Wall clock time and date at job start Tue Mar 31 2020 22:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34768 * 119.99926 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00231 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00145 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00179 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.85748 * 37.33744 * 14 13 11 16 16 C 1.54627 * 110.97034 * 273.55011 * 14 13 11 17 17 C 1.51286 * 104.19411 * 266.67735 * 16 14 13 18 18 O 1.21295 * 124.94297 * 163.71364 * 17 16 14 19 19 N 1.34420 * 110.11625 * 343.74955 * 17 16 14 20 20 C 1.40171 * 124.35345 * 179.57144 * 19 17 16 21 21 C 1.38982 * 120.08512 * 269.74971 * 20 19 17 22 22 F 1.35102 * 120.04188 * 359.97438 * 21 20 19 23 23 C 1.38344 * 119.91339 * 179.71842 * 21 20 19 24 24 C 1.38259 * 120.08262 * 0.57438 * 23 21 20 25 25 C 1.38267 * 120.17747 * 359.68121 * 24 23 21 26 26 C 1.38350 * 120.08078 * 0.03951 * 25 24 23 27 27 F 1.35102 * 120.04017 * 179.97438 * 26 25 24 28 28 C 1.46771 * 111.29898 * 359.58792 * 19 17 16 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 0.96997 * 119.99786 * 359.97438 * 10 9 7 33 33 H 0.96997 * 119.99567 * 0.02562 * 13 11 10 34 34 H 1.08994 * 110.49083 * 25.35358 * 16 14 13 35 35 H 1.09002 * 110.49043 * 147.87129 * 16 14 13 36 36 H 1.07998 * 119.95567 * 180.27887 * 23 21 20 37 37 H 1.08008 * 119.91721 * 179.69941 * 24 23 21 38 38 H 1.07997 * 119.96305 * 180.02562 * 25 24 23 39 39 H 1.09002 * 110.24916 * 258.01778 * 28 19 17 40 40 H 1.09002 * 110.24152 * 136.01615 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 1.7538 -4.8833 -0.0125 12 8 0.5585 -5.1055 -0.0076 13 7 2.6297 -5.9078 -0.0186 14 6 2.1414 -7.2889 -0.0187 15 1 1.2455 -7.3838 -0.6323 16 6 1.8796 -7.7835 1.4228 17 6 3.1702 -8.4648 1.8214 18 8 3.4867 -8.7422 2.9590 19 7 3.9154 -8.7173 0.7315 20 6 5.1741 -9.3335 0.7594 21 6 6.3246 -8.5628 0.8774 22 9 6.2318 -7.2179 0.9649 23 6 7.5648 -9.1751 0.9104 24 6 7.6611 -10.5510 0.8142 25 6 6.5192 -11.3208 0.6914 26 6 5.2750 -10.7163 0.6635 27 9 4.1598 -11.4692 0.5429 28 6 3.2420 -8.2644 -0.4914 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 3.1567 -3.4354 -0.0154 33 1 3.5833 -5.7305 -0.0221 34 1 1.6729 -6.9415 2.0834 35 1 1.0513 -8.4919 1.4386 36 1 8.4590 -8.5772 1.0066 37 1 8.6310 -11.0259 0.8354 38 1 6.5984 -12.3953 0.6170 39 1 2.7966 -9.1118 -1.0127 40 1 3.9484 -7.7492 -1.1423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426429994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:53 Heat of formation + Delta-G solvation = -118.235875 kcal Electronic energy + Delta-G solvation = -29020.466420 eV Core-core repulsion = 24471.508932 eV Total energy + Delta-G solvation = -4548.957488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.46250 -49.40929 -41.18302 -39.40587 -38.86067 -36.87335 -34.78782 -34.20028 -32.62695 -31.68074 -30.89565 -29.19588 -27.90573 -26.45226 -23.87802 -23.44935 -22.96732 -21.75915 -20.66222 -20.23130 -18.66922 -18.35232 -17.87382 -17.84314 -17.09629 -16.61556 -16.36087 -16.11293 -15.73347 -15.71720 -15.42693 -15.10354 -14.86874 -14.84572 -14.20009 -14.00951 -13.79416 -13.69809 -13.37000 -13.25122 -12.97601 -12.56220 -12.52885 -12.36369 -12.23575 -12.01321 -11.93508 -11.81434 -11.01205 -10.78825 -10.35636 -10.16041 -9.70078 -9.45596 -9.42542 -9.31592 -9.02221 -8.79897 -8.67441 -7.95819 -6.51417 -4.24800 0.29611 0.40547 2.23585 2.34532 2.73305 3.05812 3.26690 3.38165 3.39842 3.58910 3.67633 3.85231 4.02138 4.14413 4.26412 4.30421 4.43617 4.53679 4.55444 4.74369 4.83213 4.98455 5.11535 5.20245 5.27613 5.28985 5.31159 5.42307 5.57204 5.59455 5.74261 5.87709 6.33459 6.56006 6.59583 6.82883 7.24214 7.27284 7.40318 7.80284 7.81440 8.28077 8.59829 8.76201 9.15883 9.48983 10.88887 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018905 B = 0.002515 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.763251 B =11132.101025 C =12095.816958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 1.076 2.924 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.623 4.623 8 H 0.056 0.944 9 C 0.258 3.742 10 N -0.722 5.722 11 C 0.696 3.304 12 O -0.598 6.598 13 N -0.749 5.749 14 C 0.162 3.838 15 H 0.122 0.878 16 C -0.164 4.164 17 C 0.528 3.472 18 O -0.515 6.515 19 N -0.582 5.582 20 C 0.074 3.926 21 C 0.139 3.861 22 F -0.120 7.120 23 C -0.159 4.159 24 C -0.055 4.055 25 C -0.161 4.161 26 C 0.138 3.862 27 F -0.122 7.122 28 C 0.099 3.901 29 H 0.273 0.727 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.389 0.611 33 H 0.395 0.605 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.095 0.905 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.764 -24.887 -2.190 30.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.183 4.183 3 Si 0.903 3.097 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.661 4.661 8 H 0.075 0.925 9 C 0.136 3.864 10 N -0.373 5.373 11 C 0.396 3.604 12 O -0.477 6.477 13 N -0.407 5.407 14 C 0.055 3.945 15 H 0.140 0.860 16 C -0.205 4.205 17 C 0.318 3.682 18 O -0.389 6.389 19 N -0.315 5.315 20 C -0.018 4.018 21 C 0.118 3.882 22 F -0.098 7.098 23 C -0.179 4.179 24 C -0.073 4.073 25 C -0.180 4.180 26 C 0.117 3.883 27 F -0.101 7.101 28 C -0.023 4.023 29 H 0.083 0.917 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.222 0.778 33 H 0.229 0.771 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.113 0.887 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.540 -23.506 -1.566 28.222 hybrid contribution 0.971 -1.466 -0.012 1.759 sum 16.511 -24.972 -1.578 29.979 Atomic orbital electron populations 1.70758 1.06852 1.31081 1.44931 1.25865 0.96424 1.02682 0.93334 0.83449 0.74806 0.74892 0.76557 1.20551 1.21304 1.21306 1.22057 0.94566 0.91485 1.58008 0.92539 1.19060 0.88434 0.82526 0.96388 1.45536 1.10864 1.04079 1.76852 1.16104 0.85129 0.81010 0.78191 1.90880 1.14025 1.84188 1.58594 1.45182 1.09126 1.04198 1.82151 1.21481 0.97058 0.80474 0.95522 0.86025 1.22868 0.95528 1.02783 0.99347 1.21257 0.85887 0.77211 0.83835 1.90741 1.74988 1.52947 1.20213 1.45530 1.15764 1.60836 1.09336 1.17320 0.84988 0.89833 1.09689 1.17739 0.93063 0.77676 0.99721 1.91570 1.96949 1.28354 1.92921 1.21232 0.96319 0.95941 1.04360 1.20959 0.98854 0.92364 0.95115 1.21201 0.90246 1.01887 1.04659 1.17702 0.83364 0.87215 1.00016 1.91546 1.50546 1.75219 1.92752 1.22605 0.95285 0.98273 0.86136 0.91663 0.96663 0.96624 0.77794 0.77139 0.86708 0.86318 0.83286 0.83344 0.83393 0.88729 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.65 55.43 0.76 -26.53 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.44 29.90 -169.99 -5.08 19.36 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.29 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.62 -17.12 9.28 -34.44 -0.32 -17.44 16 8 H 0.06 1.47 7.60 -52.49 -0.40 1.08 16 9 C 0.26 6.79 4.74 -5.19 -0.02 6.76 16 10 N -0.72 -15.21 5.55 -66.41 -0.37 -15.58 16 11 C 0.70 13.57 8.56 -86.92 -0.74 12.82 16 12 O -0.60 -13.87 16.09 5.29 0.09 -13.79 16 13 N -0.75 -10.38 5.16 -57.09 -0.29 -10.68 16 14 C 0.16 1.83 3.43 -66.30 -0.23 1.60 16 15 H 0.12 1.37 7.72 -51.93 -0.40 0.97 16 16 C -0.16 -2.00 6.58 -26.74 -0.18 -2.18 16 17 C 0.53 7.34 7.99 -10.86 -0.09 7.25 16 18 O -0.52 -9.13 17.71 5.54 0.10 -9.03 16 19 N -0.58 -6.52 2.62 -112.12 -0.29 -6.81 16 20 C 0.07 0.78 5.40 -83.49 -0.45 0.33 16 21 C 0.14 1.35 7.31 -39.27 -0.29 1.07 16 22 F -0.12 -1.36 17.08 2.25 0.04 -1.32 16 23 C -0.16 -1.03 10.02 -39.53 -0.40 -1.43 16 24 C -0.05 -0.26 10.04 -39.56 -0.40 -0.66 16 25 C -0.16 -0.97 10.02 -39.53 -0.40 -1.37 16 26 C 0.14 1.27 7.31 -39.27 -0.29 0.98 16 27 F -0.12 -1.26 17.08 2.25 0.04 -1.22 16 28 C 0.10 0.86 6.90 -3.12 -0.02 0.83 16 29 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 30 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 31 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 32 H 0.39 7.20 8.34 -40.82 -0.34 6.86 16 33 H 0.39 4.74 8.59 -40.82 -0.35 4.39 16 34 H 0.11 1.67 8.09 -51.93 -0.42 1.25 16 35 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.15 0.22 8.06 -52.48 -0.42 -0.21 16 38 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.69 8.04 -51.93 -0.42 0.27 16 LS Contribution 361.25 15.07 5.44 5.44 Total: -1.00 -36.71 361.25 -7.86 -44.56 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.36 Total: 6.48 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -3.91 Total: 9.12 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.20 Total: -59.61 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.18 Total: -22.81 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.08 Total: -2.54 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.71 -7.86 -44.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426429994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.672 kcal (2) G-P(sol) polarization free energy of solvation -36.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds