Wall clock time and date at job start Tue Mar 31 2020 22:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34768 * 119.99926 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00231 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00145 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00179 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.85748 * 37.33744 * 14 13 11 16 16 C 1.54627 * 110.97034 * 273.55011 * 14 13 11 17 17 C 1.51286 * 104.19411 * 266.67735 * 16 14 13 18 18 O 1.21295 * 124.94297 * 163.71364 * 17 16 14 19 19 N 1.34420 * 110.11625 * 343.74955 * 17 16 14 20 20 C 1.40171 * 124.35345 * 179.57144 * 19 17 16 21 21 C 1.38982 * 120.08512 * 269.74971 * 20 19 17 22 22 F 1.35102 * 120.04188 * 359.97438 * 21 20 19 23 23 C 1.38344 * 119.91339 * 179.71842 * 21 20 19 24 24 C 1.38259 * 120.08262 * 0.57438 * 23 21 20 25 25 C 1.38267 * 120.17747 * 359.68121 * 24 23 21 26 26 C 1.38350 * 120.08078 * 0.03951 * 25 24 23 27 27 F 1.35102 * 120.04017 * 179.97438 * 26 25 24 28 28 C 1.46771 * 111.29898 * 359.58792 * 19 17 16 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 0.96997 * 119.99786 * 359.97438 * 10 9 7 33 33 H 0.96997 * 119.99567 * 0.02562 * 13 11 10 34 34 H 1.08994 * 110.49083 * 25.35358 * 16 14 13 35 35 H 1.09002 * 110.49043 * 147.87129 * 16 14 13 36 36 H 1.07998 * 119.95567 * 180.27887 * 23 21 20 37 37 H 1.08008 * 119.91721 * 179.69941 * 24 23 21 38 38 H 1.07997 * 119.96305 * 180.02562 * 25 24 23 39 39 H 1.09002 * 110.24916 * 258.01778 * 28 19 17 40 40 H 1.09002 * 110.24152 * 136.01615 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 1.7538 -4.8833 -0.0125 12 8 0.5585 -5.1055 -0.0076 13 7 2.6297 -5.9078 -0.0186 14 6 2.1414 -7.2889 -0.0187 15 1 1.2455 -7.3838 -0.6323 16 6 1.8796 -7.7835 1.4228 17 6 3.1702 -8.4648 1.8214 18 8 3.4867 -8.7422 2.9590 19 7 3.9154 -8.7173 0.7315 20 6 5.1741 -9.3335 0.7594 21 6 6.3246 -8.5628 0.8774 22 9 6.2318 -7.2179 0.9649 23 6 7.5648 -9.1751 0.9104 24 6 7.6611 -10.5510 0.8142 25 6 6.5192 -11.3208 0.6914 26 6 5.2750 -10.7163 0.6635 27 9 4.1598 -11.4692 0.5429 28 6 3.2420 -8.2644 -0.4914 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 3.1567 -3.4354 -0.0154 33 1 3.5833 -5.7305 -0.0221 34 1 1.6729 -6.9415 2.0834 35 1 1.0513 -8.4919 1.4386 36 1 8.4590 -8.5772 1.0066 37 1 8.6310 -11.0259 0.8354 38 1 6.5984 -12.3953 0.6170 39 1 2.7966 -9.1118 -1.0127 40 1 3.9484 -7.7492 -1.1423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426429994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:52 Heat of formation + Delta-G solvation = -144.880442 kcal Electronic energy + Delta-G solvation = -29021.621815 eV Core-core repulsion = 24471.508932 eV Total energy + Delta-G solvation = -4550.112883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.16375 -50.13382 -42.18889 -40.81183 -39.61695 -38.04167 -36.47545 -35.58013 -34.50411 -32.85222 -31.43711 -30.04956 -29.07028 -28.22571 -25.02944 -24.47794 -24.03471 -23.00856 -21.97125 -21.29381 -20.03594 -19.36562 -18.80011 -18.63379 -18.57148 -17.99589 -17.15842 -16.79423 -16.65777 -16.51343 -16.45813 -16.28356 -16.23806 -15.65901 -15.56876 -15.43052 -15.16993 -15.00194 -14.60785 -14.41868 -14.24255 -13.87261 -13.80061 -13.16478 -13.10319 -13.07857 -13.06591 -12.88340 -12.68997 -12.54062 -11.91395 -11.45285 -11.42353 -10.92418 -10.76350 -10.45957 -10.31694 -10.06447 -9.88866 -9.78879 -8.78669 -6.53764 -0.28447 -0.15082 1.17496 1.51653 1.55668 1.64688 1.67561 1.84023 2.08765 2.21544 2.55710 2.65358 3.08298 3.09261 3.28611 3.31332 3.32992 3.57730 3.71220 3.72618 4.01466 4.10967 4.22124 4.36179 4.44424 4.57323 4.65677 4.68978 4.79075 4.88680 4.95814 4.99755 5.10979 5.23834 5.36339 5.44873 5.49448 5.58956 5.70509 5.98758 6.12374 6.36618 6.79108 7.08984 7.30067 7.56988 8.61071 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018905 B = 0.002515 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.763251 B =11132.101025 C =12095.816958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.032 4.032 3 Si 1.129 2.871 4 H -0.286 1.286 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.630 4.630 8 H 0.074 0.926 9 C 0.273 3.727 10 N -0.721 5.721 11 C 0.698 3.302 12 O -0.636 6.636 13 N -0.727 5.727 14 C 0.160 3.840 15 H 0.128 0.872 16 C -0.160 4.160 17 C 0.523 3.477 18 O -0.564 6.564 19 N -0.574 5.574 20 C 0.043 3.957 21 C 0.111 3.889 22 F -0.137 7.137 23 C -0.152 4.152 24 C -0.038 4.038 25 C -0.149 4.149 26 C 0.116 3.884 27 F -0.135 7.135 28 C 0.107 3.893 29 H 0.255 0.745 30 H -0.018 1.018 31 H -0.013 1.013 32 H 0.404 0.596 33 H 0.407 0.593 34 H 0.088 0.912 35 H 0.140 0.860 36 H 0.172 0.828 37 H 0.193 0.807 38 H 0.176 0.824 39 H 0.125 0.875 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.360 -26.287 -3.233 33.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.230 4.230 3 Si 0.948 3.052 4 H -0.211 1.211 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.667 4.667 8 H 0.092 0.908 9 C 0.149 3.851 10 N -0.374 5.374 11 C 0.398 3.602 12 O -0.518 6.518 13 N -0.384 5.384 14 C 0.054 3.946 15 H 0.146 0.854 16 C -0.202 4.202 17 C 0.314 3.686 18 O -0.442 6.442 19 N -0.305 5.305 20 C -0.049 4.049 21 C 0.090 3.910 22 F -0.116 7.116 23 C -0.171 4.171 24 C -0.055 4.055 25 C -0.168 4.168 26 C 0.095 3.905 27 F -0.113 7.113 28 C -0.014 4.014 29 H 0.064 0.936 30 H -0.001 1.001 31 H 0.005 0.995 32 H 0.239 0.761 33 H 0.243 0.757 34 H 0.107 0.893 35 H 0.158 0.842 36 H 0.190 0.810 37 H 0.210 0.790 38 H 0.193 0.807 39 H 0.143 0.857 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 19.213 -24.984 -2.654 31.629 hybrid contribution -0.062 -1.203 0.306 1.243 sum 19.151 -26.187 -2.348 32.528 Atomic orbital electron populations 1.70899 1.08204 1.30016 1.47375 1.27603 0.96369 1.07022 0.92033 0.82799 0.73936 0.70132 0.78306 1.21127 1.19138 1.18741 1.22415 0.95510 0.91792 1.57009 0.90826 1.18540 0.88694 0.84385 0.93448 1.45172 1.10775 1.03800 1.77627 1.16184 0.85122 0.81306 0.77631 1.90854 1.16056 1.84754 1.60139 1.44984 1.09006 1.04094 1.80274 1.21710 0.98519 0.79203 0.95194 0.85412 1.22832 0.95895 1.02306 0.99156 1.21445 0.86440 0.76961 0.83771 1.90700 1.76110 1.55245 1.22130 1.45512 1.16029 1.59827 1.09140 1.17628 0.84645 0.90729 1.11887 1.18094 0.94168 0.77101 1.01658 1.91517 1.97107 1.29618 1.93354 1.21618 0.95724 0.97055 1.02676 1.21489 1.00233 0.91448 0.92341 1.21623 0.89205 1.03439 1.02570 1.18000 0.84214 0.86769 1.01491 1.91511 1.51407 1.75337 1.93056 1.22741 0.94683 0.98573 0.85422 0.93576 1.00061 0.99547 0.76087 0.75675 0.89331 0.84185 0.81049 0.79001 0.80651 0.85682 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.76 13.65 21.45 0.29 -57.47 16 2 C -0.03 -1.79 5.46 84.65 0.46 -1.33 16 3 Si 1.13 48.25 29.90 68.60 2.05 50.30 16 4 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.63 -34.79 9.28 25.60 0.24 -34.56 16 8 H 0.07 3.74 7.60 -2.91 -0.02 3.72 16 9 C 0.27 14.94 4.74 85.64 0.41 15.34 16 10 N -0.72 -30.85 5.55 -482.30 -2.68 -33.53 16 11 C 0.70 27.67 8.56 179.06 1.53 29.20 16 12 O -0.64 -30.48 16.09 -3.98 -0.06 -30.55 16 13 N -0.73 -19.89 5.16 -452.78 -2.34 -22.22 16 14 C 0.16 3.50 3.43 46.05 0.16 3.66 16 15 H 0.13 2.76 7.72 -2.39 -0.02 2.74 16 16 C -0.16 -4.01 6.58 30.59 0.20 -3.81 16 17 C 0.52 14.85 7.99 87.90 0.70 15.55 16 18 O -0.56 -20.84 17.71 -3.08 -0.05 -20.90 16 19 N -0.57 -12.56 2.62 -627.22 -1.64 -14.20 16 20 C 0.04 0.87 5.40 38.16 0.21 1.08 16 21 C 0.11 2.02 7.31 22.47 0.16 2.18 16 22 F -0.14 -3.07 17.08 44.97 0.77 -2.30 16 23 C -0.15 -1.52 10.02 22.30 0.22 -1.30 16 24 C -0.04 -0.20 10.04 22.28 0.22 0.03 16 25 C -0.15 -1.31 10.02 22.30 0.22 -1.09 16 26 C 0.12 1.96 7.31 22.47 0.16 2.12 16 27 F -0.13 -2.64 17.08 44.97 0.77 -1.88 16 28 C 0.11 1.67 6.90 86.83 0.60 2.27 16 29 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 30 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 31 H -0.01 -0.80 8.00 -2.39 -0.02 -0.82 16 32 H 0.40 14.74 8.34 -92.71 -0.77 13.97 16 33 H 0.41 9.40 8.59 -92.71 -0.80 8.60 16 34 H 0.09 2.72 8.09 -2.39 -0.02 2.70 16 35 H 0.14 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.19 -0.62 8.06 -2.91 -0.02 -0.65 16 38 H 0.18 0.55 8.06 -2.91 -0.02 0.52 16 39 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.11 1.39 8.04 -2.39 -0.02 1.37 16 Total: -1.00 -84.84 361.25 2.26 -82.58 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -0.34 Total: 20.81 kcal Atomic # 6 Polarization: 23.85 SS G_CDS: 5.50 Total: 29.35 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -6.37 Total: -127.43 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -0.12 Total: -51.45 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 1.54 Total: -4.18 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.05 Total: 50.30 kcal Total: -84.84 2.26 -82.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426429994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.299 kcal (2) G-P(sol) polarization free energy of solvation -84.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds