Wall clock time and date at job start Tue Mar 31 2020 22:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48498 * 109.46905 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46792 * 299.99705 * 3 2 1 6 6 H 1.48495 * 109.47235 * 59.99900 * 3 2 1 7 7 C 1.38955 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00475 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99872 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00324 * 359.97438 * 10 9 7 12 12 C 1.50709 * 120.00278 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47358 * 180.02562 * 12 10 9 14 14 C 1.46890 * 110.99812 * 180.02562 * 13 12 10 15 15 C 1.53009 * 109.47140 * 179.97438 * 14 13 12 16 16 H 1.09001 * 109.46642 * 304.99907 * 15 14 13 17 17 O 1.42900 * 109.46870 * 64.99718 * 15 14 13 18 18 C 1.52999 * 109.46984 * 185.00047 * 15 14 13 19 19 O 1.42905 * 109.46728 * 175.00138 * 18 15 14 20 20 C 1.35896 * 117.00039 * 179.97438 * 19 18 15 21 21 C 1.38761 * 120.05442 * 359.72132 * 20 19 18 22 22 C 1.38120 * 119.94470 * 179.79514 * 21 20 19 23 23 C 1.38291 * 120.05431 * 0.48112 * 22 21 20 24 24 C 1.38239 * 120.11205 * 359.75006 * 23 22 21 25 25 N 1.48002 * 119.97536 * 180.02562 * 24 23 22 26 26 O 1.21799 * 120.00271 * 180.02562 * 25 24 23 27 27 O 1.21806 * 119.99612 * 0.02562 * 25 24 23 28 28 C 1.38172 * 120.05476 * 0.02562 * 24 23 22 29 29 H 0.96994 * 119.99460 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99911 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46608 * 60.00071 * 12 10 9 32 32 H 1.08994 * 109.46714 * 300.00587 * 12 10 9 33 33 H 1.00903 * 110.99991 * 303.95821 * 13 12 10 34 34 H 1.09003 * 109.47675 * 60.00153 * 14 13 12 35 35 H 1.08996 * 109.47404 * 299.99758 * 14 13 12 36 36 H 0.96702 * 113.99716 * 60.00481 * 17 15 14 37 37 H 1.09000 * 109.47486 * 55.00077 * 18 15 14 38 38 H 1.09001 * 109.47362 * 294.99354 * 18 15 14 39 39 H 1.07995 * 120.02661 * 0.02562 * 21 20 19 40 40 H 1.08004 * 119.97385 * 180.23150 * 22 21 20 41 41 H 1.08001 * 119.94687 * 179.77366 * 23 22 21 42 42 H 1.08004 * 120.02618 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5580 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1982 -5.9796 0.0016 14 6 1.4979 -7.2708 0.0016 15 6 2.5228 -8.4069 0.0015 16 1 3.2038 -8.2818 -0.8404 17 8 3.2647 -8.3792 1.2225 18 6 1.7974 -9.7481 -0.1243 19 8 2.7578 -10.7999 -0.2415 20 6 2.2759 -12.0648 -0.3620 21 6 0.9066 -12.2898 -0.3616 22 6 0.4192 -13.5759 -0.4885 23 6 1.2948 -14.6399 -0.6059 24 6 2.6594 -14.4189 -0.6018 25 7 3.5936 -15.5598 -0.7283 26 8 4.7960 -15.3657 -0.7242 27 8 3.1600 -16.6929 -0.8363 28 6 3.1519 -13.1337 -0.4798 29 1 -0.4849 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6167 -4.9209 -0.8887 32 1 0.6173 -4.9205 0.8913 33 1 2.8332 -5.9129 -0.7798 34 1 0.8733 -7.3455 -0.8886 35 1 0.8728 -7.3452 0.8913 36 1 2.7213 -8.4852 2.0153 37 1 1.1620 -9.7360 -1.0099 38 1 1.1836 -9.9137 0.7611 39 1 0.2226 -11.4596 -0.2658 40 1 -0.6465 -13.7512 -0.4919 41 1 0.9118 -15.6452 -0.7014 42 1 4.2181 -12.9616 -0.4762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567494464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:34 Heat of formation + Delta-G solvation = -121.012860 kcal Electronic energy + Delta-G solvation = -27280.985816 eV Core-core repulsion = 22842.995424 eV Total energy + Delta-G solvation = -4437.990392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.33387 -41.46740 -40.19418 -39.32421 -38.08576 -37.75188 -36.25700 -35.61167 -33.27818 -33.02866 -32.27934 -31.05718 -28.75181 -27.77481 -26.62609 -24.83002 -24.09226 -23.18423 -22.57763 -21.08152 -20.68085 -19.92384 -19.83383 -18.69188 -18.40463 -18.11790 -17.70563 -17.58961 -17.26804 -16.94063 -16.52461 -16.38952 -16.01320 -15.74845 -15.35477 -15.18106 -15.02369 -14.43821 -14.43015 -14.04397 -13.83993 -13.47758 -13.36652 -13.18962 -12.99561 -12.88699 -12.71942 -12.67177 -12.41535 -12.37883 -12.32704 -12.21210 -12.12522 -11.83376 -11.52231 -11.06474 -10.69353 -10.34409 -10.01830 -9.67170 -9.29294 -8.47946 -5.96296 -1.34706 -0.04070 0.22270 0.24516 1.36019 1.41891 1.55596 1.80825 2.05268 2.23415 2.29196 2.91810 3.19728 3.37715 3.41995 3.53949 3.57219 3.65921 3.73517 3.83556 3.96144 4.01327 4.03995 4.26159 4.30368 4.40044 4.42065 4.49881 4.57177 4.66708 4.69600 4.86734 4.94937 4.98768 5.02777 5.31604 5.40689 5.86280 6.06518 6.11993 6.34034 6.38610 6.59898 6.91631 7.12605 7.56085 8.12217 8.69515 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.040587 B = 0.001416 C = 0.001380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.703635 B =19775.485426 C =20290.529750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.991 3.009 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.076 0.924 9 N -0.573 5.573 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.068 3.932 13 N -0.682 5.682 14 C 0.036 3.964 15 C 0.114 3.886 16 H 0.090 0.910 17 O -0.566 6.566 18 C 0.027 3.973 19 O -0.318 6.318 20 C 0.130 3.870 21 C -0.145 4.145 22 C -0.061 4.061 23 C -0.094 4.094 24 C -0.024 4.024 25 N 0.028 4.972 26 O -0.201 6.201 27 O -0.153 6.153 28 C -0.115 4.115 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.342 0.658 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.386 0.614 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.182 0.818 40 H 0.194 0.806 41 H 0.169 0.831 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.565 -27.879 -1.133 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.094 0.906 9 N -0.210 5.210 10 C 0.221 3.779 11 O -0.513 6.513 12 C -0.064 4.064 13 N -0.315 5.315 14 C -0.093 4.093 15 C 0.055 3.945 16 H 0.108 0.892 17 O -0.373 6.373 18 C -0.048 4.048 19 O -0.231 6.231 20 C 0.083 3.917 21 C -0.163 4.163 22 C -0.079 4.079 23 C -0.113 4.113 24 C -0.106 4.106 25 N 0.544 4.456 26 O -0.408 6.408 27 O -0.374 6.374 28 C -0.135 4.135 29 H 0.087 0.913 30 H 0.232 0.768 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.161 0.839 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.235 0.765 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.199 0.801 40 H 0.211 0.789 41 H 0.187 0.813 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.506 -26.965 -0.787 28.286 hybrid contribution -0.180 0.575 -0.616 0.862 sum -8.686 -26.390 -1.403 27.818 Atomic orbital electron populations 1.69662 1.06710 1.29228 1.50348 1.25988 0.96536 1.02255 0.96246 0.84900 0.77989 0.77258 0.78371 1.20033 1.19517 1.19586 1.19692 0.92665 0.84185 1.49957 0.90572 1.41923 1.09342 1.04660 1.65084 1.21022 0.88289 0.86400 0.82146 1.90514 1.16151 1.88006 1.56609 1.21536 0.93772 0.87666 1.03447 1.59915 1.18972 1.00848 1.51753 1.22623 0.95441 0.87562 1.03677 1.21846 0.93634 0.90500 0.88569 0.89244 1.86691 1.38694 1.95854 1.16038 1.23858 0.91176 0.84764 1.05003 1.86182 1.37177 1.12609 1.87170 1.18709 0.92290 0.84439 0.96228 1.22219 0.93345 1.00821 0.99938 1.21511 1.02166 0.89476 0.94736 1.21377 0.88610 1.03746 0.97554 1.20879 0.90257 0.85055 1.14457 1.43936 1.01915 1.02770 0.96992 1.94575 0.98809 1.91712 1.55749 1.94498 1.81933 1.08804 1.52127 1.20087 1.02229 0.88907 1.02282 0.91277 0.76847 0.91053 0.87356 0.83934 0.91631 0.88233 0.76510 0.87806 0.88055 0.80073 0.78917 0.81309 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.36 13.05 21.66 0.28 -48.08 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 3 Si 0.99 42.42 29.55 68.60 2.03 44.45 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.34 -18.86 9.68 84.04 0.81 -18.04 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 N -0.57 -28.55 5.29 -306.98 -1.62 -30.17 16 10 C 0.43 19.98 7.82 87.66 0.69 20.66 16 11 O -0.63 -34.64 15.78 -3.07 -0.05 -34.69 16 12 C 0.07 2.06 6.17 85.56 0.53 2.59 16 13 N -0.68 -18.98 6.07 -517.93 -3.15 -22.13 16 14 C 0.04 0.54 5.32 86.31 0.46 1.00 16 15 C 0.11 1.78 3.43 30.60 0.10 1.89 16 16 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 17 O -0.57 -12.15 13.25 -144.34 -1.91 -14.07 16 18 C 0.03 0.22 4.38 71.98 0.31 0.53 16 19 O -0.32 -4.80 10.10 -87.75 -0.89 -5.69 16 20 C 0.13 1.63 6.69 22.51 0.15 1.78 16 21 C -0.14 -0.69 9.04 22.37 0.20 -0.48 16 22 C -0.06 -0.18 10.04 22.25 0.22 0.04 16 23 C -0.09 -0.83 9.55 22.28 0.21 -0.62 16 24 C -0.02 -0.39 6.85 36.36 0.25 -0.14 16 25 N 0.03 0.63 4.45 -46.51 -0.21 0.43 16 26 O -0.20 -5.26 18.45 18.89 0.35 -4.91 16 27 O -0.15 -3.40 18.44 18.88 0.35 -3.05 16 28 C -0.12 -1.93 9.49 22.36 0.21 -1.72 16 29 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 30 H 0.40 18.51 7.90 -92.71 -0.73 17.78 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.34 10.59 8.43 -89.69 -0.76 9.84 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.39 5.21 9.05 -74.06 -0.67 4.54 16 37 H 0.10 0.29 7.68 -2.39 -0.02 0.27 16 38 H 0.10 0.26 7.65 -2.39 -0.02 0.24 16 39 H 0.18 -0.37 6.30 -2.91 -0.02 -0.39 16 40 H 0.19 -0.96 8.06 -2.91 -0.02 -0.98 16 41 H 0.17 0.98 7.60 -2.91 -0.02 0.96 16 42 H 0.14 2.78 7.61 -2.91 -0.02 2.76 16 Total: -1.00 -80.70 376.16 -1.24 -81.94 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -1.05 Total: 28.55 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 4.62 Total: 7.42 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -4.69 Total: -99.95 kcal Atomic # 8 Polarization: -60.25 SS G_CDS: -2.15 Total: -62.40 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -80.70 -1.24 -81.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567494464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.071 kcal (2) G-P(sol) polarization free energy of solvation -80.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds