Wall clock time and date at job start Tue Mar 31 2020 22:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.39911 * 125.81017 * 90.02678 * 10 9 7 12 12 C 1.30458 * 109.22375 * 180.02562 * 11 10 9 13 13 C 1.41097 * 108.30371 * 359.97438 * 12 11 10 14 14 C 1.47146 * 126.48104 * 179.97438 * 13 12 11 15 15 O 1.21642 * 120.00260 * 180.02562 * 14 13 12 16 16 N 1.34784 * 120.00185 * 0.02654 * 14 13 12 17 17 C 1.39831 * 120.00133 * 179.97438 * 16 14 13 18 18 N 1.33373 * 126.25272 * 359.69450 * 17 16 14 19 19 N 1.28571 * 109.88915 * 179.81592 * 18 17 16 20 20 N 1.28944 * 109.63166 * 0.44940 * 19 18 17 21 21 H 0.96996 * 126.48013 * 179.74541 * 20 19 18 22 22 N 1.31661 * 126.25125 * 180.02562 * 17 16 14 23 23 C 1.35189 * 125.80644 * 269.71604 * 10 9 7 24 24 C 1.47742 * 126.47133 * 359.97425 * 23 10 9 25 25 C 1.39617 * 120.14609 * 314.72440 * 24 23 10 26 26 C 1.37948 * 119.84202 * 179.76452 * 25 24 23 27 27 C 1.38372 * 120.15058 * 0.51691 * 26 25 24 28 28 C 1.38362 * 120.29831 * 359.73673 * 27 26 25 29 29 C 1.37950 * 120.15296 * 0.02562 * 28 27 26 30 30 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 32 32 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 33 33 H 1.08009 * 125.84682 * 180.02562 * 12 11 10 34 34 H 0.96997 * 119.99620 * 0.02562 * 16 14 13 35 35 H 1.08000 * 120.07752 * 0.02562 * 25 24 23 36 36 H 1.07999 * 119.92359 * 180.25224 * 26 25 24 37 37 H 1.08001 * 119.84492 * 179.72084 * 27 26 25 38 38 H 1.08001 * 119.92160 * 180.02562 * 28 27 26 39 39 H 1.07996 * 120.07491 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7343 -4.2403 1.1217 12 6 3.5473 -5.1885 0.7451 13 6 3.5753 -5.2141 -0.6654 14 6 4.3619 -6.1282 -1.5084 15 8 4.2970 -6.0456 -2.7203 16 7 5.1544 -7.0572 -0.9378 17 6 5.9015 -7.9263 -1.7390 18 7 5.9201 -7.9502 -3.0723 19 7 6.7178 -8.8714 -3.4822 20 7 7.2341 -9.4798 -2.4693 21 1 7.8647 -10.2161 -2.4988 22 7 6.7105 -8.8745 -1.3148 23 6 2.7128 -4.2125 -1.1092 24 6 2.4149 -3.8693 -2.5150 25 6 1.0967 -3.6494 -2.9190 26 6 0.8262 -3.3245 -4.2321 27 6 1.8568 -3.2268 -5.1503 28 6 3.1648 -3.4487 -4.7578 29 6 3.4499 -3.7695 -3.4467 30 1 -0.4850 0.8401 -0.0004 31 1 0.6242 -2.5609 0.8844 32 1 0.6244 -2.5529 -0.8956 33 1 4.1032 -5.8425 1.4008 34 1 5.2059 -7.1234 0.0285 35 1 0.2911 -3.7293 -2.2041 36 1 -0.1926 -3.1501 -4.5451 37 1 1.6389 -2.9766 -6.1781 38 1 3.9645 -3.3705 -5.4794 39 1 4.4714 -3.9420 -3.1416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429807675.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:49 Heat of formation + Delta-G solvation = 187.223690 kcal Electronic energy + Delta-G solvation = -28396.176053 eV Core-core repulsion = 24343.446223 eV Total energy + Delta-G solvation = -4052.729830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.28224 -42.45590 -40.41371 -39.65204 -36.47397 -35.80774 -34.17108 -33.90168 -33.16813 -32.76236 -31.72606 -29.94654 -29.25639 -26.05698 -25.63371 -24.71981 -23.82879 -23.51841 -22.83789 -21.52204 -20.81933 -19.73794 -19.22770 -18.80309 -17.92313 -17.78354 -17.57263 -16.96373 -16.58536 -16.38327 -15.81752 -15.67496 -15.44087 -15.08001 -15.01053 -14.87822 -14.49754 -14.19641 -13.97149 -13.59051 -13.47564 -13.20912 -13.06863 -12.92173 -12.72956 -12.40508 -12.28396 -12.00323 -11.94680 -11.86678 -11.84578 -11.77899 -11.00128 -10.74300 -10.68108 -10.35339 -9.80505 -9.72259 -9.27044 -8.36623 -6.51427 -0.21701 -0.02926 0.59227 0.72788 0.77566 1.12017 1.37295 1.38436 1.41752 1.46889 1.60468 1.94411 2.32827 2.43082 2.95672 2.98509 3.10022 3.44368 3.46263 3.76610 3.94880 4.04046 4.11347 4.23159 4.26403 4.29765 4.58244 4.61216 4.78202 4.84949 4.93279 5.01810 5.10399 5.19363 5.46692 5.53891 5.58255 5.61046 5.64020 5.75708 5.76483 5.93845 6.06983 6.12084 6.53947 6.73665 6.96547 7.18335 7.22047 8.71316 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.003442 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.548552 B = 8132.212508 C = 9215.143621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.554 4.554 8 H 0.049 0.951 9 C 0.262 3.738 10 N -0.328 5.328 11 N -0.324 5.324 12 C 0.086 3.914 13 C -0.314 4.314 14 C 0.606 3.394 15 O -0.505 6.505 16 N -0.607 5.607 17 C 0.426 3.574 18 N -0.320 5.320 19 N 0.015 4.985 20 N -0.263 5.263 21 H 0.491 0.509 22 N -0.317 5.317 23 C 0.194 3.806 24 C -0.063 4.063 25 C -0.106 4.106 26 C -0.132 4.132 27 C -0.101 4.101 28 C -0.132 4.132 29 C -0.054 4.054 30 H 0.274 0.726 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.238 0.762 34 H 0.442 0.558 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.147 0.853 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.002 -15.831 -5.719 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.592 4.592 8 H 0.068 0.932 9 C 0.144 3.856 10 N -0.103 5.103 11 N -0.143 5.143 12 C -0.100 4.100 13 C -0.330 4.330 14 C 0.395 3.605 15 O -0.376 6.376 16 N -0.264 5.264 17 C 0.054 3.946 18 N -0.202 5.202 19 N 0.017 4.983 20 N -0.117 5.117 21 H 0.350 0.650 22 N -0.170 5.170 23 C 0.058 3.942 24 C -0.065 4.065 25 C -0.125 4.125 26 C -0.150 4.150 27 C -0.119 4.119 28 C -0.150 4.150 29 C -0.073 4.073 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.254 0.746 34 H 0.284 0.716 35 H 0.128 0.872 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.165 0.835 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.256 -15.061 -5.942 19.166 hybrid contribution 0.668 0.204 0.766 1.036 sum 10.924 -14.857 -5.176 19.154 Atomic orbital electron populations 1.69975 1.07134 1.28939 1.49100 1.25640 0.95792 1.02392 0.93565 0.85495 0.78488 0.78113 0.79006 1.19519 1.19643 1.19621 1.21311 0.93096 0.90831 1.53979 0.93222 1.19581 0.86332 0.80687 0.98997 1.49379 1.33253 1.25338 1.02355 1.77110 1.16030 1.11662 1.09499 1.24598 0.96343 0.96099 0.92980 1.19617 1.12553 1.06854 0.93940 1.17186 0.77619 0.78622 0.87036 1.90919 1.63293 1.69104 1.14288 1.42293 1.42534 1.31165 1.10386 1.21705 0.92998 0.91575 0.88327 1.75775 1.18163 1.16602 1.09639 1.78408 1.02917 1.00923 1.16019 1.50763 1.33662 1.28055 0.99220 0.64964 1.78793 1.18036 1.13011 1.07170 1.20181 0.93237 0.92132 0.88657 1.18058 0.94803 1.04620 0.89046 1.21306 0.94882 0.98860 0.97471 1.21273 1.00943 1.00446 0.92308 1.21602 0.92107 0.97470 1.00705 1.21326 0.97986 1.00282 0.95369 1.21121 0.97979 0.94956 0.93276 0.91685 0.94816 0.92356 0.74580 0.71594 0.87151 0.83689 0.82560 0.83494 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.86 13.29 21.45 0.28 -50.58 16 2 C 0.03 1.50 5.46 84.66 0.46 1.96 16 3 Si 0.97 42.86 29.54 68.60 2.03 44.88 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -30.61 9.39 25.60 0.24 -30.37 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 9 C 0.26 13.45 5.96 85.64 0.51 13.96 16 10 N -0.33 -14.88 3.59 -338.02 -1.21 -16.09 16 11 N -0.32 -13.19 12.48 -56.39 -0.70 -13.89 16 12 C 0.09 2.60 11.48 85.60 0.98 3.59 16 13 C -0.31 -10.72 6.12 -19.95 -0.12 -10.84 16 14 C 0.61 18.93 7.66 86.58 0.66 19.59 16 15 O -0.50 -18.66 11.63 -4.16 -0.05 -18.70 16 16 N -0.61 -14.13 5.43 -315.91 -1.71 -15.85 16 17 C 0.43 10.61 8.97 260.72 2.34 12.95 16 18 N -0.32 -9.28 10.55 -58.81 -0.62 -9.90 16 19 N 0.01 0.32 13.43 37.02 0.50 0.82 16 20 N -0.26 -3.81 8.45 37.02 0.31 -3.49 16 21 H 0.49 1.90 8.96 -340.37 -3.05 -1.15 16 22 N -0.32 -6.14 12.89 -58.79 -0.76 -6.90 16 23 C 0.19 8.01 6.50 41.43 0.27 8.28 16 24 C -0.06 -2.55 5.26 -20.10 -0.11 -2.65 16 25 C -0.11 -4.06 8.50 22.53 0.19 -3.87 16 26 C -0.13 -4.17 10.03 22.23 0.22 -3.94 16 27 C -0.10 -2.83 10.04 22.33 0.22 -2.61 16 28 C -0.13 -4.05 10.03 22.23 0.22 -3.82 16 29 C -0.05 -1.99 7.54 22.53 0.17 -1.82 16 30 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 31 H 0.03 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.06 3.01 5.09 -2.39 -0.01 3.00 16 33 H 0.24 4.01 7.49 -2.91 -0.02 3.99 16 34 H 0.44 6.80 7.77 -92.71 -0.72 6.08 16 35 H 0.11 4.35 6.56 -2.91 -0.02 4.33 16 36 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 37 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 38 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 39 H 0.12 4.40 6.74 -2.91 -0.02 4.39 16 Total: -1.00 -74.79 346.59 1.73 -73.06 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -2.61 Total: 16.23 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 6.27 Total: 0.41 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -3.92 Total: -115.88 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.05 Total: -18.70 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -74.79 1.73 -73.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429807675.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.283 kcal (2) G-P(sol) polarization free energy of solvation -74.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds