Wall clock time and date at job start Tue Mar 31 2020 22:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34649 * 116.99609 * 2 1 4 4 O 1.21510 * 120.00300 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99802 * 180.27478 * 3 2 1 6 6 C 1.39612 * 119.99990 * 175.20468 * 5 3 2 7 7 C 1.38999 * 119.93489 * 34.77008 * 6 5 3 8 8 C 1.37719 * 120.13825 * 179.76077 * 7 6 5 9 9 C 1.39783 * 120.01540 * 0.51167 * 8 7 6 10 10 C 1.47458 * 120.06296 * 179.76155 * 9 8 7 11 11 O 1.21506 * 120.00184 * 179.97438 * 10 9 8 12 12 O 1.34752 * 120.00022 * 359.97438 * 10 9 8 13 13 C 1.45195 * 117.00045 * 179.97438 * 12 10 9 14 14 C 1.53009 * 109.47174 * 179.97438 * 13 12 10 15 15 O 1.42898 * 109.46901 * 65.00503 * 14 13 12 16 16 C 1.42900 * 113.99785 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46963 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00007 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99839 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00047 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00112 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46819 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47570 * 119.99592 * 21 19 17 24 24 H 1.48491 * 109.47387 * 240.00043 * 21 19 17 25 25 C 1.39807 * 119.87752 * 359.74480 * 9 8 7 26 26 C 1.38095 * 119.85590 * 359.97438 * 25 9 8 27 27 O 1.35995 * 120.00462 * 180.02562 * 26 25 9 28 28 H 1.09004 * 109.46391 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47204 * 300.00195 * 1 2 3 30 30 H 1.08993 * 109.47074 * 60.00852 * 1 2 3 31 31 H 0.97004 * 120.00314 * 355.21172 * 5 3 2 32 32 H 1.08001 * 119.93125 * 359.97438 * 7 6 5 33 33 H 1.08001 * 119.99057 * 180.25040 * 8 7 6 34 34 H 1.09002 * 109.47746 * 300.00040 * 13 12 10 35 35 H 1.09004 * 109.47203 * 60.00265 * 13 12 10 36 36 H 1.09002 * 109.46709 * 185.00245 * 14 13 12 37 37 H 1.08996 * 109.46754 * 304.99921 * 14 13 12 38 38 H 1.08997 * 109.47056 * 299.99846 * 16 15 14 39 39 H 1.08999 * 109.47329 * 59.99904 * 16 15 14 40 40 H 0.97002 * 120.00194 * 180.02562 * 20 19 17 41 41 H 1.07995 * 120.07118 * 180.02562 * 25 9 8 42 42 H 0.96693 * 113.99753 * 269.97805 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1998 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2704 -0.0056 6 6 4.0427 2.5103 -0.1067 7 6 3.4757 3.6298 0.4911 8 6 4.0996 4.8540 0.3982 9 6 5.3002 4.9752 -0.3073 10 6 5.9664 6.2865 -0.4119 11 8 7.0102 6.3905 -1.0251 12 8 5.4176 7.3696 0.1726 13 6 6.1286 8.6274 0.0290 14 6 5.3587 9.7339 0.7530 15 8 5.3456 9.4652 2.1564 16 6 4.6473 10.4437 2.9291 17 6 4.6962 10.0617 4.3861 18 1 5.2095 9.1619 4.6915 19 6 4.0855 10.8609 5.3291 20 7 3.4609 11.9568 4.9572 21 14 4.1466 10.3878 7.1352 22 1 4.9048 9.1202 7.2894 23 1 4.8189 11.4642 7.9064 24 1 2.7645 10.2025 7.6454 25 6 5.8684 3.8507 -0.9134 26 6 5.2413 2.6245 -0.8121 27 8 5.7916 1.5286 -1.4000 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 3.9377 0.4596 0.0605 32 1 2.5457 3.5387 1.0326 33 1 3.6590 5.7214 0.8671 34 1 7.1243 8.5336 0.4626 35 1 6.2148 8.8774 -1.0284 36 1 5.8440 10.6929 0.5712 37 1 4.3351 9.7682 0.3799 38 1 5.1174 11.4176 2.7925 39 1 3.6090 10.4922 2.6012 40 1 3.0316 12.5193 5.6207 41 1 6.7961 3.9407 -1.4590 42 1 5.4986 1.3815 -2.3097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495598867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:36 Heat of formation + Delta-G solvation = -246.018198 kcal Electronic energy + Delta-G solvation = -28160.015120 eV Core-core repulsion = 23684.311339 eV Total energy + Delta-G solvation = -4475.703781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.30552 -41.58240 -40.53001 -38.76301 -38.08143 -37.61794 -37.29903 -36.16996 -34.94514 -32.02107 -31.55101 -30.73845 -29.04254 -28.47481 -25.81940 -24.55727 -24.03984 -23.71682 -22.77011 -21.93079 -20.26264 -19.85805 -18.92251 -18.70563 -18.38169 -17.93824 -17.81570 -17.66100 -17.28229 -17.04036 -16.62021 -16.33544 -16.25337 -15.95569 -15.31912 -15.11550 -15.08940 -14.66776 -14.51302 -14.37134 -14.00091 -13.71791 -13.48698 -13.23559 -13.09525 -12.93172 -12.89864 -12.72535 -12.46001 -12.27518 -12.05792 -11.95199 -11.89030 -11.74847 -11.72123 -11.39144 -11.26212 -10.90000 -10.26676 -10.04014 -9.47182 -8.32532 -6.44273 -0.64175 0.07902 0.85658 1.18244 1.40227 1.41357 1.53006 1.56155 1.60087 2.34517 2.47373 2.95553 3.01470 3.03818 3.06998 3.50866 3.63946 3.92263 3.96953 4.05447 4.12338 4.22906 4.31551 4.35429 4.40191 4.47190 4.58484 4.68842 4.73561 4.85230 4.86489 4.92325 5.02036 5.10782 5.18109 5.23224 5.33281 5.53386 5.54733 5.95392 6.03857 6.49759 6.60179 6.66214 6.80183 6.99653 7.27291 8.79870 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009850 B = 0.002412 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.855126 B =11605.709485 C =13671.161619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.363 6.363 3 C 0.647 3.353 4 O -0.579 6.579 5 N -0.631 5.631 6 C 0.171 3.829 7 C -0.127 4.127 8 C -0.047 4.047 9 C -0.134 4.134 10 C 0.511 3.489 11 O -0.531 6.531 12 O -0.352 6.352 13 C 0.078 3.922 14 C 0.053 3.947 15 O -0.409 6.409 16 C 0.208 3.792 17 C -0.548 4.548 18 H 0.059 0.941 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.982 3.018 22 H -0.266 1.266 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.057 4.057 26 C 0.090 3.910 27 O -0.485 6.485 28 H 0.140 0.860 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.437 0.563 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.057 0.943 38 H -0.007 1.007 39 H -0.010 1.010 40 H 0.271 0.729 41 H 0.158 0.842 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 -26.587 -15.834 31.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.276 6.276 3 C 0.402 3.598 4 O -0.468 6.468 5 N -0.284 5.284 6 C 0.075 3.925 7 C -0.147 4.147 8 C -0.066 4.066 9 C -0.136 4.136 10 C 0.357 3.643 11 O -0.423 6.423 12 O -0.268 6.268 13 C 0.005 3.995 14 C -0.024 4.024 15 O -0.329 6.329 16 C 0.133 3.867 17 C -0.585 4.585 18 H 0.077 0.923 19 C -0.192 4.192 20 N -0.568 5.568 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.076 4.076 26 C 0.043 3.957 27 O -0.298 6.298 28 H 0.158 0.842 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.277 0.723 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.011 0.989 39 H 0.008 0.992 40 H 0.080 0.920 41 H 0.175 0.825 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -1.959 -26.235 -15.352 30.460 hybrid contribution -0.313 0.453 0.250 0.605 sum -2.272 -25.782 -15.102 29.966 Atomic orbital electron populations 1.23621 0.71986 1.06075 1.02955 1.86276 1.26240 1.28877 1.86173 1.18251 0.83131 0.82811 0.75652 1.91048 1.65064 1.35711 1.54960 1.41627 1.03421 1.09211 1.74138 1.18077 0.92068 0.85169 0.97176 1.21219 1.01795 0.91217 1.00465 1.21452 0.92514 0.98413 0.94259 1.18970 0.97911 0.90366 1.06376 1.21313 0.82526 0.85349 0.75064 1.90796 1.23712 1.86573 1.41194 1.86637 1.52417 1.18191 1.69529 1.23263 0.95478 0.79181 1.01557 1.22663 1.00458 0.96676 0.82571 1.87866 1.76986 1.50781 1.17267 1.19875 0.89851 0.86587 0.90410 1.21405 1.35648 1.09681 0.91815 0.92264 1.25931 0.94026 0.94442 1.04760 1.70063 1.35800 1.14623 1.36353 0.85158 0.78419 0.78606 0.77367 1.19007 1.19562 1.19607 1.21361 0.99971 0.89233 0.97061 1.17553 0.92355 0.87017 0.98808 1.84839 1.69244 1.41751 1.33989 0.84188 0.91843 0.91642 0.72250 0.83493 0.84031 0.90750 0.87018 0.89812 0.92476 0.98935 0.99242 0.92006 0.82485 0.72662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.41 10.56 113.37 1.20 1.61 16 2 O -0.36 -4.98 10.62 -55.58 -0.59 -5.57 16 3 C 0.65 11.78 8.59 129.79 1.11 12.89 16 4 O -0.58 -14.40 13.53 19.81 0.27 -14.13 16 5 N -0.63 -9.25 5.17 -429.09 -2.22 -11.47 16 6 C 0.17 3.20 6.32 38.40 0.24 3.45 16 7 C -0.13 -2.95 8.67 22.33 0.19 -2.75 16 8 C -0.05 -1.21 9.60 22.52 0.22 -1.00 16 9 C -0.13 -3.48 5.87 -20.10 -0.12 -3.59 16 10 C 0.51 15.87 7.89 70.25 0.55 16.42 16 11 O -0.53 -17.70 16.13 19.82 0.32 -17.38 16 12 O -0.35 -11.97 9.43 -53.96 -0.51 -12.47 16 13 C 0.08 2.46 5.85 71.99 0.42 2.89 16 14 C 0.05 1.93 6.33 71.99 0.46 2.39 16 15 O -0.41 -20.24 10.30 -145.57 -1.50 -21.74 16 16 C 0.21 11.70 5.69 71.24 0.41 12.10 16 17 C -0.55 -33.03 9.43 25.60 0.24 -32.79 16 18 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 19 C 0.01 0.40 5.46 84.65 0.46 0.87 16 20 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 21 Si 0.98 44.82 29.54 68.60 2.03 46.84 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 C -0.06 -1.18 9.52 22.62 0.22 -0.96 16 26 C 0.09 1.51 6.71 22.55 0.15 1.66 16 27 O -0.49 -5.27 13.05 -93.49 -1.22 -6.49 16 28 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.44 4.04 8.66 -92.71 -0.80 3.24 16 32 H 0.15 3.68 6.18 -2.91 -0.02 3.66 16 33 H 0.14 3.88 7.60 -2.91 -0.02 3.86 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.11 2.78 8.14 -2.38 -0.02 2.76 16 36 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.16 3.01 7.64 -2.91 -0.02 2.99 16 42 H 0.41 0.76 9.06 -74.06 -0.67 0.09 16 Total: -1.00 -78.52 377.38 2.23 -76.29 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -0.38 Total: 8.55 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 5.75 Total: 13.18 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -1.93 Total: -67.08 kcal Atomic # 8 Polarization: -74.55 SS G_CDS: -3.23 Total: -77.78 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -78.52 2.23 -76.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495598867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.733 kcal (2) G-P(sol) polarization free energy of solvation -78.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds