Wall clock time and date at job start Tue Mar 31 2020 22:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 120.00478 * 2 1 4 4 H 1.48502 * 109.47033 * 270.00064 * 3 2 1 5 5 H 1.48496 * 109.47060 * 29.99985 * 3 2 1 6 6 H 1.48498 * 109.47215 * 150.00299 * 3 2 1 7 7 C 1.38955 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99775 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00248 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00130 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00146 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99971 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46990 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99573 * 180.02562 * 13 12 10 15 15 C 1.53008 * 109.46622 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.47223 * 304.99930 * 15 14 13 17 17 O 1.42900 * 109.47139 * 65.00304 * 15 14 13 18 18 C 1.53008 * 109.46744 * 185.00131 * 15 14 13 19 19 O 1.42894 * 109.46781 * 175.00274 * 18 15 14 20 20 C 1.35902 * 117.00131 * 179.97438 * 19 18 15 21 21 C 1.38752 * 120.05243 * 359.72399 * 20 19 18 22 22 C 1.38116 * 119.94432 * 179.79087 * 21 20 19 23 23 C 1.38294 * 120.05749 * 0.48323 * 22 21 20 24 24 C 1.38242 * 120.10831 * 359.74577 * 23 22 21 25 25 C 1.38173 * 120.05395 * 0.02562 * 24 23 22 26 26 N 1.48005 * 120.02723 * 180.02562 * 25 24 23 27 27 O 1.21806 * 119.99908 * 359.97168 * 26 25 24 28 28 O 1.21795 * 120.00304 * 179.97438 * 26 25 24 29 29 H 0.97008 * 119.99231 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99787 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47064 * 60.00053 * 12 10 9 32 32 H 1.09000 * 109.47099 * 299.99779 * 12 10 9 33 33 H 1.00896 * 111.00309 * 56.04484 * 13 12 10 34 34 H 1.08990 * 109.47358 * 299.99539 * 14 13 12 35 35 H 1.09004 * 109.47457 * 60.00221 * 14 13 12 36 36 H 0.96697 * 114.00040 * 59.99197 * 17 15 14 37 37 H 1.09005 * 109.46614 * 294.99810 * 18 15 14 38 38 H 1.08993 * 109.46898 * 55.00161 * 18 15 14 39 39 H 1.08001 * 120.02868 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.97446 * 180.22798 * 22 21 20 41 41 H 1.08002 * 119.94644 * 179.76855 * 23 22 21 42 42 H 1.07995 * 119.97329 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4458 2.6526 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3798 -1.2036 0.0000 10 6 4.0536 -2.3708 0.0000 11 8 3.4471 -3.4211 0.0000 12 6 5.5605 -2.3709 0.0000 13 7 6.0501 -3.7560 0.0006 14 6 7.5186 -3.7952 0.0012 15 6 7.9898 -5.2509 0.0025 16 1 7.5405 -5.7775 0.8446 17 8 7.5953 -5.8803 -1.2182 18 6 9.5140 -5.2934 0.1289 19 8 9.9445 -6.6508 0.2472 20 6 11.2808 -6.8661 0.3684 21 6 12.1604 -5.7929 0.3677 22 6 13.5177 -6.0139 0.4953 23 6 14.0014 -7.3041 0.6138 24 6 13.1275 -8.3753 0.6100 25 6 11.7683 -8.1591 0.4873 26 7 10.8333 -9.3064 0.4839 27 8 11.2619 -10.4417 0.5888 28 8 9.6352 -9.1153 0.3762 29 1 -0.4849 0.8402 0.0004 30 1 3.8649 -0.3635 0.0004 31 1 5.9239 -1.8571 0.8900 32 1 5.9239 -1.8571 -0.8900 33 1 5.6746 -4.2726 -0.7805 34 1 7.8959 -3.2916 -0.8887 35 1 7.8952 -3.2910 0.8913 36 1 7.9591 -5.4633 -2.0112 37 1 9.9646 -4.8452 -0.7566 38 1 9.8208 -4.7365 1.0142 39 1 11.7836 -4.7854 0.2703 40 1 14.2025 -5.1787 0.4985 41 1 15.0634 -7.4751 0.7098 42 1 13.5075 -9.3819 0.7031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563012365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:29 Heat of formation + Delta-G solvation = -85.308464 kcal Electronic energy + Delta-G solvation = -28053.141345 eV Core-core repulsion = 23616.699212 eV Total energy + Delta-G solvation = -4436.442133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.35923 -40.83297 -38.96817 -38.43636 -37.48135 -36.52704 -34.94479 -33.87236 -32.65616 -31.70149 -31.46968 -30.49437 -27.74909 -26.72357 -25.34498 -23.72273 -22.90848 -22.69955 -21.83575 -19.85708 -19.41582 -18.76623 -18.54194 -18.35997 -17.71648 -17.22243 -17.07904 -16.38841 -15.93131 -15.90578 -15.71305 -15.36622 -15.05126 -14.75949 -14.62842 -13.87961 -13.67498 -13.49543 -13.33452 -13.12492 -12.86423 -12.74302 -12.40426 -12.18601 -11.96480 -11.78666 -11.73984 -11.62945 -11.30224 -11.19077 -11.16522 -11.08130 -10.62458 -10.43332 -10.25287 -9.98833 -9.59283 -9.26348 -8.63936 -8.26668 -8.18963 -6.32264 -3.83851 -0.47259 0.37552 1.03794 1.19443 2.18058 2.69101 2.99643 3.03779 3.12626 3.66325 3.71269 3.81544 3.89718 4.03167 4.08174 4.17275 4.25442 4.35940 4.40530 4.49392 4.68631 4.69463 4.76847 4.82671 5.01540 5.04682 5.19851 5.22452 5.31825 5.43272 5.50698 5.63139 5.72153 5.75819 5.87979 6.14022 6.45962 6.94374 7.38006 7.50642 7.53745 7.56396 8.13190 8.58029 8.93732 9.40588 9.80611 10.80847 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025934 B = 0.001750 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.389653 B =15996.651799 C =16913.628955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.041 3.959 3 Si 0.881 3.119 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.560 6.560 12 C 0.048 3.952 13 N -0.663 5.663 14 C 0.034 3.966 15 C 0.113 3.887 16 H 0.126 0.874 17 O -0.540 6.540 18 C 0.020 3.980 19 O -0.265 6.265 20 C 0.200 3.800 21 C -0.217 4.217 22 C -0.027 4.027 23 C -0.161 4.161 24 C -0.020 4.020 25 C -0.084 4.084 26 N 0.032 4.968 27 O -0.186 6.186 28 O -0.122 6.122 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.361 0.639 34 H 0.033 0.967 35 H 0.083 0.917 36 H 0.369 0.631 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.673 -6.724 -0.320 35.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.138 0.862 9 N -0.230 5.230 10 C 0.234 3.766 11 O -0.442 6.442 12 C -0.084 4.084 13 N -0.297 5.297 14 C -0.097 4.097 15 C 0.053 3.947 16 H 0.143 0.857 17 O -0.343 6.343 18 C -0.055 4.055 19 O -0.175 6.175 20 C 0.150 3.850 21 C -0.236 4.236 22 C -0.045 4.045 23 C -0.180 4.180 24 C -0.039 4.039 25 C -0.168 4.168 26 N 0.551 4.449 27 O -0.393 6.393 28 O -0.346 6.346 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.182 0.818 34 H 0.051 0.949 35 H 0.101 0.899 36 H 0.215 0.785 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 33.961 -7.415 0.767 34.770 hybrid contribution 1.061 2.173 -1.181 2.691 sum 35.022 -5.242 -0.414 35.414 Atomic orbital electron populations 1.69628 1.05630 1.27479 1.49287 1.25048 0.95505 0.97963 0.97693 0.86661 0.79755 0.84080 0.78796 1.19689 1.20160 1.19553 1.19447 0.79209 0.96687 1.48061 0.86219 1.42194 1.07551 1.06081 1.67175 1.19659 0.88103 0.84637 0.84220 1.90592 1.69314 1.30877 1.53400 1.21721 0.95378 0.90112 1.01215 1.59936 1.04544 1.12770 1.52426 1.22507 0.90626 0.95181 1.01369 1.22002 0.88843 0.93856 0.89983 0.85653 1.86802 1.74741 1.57983 1.14790 1.23906 0.98243 0.80903 1.02493 1.86518 1.17145 1.29306 1.84533 1.18770 0.84989 0.91385 0.89895 1.21394 0.93911 0.98528 1.09801 1.21435 0.94756 0.97865 0.90434 1.21131 1.00637 0.91393 1.04805 1.20997 0.89035 1.02202 0.91637 1.20598 0.90665 0.84094 1.21463 1.43348 1.01830 1.01720 0.98036 1.94519 1.82232 1.07670 1.54884 1.94675 0.97202 1.91663 1.51066 0.91601 0.79746 0.89476 0.93756 0.81797 0.94918 0.89897 0.78496 0.90960 0.90107 0.83151 0.83728 0.83462 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.10 27.74 -169.99 -4.71 14.38 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 7 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 8 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 9 N -0.59 -13.90 5.09 -10.97 -0.06 -13.96 16 10 C 0.45 10.08 7.82 -10.99 -0.09 9.99 16 11 O -0.56 -15.19 15.78 5.55 0.09 -15.10 16 12 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 13 N -0.66 -9.76 6.13 -115.05 -0.70 -10.46 16 14 C 0.03 0.31 5.36 -3.82 -0.02 0.29 16 15 C 0.11 1.07 3.49 -26.72 -0.09 0.98 16 16 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 17 O -0.54 -5.99 12.83 -40.09 -0.51 -6.50 16 18 C 0.02 0.13 4.37 37.16 0.16 0.30 16 19 O -0.27 -2.67 8.11 -45.43 -0.37 -3.04 16 20 C 0.20 1.70 6.67 -39.22 -0.26 1.44 16 21 C -0.22 -1.06 9.04 -39.44 -0.36 -1.42 16 22 C -0.03 -0.08 10.04 -39.61 -0.40 -0.48 16 23 C -0.16 -0.58 10.04 -39.56 -0.40 -0.98 16 24 C -0.02 -0.12 9.55 -39.60 -0.38 -0.50 16 25 C -0.08 -0.81 6.87 -79.81 -0.55 -1.36 16 26 N 0.03 0.42 4.45 34.03 0.15 0.57 16 27 O -0.19 -2.48 18.45 -29.46 -0.54 -3.03 16 28 O -0.12 -1.88 17.24 -36.49 -0.63 -2.51 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.37 7.55 5.76 -40.82 -0.24 7.31 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.36 5.82 7.99 -39.29 -0.31 5.51 16 34 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.37 2.56 9.05 45.56 0.41 2.97 16 37 H 0.07 0.30 7.65 -51.93 -0.40 -0.09 16 38 H 0.08 0.37 7.68 -51.93 -0.40 -0.03 16 39 H 0.15 0.39 6.30 -52.49 -0.33 0.06 16 40 H 0.14 0.03 8.06 -52.49 -0.42 -0.40 16 41 H 0.15 0.12 8.06 -52.49 -0.42 -0.30 16 42 H 0.16 0.79 7.61 -52.49 -0.40 0.39 16 LS Contribution 370.13 15.07 5.58 5.58 Total: -1.00 -37.90 370.13 -7.77 -45.67 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -4.18 Total: 12.07 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -2.65 Total: 1.23 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.17 Total: -48.75 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -1.97 Total: -30.17 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.90 -7.77 -45.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563012365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.635 kcal (2) G-P(sol) polarization free energy of solvation -37.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds