Wall clock time and date at job start Tue Mar 31 2020 22:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34649 * 116.99609 * 2 1 4 4 O 1.21510 * 120.00300 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99802 * 180.27478 * 3 2 1 6 6 C 1.39612 * 119.99990 * 175.20468 * 5 3 2 7 7 C 1.38999 * 119.93489 * 34.77008 * 6 5 3 8 8 C 1.37719 * 120.13825 * 179.76077 * 7 6 5 9 9 C 1.39783 * 120.01540 * 0.51167 * 8 7 6 10 10 C 1.47458 * 120.06296 * 179.76155 * 9 8 7 11 11 O 1.21506 * 120.00184 * 179.97438 * 10 9 8 12 12 O 1.34752 * 120.00022 * 359.97438 * 10 9 8 13 13 C 1.45195 * 117.00045 * 179.97438 * 12 10 9 14 14 C 1.53009 * 109.47174 * 179.97438 * 13 12 10 15 15 O 1.42898 * 109.46901 * 65.00503 * 14 13 12 16 16 C 1.42900 * 113.99785 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46963 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00007 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99839 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00047 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00112 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46819 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47570 * 119.99592 * 21 19 17 24 24 H 1.48491 * 109.47387 * 240.00043 * 21 19 17 25 25 C 1.39807 * 119.87752 * 359.74480 * 9 8 7 26 26 C 1.38095 * 119.85590 * 359.97438 * 25 9 8 27 27 O 1.35995 * 120.00462 * 180.02562 * 26 25 9 28 28 H 1.09004 * 109.46391 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47204 * 300.00195 * 1 2 3 30 30 H 1.08993 * 109.47074 * 60.00852 * 1 2 3 31 31 H 0.97004 * 120.00314 * 355.21172 * 5 3 2 32 32 H 1.08001 * 119.93125 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.99057 * 180.25040 * 8 7 6 34 34 H 1.09002 * 109.47746 * 300.00040 * 13 12 10 35 35 H 1.09004 * 109.47203 * 60.00265 * 13 12 10 36 36 H 1.09002 * 109.46709 * 185.00245 * 14 13 12 37 37 H 1.08996 * 109.46754 * 304.99921 * 14 13 12 38 38 H 1.08997 * 109.47056 * 299.99846 * 16 15 14 39 39 H 1.08999 * 109.47329 * 59.99904 * 16 15 14 40 40 H 0.97002 * 120.00194 * 180.02562 * 20 19 17 41 41 H 1.07995 * 120.07118 * 180.02562 * 25 9 8 42 42 H 0.96693 * 113.99753 * 269.97805 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1998 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2704 -0.0056 6 6 4.0427 2.5103 -0.1067 7 6 3.4757 3.6298 0.4911 8 6 4.0996 4.8540 0.3982 9 6 5.3002 4.9752 -0.3073 10 6 5.9664 6.2865 -0.4119 11 8 7.0102 6.3905 -1.0251 12 8 5.4176 7.3696 0.1726 13 6 6.1286 8.6274 0.0290 14 6 5.3587 9.7339 0.7530 15 8 5.3456 9.4652 2.1564 16 6 4.6473 10.4437 2.9291 17 6 4.6962 10.0617 4.3861 18 1 5.2095 9.1619 4.6915 19 6 4.0855 10.8609 5.3291 20 7 3.4609 11.9568 4.9572 21 14 4.1466 10.3878 7.1352 22 1 4.9048 9.1202 7.2894 23 1 4.8189 11.4642 7.9064 24 1 2.7645 10.2025 7.6454 25 6 5.8684 3.8507 -0.9134 26 6 5.2413 2.6245 -0.8121 27 8 5.7916 1.5286 -1.4000 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 3.9377 0.4596 0.0605 32 1 2.5457 3.5387 1.0326 33 1 3.6590 5.7214 0.8671 34 1 7.1243 8.5336 0.4626 35 1 6.2148 8.8774 -1.0284 36 1 5.8440 10.6929 0.5712 37 1 4.3351 9.7682 0.3799 38 1 5.1174 11.4176 2.7925 39 1 3.6090 10.4922 2.6012 40 1 3.0316 12.5193 5.6207 41 1 6.7961 3.9407 -1.4590 42 1 5.4986 1.3815 -2.3097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495598867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:36 Heat of formation + Delta-G solvation = -218.647915 kcal Electronic energy + Delta-G solvation = -28158.828255 eV Core-core repulsion = 23684.311339 eV Total energy + Delta-G solvation = -4474.516916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.51841 -40.50306 -39.65331 -37.42782 -37.17792 -36.62206 -35.99025 -35.34670 -32.76675 -30.90388 -30.48386 -29.65049 -27.98532 -26.92249 -24.84801 -23.17728 -22.65263 -22.29579 -21.75609 -20.93676 -19.53987 -18.96419 -18.11905 -17.40945 -17.02315 -16.91676 -16.55048 -16.47298 -16.24305 -15.74709 -15.36365 -15.17691 -14.65432 -14.51553 -14.34224 -14.30231 -13.97730 -13.74707 -13.23157 -13.12569 -12.63911 -12.59607 -12.52442 -12.13579 -11.92573 -11.57020 -11.41688 -11.31172 -11.13716 -10.91842 -10.87792 -10.77079 -10.67019 -10.41948 -10.36183 -10.04172 -9.17872 -9.10944 -8.87768 -8.64429 -8.21097 -6.11606 -4.13074 0.29965 0.92168 1.52826 2.10715 2.49957 2.68943 3.29616 3.36125 3.37159 3.42903 3.62499 3.75332 4.33107 4.47623 4.61054 4.66947 4.75099 4.76435 4.86793 4.88660 5.01494 5.09621 5.22749 5.25179 5.42932 5.47047 5.65669 5.70228 5.77496 5.86938 5.91919 6.02481 6.04718 6.11731 6.37451 6.54336 6.71918 7.05866 7.13418 7.40238 7.69112 7.78591 7.81060 8.12950 8.52672 8.99977 9.51792 10.99992 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009850 B = 0.002412 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.855126 B =11605.709485 C =13671.161619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.367 6.367 3 C 0.647 3.353 4 O -0.546 6.546 5 N -0.644 5.644 6 C 0.166 3.834 7 C -0.120 4.120 8 C -0.041 4.041 9 C -0.119 4.119 10 C 0.510 3.490 11 O -0.513 6.513 12 O -0.334 6.334 13 C 0.076 3.924 14 C 0.061 3.939 15 O -0.390 6.390 16 C 0.194 3.806 17 C -0.513 4.513 18 H 0.067 0.933 19 C 0.056 3.944 20 N -0.899 5.899 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.060 4.060 26 C 0.068 3.932 27 O -0.489 6.489 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.424 0.576 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.006 0.994 39 H 0.008 0.992 40 H 0.263 0.737 41 H 0.150 0.850 42 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.305 -24.405 -15.706 29.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.281 6.281 3 C 0.401 3.599 4 O -0.433 6.433 5 N -0.296 5.296 6 C 0.071 3.929 7 C -0.140 4.140 8 C -0.059 4.059 9 C -0.121 4.121 10 C 0.355 3.645 11 O -0.404 6.404 12 O -0.250 6.250 13 C 0.002 3.998 14 C -0.017 4.017 15 O -0.310 6.310 16 C 0.120 3.880 17 C -0.552 4.552 18 H 0.086 0.914 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.209 1.209 24 H -0.208 1.208 25 C -0.079 4.079 26 C 0.021 3.979 27 O -0.298 6.298 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.261 0.739 32 H 0.173 0.827 33 H 0.172 0.828 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.073 0.927 41 H 0.168 0.832 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.192 -24.008 -15.183 28.491 hybrid contribution -0.203 -0.108 0.337 0.408 sum -2.395 -24.116 -14.846 28.421 Atomic orbital electron populations 1.23318 0.73414 1.03944 1.03260 1.86250 1.24900 1.30250 1.86651 1.18101 0.82917 0.82675 0.76210 1.91059 1.64288 1.34460 1.53495 1.41738 1.03680 1.09325 1.74850 1.18063 0.91980 0.84968 0.97920 1.21301 1.01942 0.90883 0.99921 1.21591 0.92298 0.98320 0.93730 1.19039 0.97434 0.90912 1.04729 1.20938 0.82720 0.85066 0.75781 1.90820 1.22960 1.86331 1.40273 1.86641 1.51869 1.17531 1.68968 1.23261 0.96485 0.79875 1.00175 1.22332 0.99217 0.94516 0.85587 1.87921 1.77480 1.51428 1.14211 1.20245 0.90760 0.86580 0.90446 1.21087 1.34512 1.09329 0.90226 0.91446 1.24950 0.95074 0.94813 0.99709 1.69970 1.35664 1.13814 1.34360 0.86280 0.77837 0.78617 0.83769 1.19446 1.20852 1.20826 1.21273 0.99809 0.89341 0.97472 1.17756 0.93371 0.87007 0.99741 1.84881 1.69467 1.43221 1.32265 0.87553 0.91324 0.91462 0.73851 0.82673 0.82802 0.90305 0.90275 0.91851 0.93113 0.97602 0.97459 0.92697 0.83196 0.75421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.28 10.56 101.05 1.07 1.35 16 2 O -0.37 -2.83 10.62 -40.35 -0.43 -3.25 16 3 C 0.65 6.25 8.59 54.06 0.46 6.71 16 4 O -0.55 -6.84 13.53 -19.28 -0.26 -7.10 16 5 N -0.64 -5.28 5.17 -14.15 -0.07 -5.36 16 6 C 0.17 1.66 6.32 -83.55 -0.53 1.13 16 7 C -0.12 -1.39 8.67 -39.49 -0.34 -1.73 16 8 C -0.04 -0.50 9.60 -39.19 -0.38 -0.88 16 9 C -0.12 -1.54 5.87 -104.98 -0.62 -2.16 16 10 C 0.51 7.86 7.89 34.49 0.27 8.13 16 11 O -0.51 -8.63 16.13 -19.27 -0.31 -8.94 16 12 O -0.33 -5.59 9.43 -43.41 -0.41 -6.00 16 13 C 0.08 1.20 5.85 37.16 0.22 1.41 16 14 C 0.06 1.11 6.33 37.16 0.24 1.34 16 15 O -0.39 -9.42 10.30 -38.79 -0.40 -9.82 16 16 C 0.19 5.29 5.69 36.01 0.20 5.49 16 17 C -0.51 -15.15 9.43 -34.44 -0.32 -15.47 16 18 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 21 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 C -0.06 -0.65 9.52 -39.05 -0.37 -1.03 16 26 C 0.07 0.64 6.71 -39.15 -0.26 0.38 16 27 O -0.49 -3.43 13.05 -19.72 -0.26 -3.69 16 28 H 0.11 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.42 2.49 8.66 -40.82 -0.35 2.13 16 32 H 0.16 1.88 6.18 -52.49 -0.32 1.55 16 33 H 0.15 1.95 7.60 -52.49 -0.40 1.55 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.15 1.56 7.64 -52.49 -0.40 1.16 16 42 H 0.39 1.08 9.06 45.56 0.41 1.49 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -36.24 377.38 -5.61 -41.85 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.41 Total: -0.35 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.46 Total: 6.20 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.66 Total: -31.47 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -2.07 Total: -38.81 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.24 -5.61 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495598867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.801 kcal (2) G-P(sol) polarization free energy of solvation -36.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds