35 16 8 N -0.66 -28.93 3.32 -812.47 -2.70 -31.63 16 9 C 0.56 32.54 7.84 86.36 0.68 33.22 16 10 O -0.63 -43.32 15.29 -4.31 -0.07 -43.38 16 11 C -0.56 -31.16 9.07 24.83 0.23 -30.94 16 12 H 0.09 4.55 6.50 -2.91 -0.02 4.53 16 13 C 0.03 1.48 5.50 85.30 0.47 1.95 16 14 N -0.82 -50.57 11.83 21.83 0.26 -50.31 16 15 Si 1.00 40.21 29.56 68.60 2.03 42.24 16 16 H -0.24 -8.75 7.11 99.48 0.71 -8.04 16 17 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 19 C 0.12 4.48 6.51 86.52 0.56 5.04 16 20 C -0.05 -1.53 2.85 -10.62 -0.03 -1.56 16 21 H 0.08 3.06 5.51 -2.39 -0.01 3.05 16 22 C -0.12 -2.77 4.75 -19.82 -0.09 -2.86 16 23 C -0.05 -0.74 8.11 22.26 0.18 -0.56 16 24 C -0.14 -1.88 10.03 22.32 0.22 -1.66 16 25 C 0.12 2.06 7.30 22.37 0.16 2.22 16 26 F -0.13 -2.35 17.27 44.97 0.78 -1.57 16 27 C -0.19 -3.71 10.01 22.36 0.22 -3.49 16 28 C 0.12 2.83 7.25 22.37 0.16 2.99 16 29 F -0.14 -4.39 16.22 44.97 0.73 -3.66 16 30 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.23 8.13 -2.38 -0.02 1.21 16 33 H 0.08 2.65 6.29 -2.38 -0.01 2.63 16 34 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 36 H 0.09 2.73 6.89 -2.39 -0.02 2.71 16 37 H 0.04 1.74 7.89 -2.39 -0.02 1.72 16 38 H 0.17 1.89 7.74 -2.91 -0.02 1.86 16 39 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 40 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -85.97 351.65 6.92 -79.05 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 1.11 Total: 17.01 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: 4.99 Total: 24.16 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -2.44 Total: -81.94 kcal Atomic # 8 Polarization: -75.01 SS G_CDS: -0.27 Total: -75.28 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 1.51 Total: -5.24 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -85.97 6.92 -79.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425024742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.675 kcal (2) G-P(sol) polarization free energy of solvation -85.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds