Wall clock time and date at job start Tue Mar 31 2020 22:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 120.00049 * 2 1 4 4 H 1.48503 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46972 * 299.99919 * 3 2 1 6 6 H 1.48496 * 109.47141 * 59.99680 * 3 2 1 7 7 C 1.38952 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99941 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00263 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00015 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00162 * 180.02562 * 10 9 7 13 13 N 1.46510 * 109.47122 * 180.02562 * 12 10 9 14 14 C 1.38099 * 119.99770 * 179.97438 * 13 12 10 15 15 N 1.32872 * 120.81834 * 0.02562 * 14 13 12 16 16 C 1.32106 * 121.18961 * 179.97438 * 15 14 13 17 17 N 1.31536 * 122.63544 * 359.97438 * 16 15 14 18 18 C 1.33127 * 120.68654 * 359.70286 * 17 16 15 19 19 C 1.40800 * 120.80980 * 179.97438 * 14 13 12 20 20 C 1.41224 * 134.69745 * 359.97438 * 19 14 13 21 21 N 1.30273 * 108.53258 * 180.02562 * 20 19 14 22 22 N 1.36663 * 134.62697 * 179.57606 * 18 17 16 23 23 C 1.39739 * 125.89937 * 0.76238 * 22 18 17 24 24 C 1.39376 * 120.85777 * 144.71800 * 23 22 18 25 25 C 1.37970 * 119.07520 * 179.97438 * 24 23 22 26 26 N 1.31964 * 120.83572 * 359.97438 * 25 24 23 27 27 C 1.31950 * 121.89219 * 0.02562 * 26 25 24 28 28 C 1.37974 * 120.83815 * 359.97438 * 27 26 25 29 29 H 0.97000 * 120.00157 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00502 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47499 * 60.00167 * 12 10 9 32 32 H 1.08996 * 109.47332 * 299.99760 * 12 10 9 33 33 H 0.97000 * 119.99483 * 359.97438 * 13 12 10 34 34 H 1.07999 * 118.68418 * 179.97438 * 16 15 14 35 35 H 1.08000 * 125.73372 * 0.02562 * 20 19 14 36 36 H 1.07994 * 120.46292 * 359.95484 * 24 23 22 37 37 H 1.08004 * 119.58286 * 179.97438 * 25 24 23 38 38 H 1.08009 * 119.58062 * 179.97438 * 27 26 25 39 39 H 1.08005 * 120.46173 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0026 11 8 3.2101 -3.5579 0.0022 12 6 1.2436 -4.8629 0.0032 13 7 2.1957 -5.9765 0.0050 14 6 1.7353 -7.2785 0.0063 15 7 0.4325 -7.5399 0.0055 16 6 -0.0160 -8.7825 0.0063 17 7 0.7851 -9.8257 0.0074 18 6 2.1069 -9.6674 0.0018 19 6 2.6350 -8.3616 0.0074 20 6 4.0419 -8.4842 0.0071 21 7 4.3471 -9.7507 0.0082 22 7 3.1759 -10.5189 0.0083 23 6 3.1115 -11.9148 0.0091 24 6 4.0580 -12.6744 -0.6762 25 6 3.9597 -14.0504 -0.6504 26 7 2.9865 -14.6467 0.0120 27 6 2.0718 -13.9626 0.6728 28 6 2.0999 -12.5834 0.6961 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3907 0.0016 31 1 0.6174 -4.9213 -0.8869 32 1 0.6167 -4.9201 0.8930 33 1 3.1493 -5.7992 0.0052 34 1 -1.0831 -8.9484 0.0061 35 1 4.7464 -7.6656 0.0062 36 1 4.8570 -12.1928 -1.2202 37 1 4.6884 -14.6470 -1.1790 38 1 1.2912 -14.4891 1.2020 39 1 1.3484 -12.0295 1.2393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000505733986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:29 Heat of formation + Delta-G solvation = 129.866134 kcal Electronic energy + Delta-G solvation = -26968.343864 eV Core-core repulsion = 22913.126824 eV Total energy + Delta-G solvation = -4055.217040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.37245 -40.43116 -39.20936 -38.51919 -36.21910 -34.58113 -34.12470 -32.48786 -31.63211 -31.50336 -30.58819 -30.21301 -27.47340 -24.96581 -24.69212 -24.06739 -23.91613 -22.62728 -21.07270 -19.87450 -19.23779 -18.22872 -17.82751 -17.25993 -16.84160 -16.65909 -16.13524 -15.85030 -15.53810 -15.20879 -14.98593 -14.60732 -14.39293 -14.38798 -14.28033 -14.14479 -13.95122 -13.60392 -13.58540 -12.62835 -12.41289 -12.18252 -11.78247 -11.71388 -11.58177 -11.21651 -10.90422 -10.67556 -10.48331 -10.40495 -9.99568 -9.85385 -9.74123 -9.57863 -9.32442 -8.93741 -8.77604 -8.21706 -8.09992 -6.61203 -4.03435 0.28110 0.75030 0.89517 1.37619 1.65215 2.20681 2.92197 3.03349 3.17316 3.23755 3.39457 3.60828 3.74046 3.86219 3.90553 4.02362 4.09838 4.33806 4.38666 4.48205 4.55067 4.73171 4.76202 4.83321 5.05570 5.07310 5.15183 5.34751 5.41574 5.64553 5.66666 5.78603 5.84019 5.95239 6.05839 6.19520 6.45393 6.74615 6.96592 7.08644 7.37322 7.50321 7.58656 7.82411 8.18659 8.33250 8.94628 9.27549 9.74580 10.55381 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.035714 B = 0.001932 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.824225 B =14488.519877 C =15177.492394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.306 4.306 8 H 0.107 0.893 9 N -0.545 5.545 10 C 0.423 3.577 11 O -0.599 6.599 12 C 0.113 3.887 13 N -0.663 5.663 14 C 0.523 3.477 15 N -0.603 5.603 16 C 0.395 3.605 17 N -0.584 5.584 18 C 0.379 3.621 19 C -0.334 4.334 20 C 0.129 3.871 21 N -0.258 5.258 22 N -0.343 5.343 23 C 0.213 3.787 24 C -0.172 4.172 25 C 0.116 3.884 26 N -0.492 5.492 27 C 0.120 3.880 28 C -0.169 4.169 29 H 0.275 0.725 30 H 0.396 0.604 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.424 0.576 34 H 0.205 0.795 35 H 0.204 0.796 36 H 0.144 0.856 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.138 -21.712 0.056 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.179 5.179 10 C 0.209 3.791 11 O -0.486 6.486 12 C -0.015 4.015 13 N -0.293 5.293 14 C 0.269 3.731 15 N -0.332 5.332 16 C 0.103 3.897 17 N -0.313 5.313 18 C 0.135 3.865 19 C -0.351 4.351 20 C -0.068 4.068 21 N -0.069 5.069 22 N -0.125 5.125 23 C 0.113 3.887 24 C -0.194 4.194 25 C -0.041 4.041 26 N -0.201 5.201 27 C -0.037 4.037 28 C -0.192 4.192 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.266 0.734 34 H 0.222 0.778 35 H 0.220 0.780 36 H 0.162 0.838 37 H 0.181 0.819 38 H 0.182 0.818 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.702 -23.342 0.061 23.404 hybrid contribution 0.321 2.743 -0.031 2.762 sum 2.022 -20.599 0.030 20.699 Atomic orbital electron populations 1.69612 1.06029 1.28585 1.48957 1.25341 0.95684 1.00016 0.96590 0.85750 0.79704 0.80706 0.77903 1.19096 1.20548 1.20542 1.19784 0.93527 0.81904 1.48360 0.87550 1.41784 1.09526 1.04454 1.62130 1.19696 0.88303 0.84977 0.86171 1.90510 1.13666 1.86719 1.57677 1.21103 0.91377 0.85058 1.03926 1.44485 1.11132 1.00993 1.72656 1.18011 0.87852 0.84411 0.82813 1.68153 1.12500 1.24357 1.28235 1.24683 0.99675 0.80908 0.84458 1.67587 1.00110 1.36172 1.27399 1.18841 0.88563 0.86996 0.92078 1.19474 0.95360 0.94610 1.25687 1.23916 0.93754 0.94612 0.94477 1.77169 1.03533 1.03373 1.22851 1.45348 1.01887 1.02997 1.62317 1.17651 0.96625 0.78759 0.95694 1.22032 1.00998 0.95265 1.01085 1.22686 0.95301 0.91060 0.95059 1.67700 1.03185 1.41211 1.08053 1.22670 0.96139 0.89961 0.94960 1.22138 1.00105 0.96194 1.00746 0.91525 0.76967 0.89162 0.89164 0.73440 0.77829 0.77958 0.83824 0.81897 0.81785 0.83469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.83 13.05 55.50 0.72 -22.11 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 19.81 29.55 -169.99 -5.02 14.79 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.31 -7.95 9.68 -14.94 -0.14 -8.10 16 8 H 0.11 2.90 7.16 -52.48 -0.38 2.52 16 9 N -0.54 -12.64 5.29 -10.96 -0.06 -12.70 16 10 C 0.42 8.92 7.85 -10.99 -0.09 8.83 16 11 O -0.60 -14.32 15.24 5.55 0.08 -14.24 16 12 C 0.11 1.80 6.21 -5.19 -0.03 1.76 16 13 N -0.66 -9.69 5.65 -61.26 -0.35 -10.04 16 14 C 0.52 7.32 7.55 -154.86 -1.17 6.15 16 15 N -0.60 -8.09 9.69 -13.62 -0.13 -8.22 16 16 C 0.39 4.52 12.24 -92.11 -1.13 3.39 16 17 N -0.58 -7.49 9.71 -13.90 -0.14 -7.62 16 18 C 0.38 5.25 7.57 -155.97 -1.18 4.07 16 19 C -0.33 -4.50 6.14 -106.81 -0.66 -5.16 16 20 C 0.13 1.53 11.87 -17.08 -0.20 1.33 16 21 N -0.26 -3.33 12.23 30.82 0.38 -2.96 16 22 N -0.34 -4.56 3.77 -9.76 -0.04 -4.59 16 23 C 0.21 2.52 6.44 -83.41 -0.54 1.98 16 24 C -0.17 -1.71 9.88 -39.26 -0.39 -2.10 16 25 C 0.12 1.02 11.17 -17.59 -0.20 0.82 16 26 N -0.49 -4.92 10.36 -13.33 -0.14 -5.05 16 27 C 0.12 1.07 11.17 -17.60 -0.20 0.88 16 28 C -0.17 -1.74 9.48 -39.26 -0.37 -2.12 16 29 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.40 8.79 7.90 -40.82 -0.32 8.47 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.42 6.19 7.30 -40.82 -0.30 5.89 16 34 H 0.21 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.20 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.15 1.50 7.36 -52.48 -0.39 1.12 16 LS Contribution 353.24 15.07 5.32 5.32 Total: -1.00 -31.62 353.24 -9.22 -40.84 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -3.48 Total: 14.25 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: -6.39 Total: 12.33 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: 0.26 Total: -73.29 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.08 Total: -14.24 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.62 -9.22 -40.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505733986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.707 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds