Wall clock time and date at job start Tue Mar 31 2020 22:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.39911 * 125.81017 * 90.02678 * 10 9 7 12 12 C 1.30458 * 109.22375 * 180.02562 * 11 10 9 13 13 C 1.41097 * 108.30371 * 359.97438 * 12 11 10 14 14 C 1.47146 * 126.48104 * 179.97438 * 13 12 11 15 15 O 1.21642 * 120.00260 * 180.02562 * 14 13 12 16 16 N 1.34784 * 120.00185 * 0.02654 * 14 13 12 17 17 C 1.39831 * 120.00133 * 179.97438 * 16 14 13 18 18 N 1.33373 * 126.25272 * 359.69450 * 17 16 14 19 19 N 1.28571 * 109.88915 * 179.81592 * 18 17 16 20 20 N 1.28944 * 109.63166 * 0.44940 * 19 18 17 21 21 H 0.96996 * 126.48013 * 179.74541 * 20 19 18 22 22 N 1.31661 * 126.25125 * 180.02562 * 17 16 14 23 23 C 1.35189 * 125.80644 * 269.71604 * 10 9 7 24 24 C 1.47742 * 126.47133 * 359.97425 * 23 10 9 25 25 C 1.39617 * 120.14609 * 314.72440 * 24 23 10 26 26 C 1.37948 * 119.84202 * 179.76452 * 25 24 23 27 27 C 1.38372 * 120.15058 * 0.51691 * 26 25 24 28 28 C 1.38362 * 120.29831 * 359.73673 * 27 26 25 29 29 C 1.37950 * 120.15296 * 0.02562 * 28 27 26 30 30 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 32 32 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 33 33 H 1.08009 * 125.84682 * 180.02562 * 12 11 10 34 34 H 0.96997 * 119.99620 * 0.02562 * 16 14 13 35 35 H 1.08000 * 120.07752 * 0.02562 * 25 24 23 36 36 H 1.07999 * 119.92359 * 180.25224 * 26 25 24 37 37 H 1.08001 * 119.84492 * 179.72084 * 27 26 25 38 38 H 1.08001 * 119.92160 * 180.02562 * 28 27 26 39 39 H 1.07996 * 120.07491 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7343 -4.2403 1.1217 12 6 3.5473 -5.1885 0.7451 13 6 3.5753 -5.2141 -0.6654 14 6 4.3619 -6.1282 -1.5084 15 8 4.2970 -6.0456 -2.7203 16 7 5.1544 -7.0572 -0.9378 17 6 5.9015 -7.9263 -1.7390 18 7 5.9201 -7.9502 -3.0723 19 7 6.7178 -8.8714 -3.4822 20 7 7.2341 -9.4798 -2.4693 21 1 7.8647 -10.2161 -2.4988 22 7 6.7105 -8.8745 -1.3148 23 6 2.7128 -4.2125 -1.1092 24 6 2.4149 -3.8693 -2.5150 25 6 1.0967 -3.6494 -2.9190 26 6 0.8262 -3.3245 -4.2321 27 6 1.8568 -3.2268 -5.1503 28 6 3.1648 -3.4487 -4.7578 29 6 3.4499 -3.7695 -3.4467 30 1 -0.4850 0.8401 -0.0004 31 1 0.6242 -2.5609 0.8844 32 1 0.6244 -2.5529 -0.8956 33 1 4.1032 -5.8425 1.4008 34 1 5.2059 -7.1234 0.0285 35 1 0.2911 -3.7293 -2.2041 36 1 -0.1926 -3.1501 -4.5451 37 1 1.6389 -2.9766 -6.1781 38 1 3.9645 -3.3705 -5.4794 39 1 4.4714 -3.9420 -3.1416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429807675.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:50 Heat of formation + Delta-G solvation = 208.294902 kcal Electronic energy + Delta-G solvation = -28395.262336 eV Core-core repulsion = 24343.446223 eV Total energy + Delta-G solvation = -4051.816113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.34304 -41.04492 -39.17078 -38.35148 -35.35841 -33.97331 -33.20953 -32.36169 -31.99163 -31.36545 -30.41340 -28.59614 -27.48536 -24.74492 -24.48749 -23.18467 -22.56941 -22.15581 -21.66646 -20.26943 -19.43097 -18.73696 -17.95580 -16.94438 -16.82912 -16.63403 -16.30133 -15.59004 -15.01998 -14.83511 -14.44908 -14.38339 -14.09085 -13.98318 -13.64647 -13.39681 -13.09830 -12.71558 -12.39507 -12.29457 -12.20755 -11.86690 -11.75192 -11.18543 -11.12095 -10.96970 -10.92098 -10.90056 -10.63167 -10.41314 -10.37892 -10.01363 -9.68127 -9.30926 -9.21441 -8.71261 -8.39997 -8.29282 -7.90553 -6.34895 -4.42068 0.74818 1.27735 1.63859 1.90307 1.95797 2.41769 2.65296 2.71148 3.18782 3.20394 3.23961 3.30056 3.69384 4.08628 4.23621 4.30445 4.50285 4.78511 4.96718 5.03454 5.19417 5.27010 5.34257 5.37780 5.49670 5.58015 5.83778 5.90137 6.09648 6.15062 6.31476 6.36586 6.46030 6.56737 6.77635 6.88194 6.91639 6.94702 6.98964 7.09165 7.37092 7.46971 7.66033 7.73869 8.05875 8.17606 8.25037 8.60892 9.24349 10.73516 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.003442 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.548552 B = 8132.212508 C = 9215.143621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.070 3.930 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.245 3.755 10 N -0.301 5.301 11 N -0.284 5.284 12 C 0.061 3.939 13 C -0.318 4.318 14 C 0.600 3.400 15 O -0.480 6.480 16 N -0.622 5.622 17 C 0.439 3.561 18 N -0.276 5.276 19 N 0.018 4.982 20 N -0.299 5.299 21 H 0.469 0.531 22 N -0.330 5.330 23 C 0.211 3.789 24 C -0.038 4.038 25 C -0.084 4.084 26 C -0.128 4.128 27 C -0.108 4.108 28 C -0.130 4.130 29 C -0.040 4.040 30 H 0.270 0.730 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.182 0.818 34 H 0.426 0.574 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.164 -14.831 -4.908 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.077 5.077 11 N -0.104 5.104 12 C -0.126 4.126 13 C -0.333 4.333 14 C 0.389 3.611 15 O -0.349 6.349 16 N -0.278 5.278 17 C 0.068 3.932 18 N -0.158 5.158 19 N 0.020 4.980 20 N -0.148 5.148 21 H 0.324 0.676 22 N -0.182 5.182 23 C 0.074 3.926 24 C -0.040 4.040 25 C -0.102 4.102 26 C -0.146 4.146 27 C -0.126 4.126 28 C -0.148 4.148 29 C -0.059 4.059 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.198 0.802 34 H 0.264 0.736 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.383 -14.008 -5.144 17.116 hybrid contribution 1.104 0.122 0.559 1.243 sum 9.487 -13.886 -4.586 17.431 Atomic orbital electron populations 1.69892 1.06017 1.28006 1.48668 1.24878 0.94991 0.99419 0.94110 0.86398 0.79510 0.81693 0.79073 1.19789 1.20833 1.19867 1.21149 0.93689 0.89260 1.53660 0.91698 1.20113 0.86192 0.80229 1.00626 1.49713 1.32030 1.24689 1.01241 1.77166 1.14080 1.09823 1.09296 1.23732 0.98396 0.97533 0.92906 1.19425 1.13291 1.07520 0.93110 1.17463 0.77529 0.78411 0.87659 1.90931 1.62430 1.68312 1.13237 1.42715 1.43404 1.32069 1.09654 1.21674 0.92158 0.90824 0.88561 1.75799 1.16500 1.14999 1.08513 1.78463 1.02872 1.00963 1.15688 1.50695 1.34961 1.28756 1.00341 0.67646 1.78813 1.18882 1.13858 1.06677 1.19742 0.92758 0.91544 0.88596 1.17842 0.94048 1.03219 0.88886 1.21221 0.95347 0.97346 0.96329 1.20914 0.99184 1.01411 0.93119 1.21171 0.93004 0.99285 0.99167 1.20943 0.96540 1.01431 0.95860 1.21057 0.98627 0.93990 0.92267 0.92033 0.92270 0.91775 0.80158 0.73561 0.85884 0.86056 0.86436 0.86157 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.18 13.29 55.43 0.74 -23.44 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.33 9.39 -34.44 -0.32 -14.65 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.24 5.92 5.96 -5.20 -0.03 5.89 16 10 N -0.30 -6.53 3.59 -58.19 -0.21 -6.74 16 11 N -0.28 -5.68 12.48 30.82 0.38 -5.29 16 12 C 0.06 0.95 11.48 -17.05 -0.20 0.76 16 13 C -0.32 -5.42 6.12 -104.75 -0.64 -6.07 16 14 C 0.60 9.52 7.66 -12.64 -0.10 9.43 16 15 O -0.48 -8.83 11.63 5.24 0.06 -8.77 16 16 N -0.62 -7.79 5.43 -13.83 -0.08 -7.86 16 17 C 0.44 5.86 8.97 -320.63 -2.88 2.99 16 18 N -0.28 -4.15 10.55 30.06 0.32 -3.83 16 19 N 0.02 0.21 13.43 60.35 0.81 1.02 16 20 N -0.30 -2.57 8.45 60.35 0.51 -2.06 16 21 H 0.47 1.66 8.96 -331.94 -2.98 -1.31 16 22 N -0.33 -3.63 12.89 30.07 0.39 -3.24 16 23 C 0.21 4.20 6.50 -82.06 -0.53 3.66 16 24 C -0.04 -0.74 5.26 -104.99 -0.55 -1.29 16 25 C -0.08 -1.53 8.50 -39.17 -0.33 -1.87 16 26 C -0.13 -2.06 10.03 -39.64 -0.40 -2.45 16 27 C -0.11 -1.62 10.04 -39.49 -0.40 -2.01 16 28 C -0.13 -2.06 10.03 -39.64 -0.40 -2.46 16 29 C -0.04 -0.73 7.54 -39.17 -0.30 -1.02 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.06 1.54 5.09 -51.93 -0.26 1.28 16 33 H 0.18 1.84 7.49 -52.48 -0.39 1.45 16 34 H 0.43 3.86 7.77 -40.82 -0.32 3.54 16 35 H 0.12 2.24 6.56 -52.49 -0.34 1.89 16 36 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.13 2.28 6.74 -52.49 -0.35 1.93 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -33.01 346.59 -9.93 -42.93 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.88 Total: 3.68 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -7.17 Total: -7.34 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 2.86 Total: -51.45 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.06 Total: -8.77 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.01 -9.93 -42.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429807675.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.226 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 218.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 208.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds