Wall clock time and date at job start Tue Mar 31 2020 22:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 120.00478 * 2 1 4 4 H 1.48502 * 109.47033 * 270.00064 * 3 2 1 5 5 H 1.48496 * 109.47060 * 29.99985 * 3 2 1 6 6 H 1.48498 * 109.47215 * 150.00299 * 3 2 1 7 7 C 1.38955 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99775 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00248 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00130 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00146 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99971 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46990 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99573 * 180.02562 * 13 12 10 15 15 C 1.53008 * 109.46622 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.47223 * 304.99930 * 15 14 13 17 17 O 1.42900 * 109.47139 * 65.00304 * 15 14 13 18 18 C 1.53008 * 109.46744 * 185.00131 * 15 14 13 19 19 O 1.42894 * 109.46781 * 175.00274 * 18 15 14 20 20 C 1.35902 * 117.00131 * 179.97438 * 19 18 15 21 21 C 1.38752 * 120.05243 * 359.72399 * 20 19 18 22 22 C 1.38116 * 119.94432 * 179.79087 * 21 20 19 23 23 C 1.38294 * 120.05749 * 0.48323 * 22 21 20 24 24 C 1.38242 * 120.10831 * 359.74577 * 23 22 21 25 25 C 1.38173 * 120.05395 * 0.02562 * 24 23 22 26 26 N 1.48005 * 120.02723 * 180.02562 * 25 24 23 27 27 O 1.21806 * 119.99908 * 359.97168 * 26 25 24 28 28 O 1.21795 * 120.00304 * 179.97438 * 26 25 24 29 29 H 0.97008 * 119.99231 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99787 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47064 * 60.00053 * 12 10 9 32 32 H 1.09000 * 109.47099 * 299.99779 * 12 10 9 33 33 H 1.00896 * 111.00309 * 56.04484 * 13 12 10 34 34 H 1.08990 * 109.47358 * 299.99539 * 14 13 12 35 35 H 1.09004 * 109.47457 * 60.00221 * 14 13 12 36 36 H 0.96697 * 114.00040 * 59.99197 * 17 15 14 37 37 H 1.09005 * 109.46614 * 294.99810 * 18 15 14 38 38 H 1.08993 * 109.46898 * 55.00161 * 18 15 14 39 39 H 1.08001 * 120.02868 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.97446 * 180.22798 * 22 21 20 41 41 H 1.08002 * 119.94644 * 179.76855 * 23 22 21 42 42 H 1.07995 * 119.97329 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4458 2.6526 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3798 -1.2036 0.0000 10 6 4.0536 -2.3708 0.0000 11 8 3.4471 -3.4211 0.0000 12 6 5.5605 -2.3709 0.0000 13 7 6.0501 -3.7560 0.0006 14 6 7.5186 -3.7952 0.0012 15 6 7.9898 -5.2509 0.0025 16 1 7.5405 -5.7775 0.8446 17 8 7.5953 -5.8803 -1.2182 18 6 9.5140 -5.2934 0.1289 19 8 9.9445 -6.6508 0.2472 20 6 11.2808 -6.8661 0.3684 21 6 12.1604 -5.7929 0.3677 22 6 13.5177 -6.0139 0.4953 23 6 14.0014 -7.3041 0.6138 24 6 13.1275 -8.3753 0.6100 25 6 11.7683 -8.1591 0.4873 26 7 10.8333 -9.3064 0.4839 27 8 11.2619 -10.4417 0.5888 28 8 9.6352 -9.1153 0.3762 29 1 -0.4849 0.8402 0.0004 30 1 3.8649 -0.3635 0.0004 31 1 5.9239 -1.8571 0.8900 32 1 5.9239 -1.8571 -0.8900 33 1 5.6746 -4.2726 -0.7805 34 1 7.8959 -3.2916 -0.8887 35 1 7.8952 -3.2910 0.8913 36 1 7.9591 -5.4633 -2.0112 37 1 9.9646 -4.8452 -0.7566 38 1 9.8208 -4.7365 1.0142 39 1 11.7836 -4.7854 0.2703 40 1 14.2025 -5.1787 0.4985 41 1 15.0634 -7.4751 0.7098 42 1 13.5075 -9.3819 0.7031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563012365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:28 Heat of formation + Delta-G solvation = -117.849495 kcal Electronic energy + Delta-G solvation = -28054.552430 eV Core-core repulsion = 23616.699212 eV Total energy + Delta-G solvation = -4437.853218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.18348 -41.40562 -40.34007 -39.38955 -38.24508 -37.47463 -36.26689 -35.63505 -33.75336 -33.15128 -32.07602 -31.13360 -28.92182 -27.46703 -26.67766 -24.93940 -23.55766 -23.31798 -22.53613 -21.29762 -20.53048 -20.26906 -19.64501 -19.07710 -18.56549 -18.05818 -17.74714 -17.50262 -17.14024 -16.64543 -16.56324 -16.22647 -15.98846 -15.78998 -15.55565 -15.13907 -14.94386 -14.52264 -14.43391 -14.18392 -13.92497 -13.73738 -13.29070 -13.19504 -13.02067 -12.72360 -12.71559 -12.64511 -12.41320 -12.24241 -12.17448 -12.15638 -11.97491 -11.81024 -11.51389 -11.15884 -10.66837 -10.43916 -10.25480 -9.69380 -9.33356 -8.41159 -6.02856 -1.18075 0.00184 0.31879 0.48285 1.30156 1.36566 1.45879 1.68241 1.95922 2.23896 2.31083 2.72687 3.15044 3.22798 3.38156 3.43617 3.52663 3.74391 3.86206 3.93944 3.97152 4.03219 4.06464 4.16183 4.27112 4.33596 4.45179 4.47340 4.53976 4.69730 4.72067 4.97653 5.01865 5.12660 5.23367 5.41782 5.52369 5.88903 5.97124 6.05297 6.33932 6.51726 6.59709 6.83808 6.88188 7.39459 7.97428 8.76736 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025934 B = 0.001750 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.389653 B =15996.651799 C =16913.628955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.018 4.018 3 Si 0.970 3.030 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.228 1.228 7 C -0.332 4.332 8 H 0.051 0.949 9 N -0.589 5.589 10 C 0.443 3.557 11 O -0.618 6.618 12 C 0.065 3.935 13 N -0.693 5.693 14 C 0.040 3.960 15 C 0.113 3.887 16 H 0.087 0.913 17 O -0.571 6.571 18 C 0.023 3.977 19 O -0.302 6.302 20 C 0.181 3.819 21 C -0.212 4.212 22 C -0.007 4.007 23 C -0.147 4.147 24 C -0.031 4.031 25 C -0.116 4.116 26 N 0.037 4.963 27 O -0.192 6.192 28 O -0.196 6.196 29 H 0.279 0.721 30 H 0.391 0.609 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.347 0.653 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.385 0.615 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.181 0.819 40 H 0.190 0.810 41 H 0.184 0.816 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 40.865 -2.365 -0.371 40.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.217 4.217 3 Si 0.789 3.211 4 H -0.180 1.180 5 H -0.202 1.202 6 H -0.151 1.151 7 C -0.461 4.461 8 H 0.069 0.931 9 N -0.231 5.231 10 C 0.231 3.769 11 O -0.503 6.503 12 C -0.067 4.067 13 N -0.327 5.327 14 C -0.088 4.088 15 C 0.053 3.947 16 H 0.105 0.895 17 O -0.378 6.378 18 C -0.051 4.051 19 O -0.213 6.213 20 C 0.131 3.869 21 C -0.231 4.231 22 C -0.025 4.025 23 C -0.165 4.165 24 C -0.050 4.050 25 C -0.202 4.202 26 N 0.546 4.454 27 O -0.403 6.403 28 O -0.405 6.405 29 H 0.089 0.911 30 H 0.227 0.773 31 H 0.137 0.863 32 H 0.102 0.898 33 H 0.166 0.834 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.234 0.766 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.198 0.802 40 H 0.207 0.793 41 H 0.201 0.799 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 40.102 -3.030 0.709 40.222 hybrid contribution -0.718 0.710 -1.160 1.538 sum 39.384 -2.320 -0.451 39.455 Atomic orbital electron populations 1.69826 1.08296 1.29300 1.50211 1.26205 0.96531 1.02968 0.95963 0.85301 0.79524 0.76261 0.79990 1.17999 1.20150 1.15065 1.19008 0.81681 0.94869 1.50548 0.93081 1.42000 1.05698 1.07620 1.67791 1.21139 0.91354 0.83241 0.81125 1.90570 1.71551 1.33046 1.55096 1.21643 0.89148 0.91473 1.04442 1.59908 1.08141 1.12225 1.52384 1.22571 0.87107 0.95188 1.03976 1.21893 0.91066 0.93548 0.88207 0.89520 1.86759 1.75658 1.59176 1.16173 1.23950 0.95840 0.80136 1.05219 1.86476 1.18563 1.31241 1.84997 1.19125 0.85000 0.91871 0.90909 1.21811 0.94189 0.98511 1.08605 1.22039 0.94565 0.98913 0.86993 1.21633 1.01825 0.90720 1.02344 1.21294 0.87877 1.03773 0.92027 1.21013 0.91058 0.83085 1.25018 1.43911 1.02057 1.02614 0.96813 1.94451 1.82036 1.09453 1.54343 1.94663 0.99061 1.92013 1.54734 0.91141 0.77299 0.86286 0.89842 0.83394 0.91470 0.87556 0.76598 0.87674 0.87447 0.80183 0.79297 0.79872 0.81958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.79 13.96 21.66 0.30 -56.49 16 2 C -0.02 -1.02 5.50 84.93 0.47 -0.55 16 3 Si 0.97 38.02 27.74 68.60 1.90 39.92 16 4 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.23 -7.31 6.52 99.48 0.65 -6.66 16 7 C -0.33 -19.60 10.16 84.04 0.85 -18.75 16 8 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 9 N -0.59 -27.49 5.09 -307.00 -1.56 -29.06 16 10 C 0.44 19.95 7.82 87.66 0.69 20.64 16 11 O -0.62 -35.30 15.78 -3.05 -0.05 -35.35 16 12 C 0.06 1.82 6.17 85.56 0.53 2.35 16 13 N -0.69 -19.46 6.13 -517.91 -3.17 -22.64 16 14 C 0.04 0.62 5.36 86.31 0.46 1.09 16 15 C 0.11 2.06 3.49 30.60 0.11 2.17 16 16 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 17 O -0.57 -13.04 12.83 -144.34 -1.85 -14.89 16 18 C 0.02 0.25 4.37 71.98 0.31 0.57 16 19 O -0.30 -6.11 8.11 -67.60 -0.55 -6.66 16 20 C 0.18 2.86 6.67 22.50 0.15 3.01 16 21 C -0.21 -1.14 9.04 22.36 0.20 -0.94 16 22 C -0.01 0.00 10.04 22.25 0.22 0.22 16 23 C -0.15 -0.39 10.04 22.28 0.22 -0.17 16 24 C -0.03 -0.34 9.55 22.26 0.21 -0.13 16 25 C -0.12 -2.27 6.87 36.47 0.25 -2.02 16 26 N 0.04 1.08 4.45 -46.24 -0.21 0.88 16 27 O -0.19 -5.57 18.45 18.88 0.35 -5.22 16 28 O -0.20 -6.83 17.24 25.61 0.44 -6.39 16 29 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 30 H 0.39 14.68 5.76 -92.71 -0.53 14.15 16 31 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.35 11.32 7.99 -89.70 -0.72 10.60 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.39 5.12 9.05 -74.06 -0.67 4.45 16 37 H 0.11 0.42 7.65 -2.38 -0.02 0.40 16 38 H 0.11 0.55 7.68 -2.39 -0.02 0.53 16 39 H 0.18 -0.18 6.30 -2.91 -0.02 -0.20 16 40 H 0.19 -1.46 8.06 -2.91 -0.02 -1.48 16 41 H 0.18 -0.80 8.06 -2.91 -0.02 -0.82 16 42 H 0.16 1.50 7.61 -2.91 -0.02 1.48 16 Total: -1.00 -97.60 370.13 -0.58 -98.18 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.87 Total: 30.22 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 4.68 Total: 7.49 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -4.64 Total: -107.31 kcal Atomic # 8 Polarization: -66.85 SS G_CDS: -1.66 Total: -68.51 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.90 Total: 39.92 kcal Total: -97.60 -0.58 -98.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563012365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.667 kcal (2) G-P(sol) polarization free energy of solvation -97.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds