Wall clock time and date at job start Tue Mar 31 2020 22:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 120.00049 * 2 1 4 4 H 1.48503 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46972 * 299.99919 * 3 2 1 6 6 H 1.48496 * 109.47141 * 59.99680 * 3 2 1 7 7 C 1.38952 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99941 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00263 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00015 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00162 * 180.02562 * 10 9 7 13 13 N 1.46510 * 109.47122 * 180.02562 * 12 10 9 14 14 C 1.38099 * 119.99770 * 179.97438 * 13 12 10 15 15 N 1.32872 * 120.81834 * 0.02562 * 14 13 12 16 16 C 1.32106 * 121.18961 * 179.97438 * 15 14 13 17 17 N 1.31536 * 122.63544 * 359.97438 * 16 15 14 18 18 C 1.33127 * 120.68654 * 359.70286 * 17 16 15 19 19 C 1.40800 * 120.80980 * 179.97438 * 14 13 12 20 20 C 1.41224 * 134.69745 * 359.97438 * 19 14 13 21 21 N 1.30273 * 108.53258 * 180.02562 * 20 19 14 22 22 N 1.36663 * 134.62697 * 179.57606 * 18 17 16 23 23 C 1.39739 * 125.89937 * 0.76238 * 22 18 17 24 24 C 1.39376 * 120.85777 * 144.71800 * 23 22 18 25 25 C 1.37970 * 119.07520 * 179.97438 * 24 23 22 26 26 N 1.31964 * 120.83572 * 359.97438 * 25 24 23 27 27 C 1.31950 * 121.89219 * 0.02562 * 26 25 24 28 28 C 1.37974 * 120.83815 * 359.97438 * 27 26 25 29 29 H 0.97000 * 120.00157 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00502 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47499 * 60.00167 * 12 10 9 32 32 H 1.08996 * 109.47332 * 299.99760 * 12 10 9 33 33 H 0.97000 * 119.99483 * 359.97438 * 13 12 10 34 34 H 1.07999 * 118.68418 * 179.97438 * 16 15 14 35 35 H 1.08000 * 125.73372 * 0.02562 * 20 19 14 36 36 H 1.07994 * 120.46292 * 359.95484 * 24 23 22 37 37 H 1.08004 * 119.58286 * 179.97438 * 25 24 23 38 38 H 1.08009 * 119.58062 * 179.97438 * 27 26 25 39 39 H 1.08005 * 120.46173 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0026 11 8 3.2101 -3.5579 0.0022 12 6 1.2436 -4.8629 0.0032 13 7 2.1957 -5.9765 0.0050 14 6 1.7353 -7.2785 0.0063 15 7 0.4325 -7.5399 0.0055 16 6 -0.0160 -8.7825 0.0063 17 7 0.7851 -9.8257 0.0074 18 6 2.1069 -9.6674 0.0018 19 6 2.6350 -8.3616 0.0074 20 6 4.0419 -8.4842 0.0071 21 7 4.3471 -9.7507 0.0082 22 7 3.1759 -10.5189 0.0083 23 6 3.1115 -11.9148 0.0091 24 6 4.0580 -12.6744 -0.6762 25 6 3.9597 -14.0504 -0.6504 26 7 2.9865 -14.6467 0.0120 27 6 2.0718 -13.9626 0.6728 28 6 2.0999 -12.5834 0.6961 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3907 0.0016 31 1 0.6174 -4.9213 -0.8869 32 1 0.6167 -4.9201 0.8930 33 1 3.1493 -5.7992 0.0052 34 1 -1.0831 -8.9484 0.0061 35 1 4.7464 -7.6656 0.0062 36 1 4.8570 -12.1928 -1.2202 37 1 4.6884 -14.6470 -1.1790 38 1 1.2912 -14.4891 1.2020 39 1 1.3484 -12.0295 1.2393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000505733986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:29 Heat of formation + Delta-G solvation = 109.805435 kcal Electronic energy + Delta-G solvation = -26969.213762 eV Core-core repulsion = 22913.126824 eV Total energy + Delta-G solvation = -4056.086937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.32697 -41.22766 -40.45819 -39.88545 -37.40652 -36.02913 -35.38360 -33.54093 -33.33982 -32.36010 -31.64514 -31.09759 -28.85496 -26.51903 -25.68230 -25.01401 -24.78892 -23.58400 -21.97034 -21.40705 -20.37104 -19.98168 -18.85708 -18.37281 -17.89592 -17.55752 -17.16629 -16.89545 -16.79523 -16.40466 -16.29378 -16.08513 -15.61069 -15.39425 -15.27437 -15.09719 -14.92213 -14.65520 -14.60534 -14.04658 -13.95180 -13.53930 -12.97893 -12.95714 -12.74311 -12.57368 -12.43601 -12.11691 -11.88216 -11.61154 -11.55941 -10.86970 -10.74216 -10.55767 -10.33195 -10.26562 -10.08997 -9.86293 -9.16258 -8.50869 -6.00240 -0.61500 -0.04077 0.04196 0.42387 0.75331 1.27209 1.35342 1.43833 1.56501 1.77832 1.91797 2.29547 2.64187 2.76756 2.94704 3.00610 3.12587 3.17072 3.37086 3.47840 3.52476 3.64781 3.77289 3.93369 4.04632 4.13915 4.25840 4.40202 4.47400 4.48341 4.60515 4.76529 4.83508 5.01205 5.18005 5.39152 5.42152 5.52947 5.71566 5.89878 5.95964 6.12866 6.43439 6.49086 6.87420 7.04970 7.19656 7.45428 7.95977 8.65891 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.035714 B = 0.001932 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.824225 B =14488.519877 C =15177.492394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.009 4.009 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.429 3.571 11 O -0.627 6.627 12 C 0.132 3.868 13 N -0.668 5.668 14 C 0.520 3.480 15 N -0.613 5.613 16 C 0.395 3.605 17 N -0.588 5.588 18 C 0.363 3.637 19 C -0.344 4.344 20 C 0.131 3.869 21 N -0.271 5.271 22 N -0.347 5.347 23 C 0.184 3.816 24 C -0.176 4.176 25 C 0.121 3.879 26 N -0.506 5.506 27 C 0.124 3.876 28 C -0.175 4.175 29 H 0.279 0.721 30 H 0.400 0.600 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.424 0.576 34 H 0.244 0.756 35 H 0.230 0.770 36 H 0.148 0.852 37 H 0.194 0.806 38 H 0.194 0.806 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -22.849 0.003 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.210 4.210 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.103 0.897 9 N -0.193 5.193 10 C 0.216 3.784 11 O -0.515 6.515 12 C 0.005 3.995 13 N -0.299 5.299 14 C 0.266 3.734 15 N -0.343 5.343 16 C 0.104 3.896 17 N -0.316 5.316 18 C 0.119 3.881 19 C -0.362 4.362 20 C -0.065 4.065 21 N -0.082 5.082 22 N -0.130 5.130 23 C 0.085 3.915 24 C -0.198 4.198 25 C -0.036 4.036 26 N -0.216 5.216 27 C -0.033 4.033 28 C -0.197 4.197 29 H 0.089 0.911 30 H 0.235 0.765 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.265 0.735 34 H 0.260 0.740 35 H 0.246 0.754 36 H 0.166 0.834 37 H 0.211 0.789 38 H 0.210 0.790 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.255 -24.534 0.008 24.566 hybrid contribution 0.463 2.911 -0.015 2.947 sum 1.718 -21.623 -0.006 21.691 Atomic orbital electron populations 1.69666 1.06854 1.29521 1.49296 1.26061 0.96513 1.02514 0.95897 0.84862 0.78153 0.77047 0.78247 1.19576 1.19754 1.19741 1.19737 0.92919 0.83601 1.50238 0.89693 1.41817 1.09659 1.04521 1.63285 1.20528 0.88153 0.86105 0.83582 1.90490 1.15335 1.87552 1.58146 1.20882 0.90882 0.82504 1.05269 1.44350 1.10762 1.00937 1.73840 1.18055 0.88359 0.84004 0.82975 1.68198 1.12156 1.25377 1.28595 1.25498 1.01101 0.80011 0.83004 1.67679 0.99821 1.36644 1.27426 1.19132 0.89133 0.87408 0.92436 1.19613 0.96088 0.94428 1.26070 1.24367 0.93713 0.94946 0.93516 1.77130 1.03948 1.03804 1.23362 1.45513 1.01724 1.03578 1.62185 1.18070 0.97971 0.78394 0.97098 1.22172 1.00825 0.95768 1.01071 1.23171 0.95298 0.90810 0.94300 1.67796 1.03726 1.41559 1.08545 1.23121 0.96334 0.89508 0.94303 1.22203 0.99858 0.96766 1.00906 0.91095 0.76523 0.87725 0.87699 0.73540 0.74007 0.75377 0.83390 0.78895 0.78965 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.58 13.05 21.66 0.28 -46.30 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 3 Si 0.99 40.52 29.55 68.60 2.03 42.54 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.34 -17.70 9.68 84.04 0.81 -16.89 16 8 H 0.09 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.56 -26.12 5.29 -306.98 -1.62 -27.75 16 10 C 0.43 18.10 7.85 87.66 0.69 18.79 16 11 O -0.63 -30.30 15.24 -3.07 -0.05 -30.34 16 12 C 0.13 4.07 6.21 85.63 0.53 4.60 16 13 N -0.67 -18.98 5.65 -347.73 -1.97 -20.94 16 14 C 0.52 14.04 7.55 133.64 1.01 15.05 16 15 N -0.61 -15.50 9.69 -197.02 -1.91 -17.41 16 16 C 0.39 8.33 12.24 180.87 2.21 10.54 16 17 N -0.59 -14.40 9.71 -197.89 -1.92 -16.32 16 18 C 0.36 9.86 7.57 134.05 1.02 10.88 16 19 C -0.34 -9.09 6.14 -21.28 -0.13 -9.23 16 20 C 0.13 3.04 11.87 85.66 1.02 4.05 16 21 N -0.27 -6.92 12.23 -56.41 -0.69 -7.61 16 22 N -0.35 -9.13 3.77 -184.78 -0.70 -9.83 16 23 C 0.18 4.27 6.44 38.43 0.25 4.51 16 24 C -0.18 -3.36 9.88 22.48 0.22 -3.14 16 25 C 0.12 1.91 11.17 84.61 0.95 2.85 16 26 N -0.51 -9.21 10.36 -196.08 -2.03 -11.24 16 27 C 0.12 2.02 11.17 84.61 0.95 2.97 16 28 C -0.17 -3.46 9.48 22.48 0.21 -3.25 16 29 H 0.28 13.35 8.31 -92.71 -0.77 12.58 16 30 H 0.40 17.84 7.90 -92.71 -0.73 17.11 16 31 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.11 2.97 8.14 -2.39 -0.02 2.96 16 33 H 0.42 12.19 7.30 -92.71 -0.68 11.52 16 34 H 0.24 2.86 8.06 -2.91 -0.02 2.84 16 35 H 0.23 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 37 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.15 2.88 7.36 -2.91 -0.02 2.86 16 Total: -1.00 -67.96 353.24 1.37 -66.60 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -0.26 Total: 36.85 kcal Atomic # 6 Polarization: 31.56 SS G_CDS: 10.20 Total: 41.76 kcal Atomic # 7 Polarization: -146.85 SS G_CDS: -10.56 Total: -157.40 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.05 Total: -30.34 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.54 kcal Total: -67.96 1.37 -66.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505733986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.401 kcal (2) G-P(sol) polarization free energy of solvation -67.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds