Wall clock time and date at job start Tue Mar 31 2020 22:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00064 * 2 1 4 4 H 1.48495 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46698 * 300.00528 * 3 2 1 6 6 H 1.48500 * 109.46974 * 60.00052 * 3 2 1 7 7 C 1.38954 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99909 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00193 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99807 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99855 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46800 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 17 17 O 1.42905 * 109.47264 * 299.99921 * 15 14 13 18 18 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 19 19 O 1.42905 * 109.47641 * 184.99974 * 18 15 14 20 20 C 1.35901 * 117.00161 * 180.02562 * 19 18 15 21 21 C 1.38754 * 120.05637 * 359.71604 * 20 19 18 22 22 C 1.38121 * 119.94473 * 179.79321 * 21 20 19 23 23 C 1.38291 * 120.05195 * 0.49089 * 22 21 20 24 24 C 1.38234 * 120.11338 * 359.74642 * 23 22 21 25 25 N 1.48008 * 119.97157 * 180.02562 * 24 23 22 26 26 O 1.21806 * 119.99537 * 180.02562 * 25 24 23 27 27 O 1.21797 * 120.00360 * 0.02562 * 25 24 23 28 28 C 1.38177 * 120.05869 * 0.02562 * 24 23 22 29 29 H 0.96998 * 120.00361 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00240 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47455 * 60.00021 * 12 10 9 32 32 H 1.09003 * 109.47449 * 299.99253 * 12 10 9 33 33 H 1.00902 * 111.00190 * 56.03702 * 13 12 10 34 34 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 35 35 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 36 36 H 0.96696 * 114.00036 * 299.99911 * 17 15 14 37 37 H 1.09001 * 109.47563 * 305.00337 * 18 15 14 38 38 H 1.09004 * 109.47313 * 64.99993 * 18 15 14 39 39 H 1.08008 * 120.02757 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.97541 * 180.23950 * 22 21 20 41 41 H 1.08007 * 119.94192 * 179.76343 * 23 22 21 42 42 H 1.07990 * 120.03000 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0004 14 6 1.4983 -7.2708 -0.0015 15 6 2.5232 -8.4068 -0.0014 16 1 3.1475 -8.3328 0.8890 17 8 3.3433 -8.3086 -1.1675 18 6 1.7939 -9.7517 -0.0019 19 8 2.7466 -10.8103 0.1156 20 6 2.2603 -12.0793 0.1302 21 6 0.8936 -12.3008 0.0392 22 6 0.4022 -13.5916 0.0498 23 6 1.2704 -14.6623 0.1613 24 6 2.6320 -14.4440 0.2571 25 7 3.5584 -15.5922 0.3757 26 8 4.7582 -15.4004 0.4606 27 8 3.1210 -16.7289 0.3885 28 6 3.1290 -13.1548 0.2421 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6176 -4.9205 -0.8913 32 1 0.6169 -4.9209 0.8887 33 1 2.8329 -5.9123 0.7814 34 1 0.8724 -7.3455 0.8878 35 1 0.8743 -7.3450 -0.8922 36 1 2.8532 -8.3667 -1.9991 37 1 1.1022 -9.7904 0.8396 38 1 1.2393 -9.8639 -0.9336 39 1 0.2149 -11.4647 -0.0437 40 1 -0.6612 -13.7648 -0.0249 41 1 0.8839 -15.6707 0.1734 42 1 4.1928 -12.9848 0.3174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567494465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:38 Heat of formation + Delta-G solvation = -92.668752 kcal Electronic energy + Delta-G solvation = -27284.696518 eV Core-core repulsion = 22847.935219 eV Total energy + Delta-G solvation = -4436.761299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.59869 -40.96934 -38.88661 -38.29571 -37.33454 -36.95272 -34.93254 -33.85225 -32.55915 -31.70235 -31.27560 -30.35708 -27.69721 -26.99060 -25.16907 -23.69168 -23.57501 -22.48956 -21.91059 -20.09104 -19.33598 -19.07478 -17.97388 -17.93839 -17.69272 -17.48640 -17.16053 -16.81791 -16.33267 -15.76722 -15.65594 -15.00188 -14.87349 -14.76277 -14.49254 -14.00378 -13.82436 -13.56878 -13.51233 -13.06251 -12.97071 -12.63747 -12.30467 -11.98830 -11.93664 -11.80388 -11.65011 -11.59938 -11.55401 -11.51916 -11.18452 -11.09607 -10.37659 -10.34349 -10.27042 -10.25984 -9.56884 -9.20605 -8.54894 -8.18157 -8.01528 -6.46808 -3.87617 -0.68869 0.38135 0.85695 0.87636 2.31215 2.66916 3.13087 3.24190 3.31633 3.74966 3.81886 3.85469 3.98701 4.05469 4.11104 4.14613 4.18786 4.34278 4.40389 4.52954 4.65944 4.73144 4.86038 4.89336 5.10596 5.11523 5.20342 5.26278 5.28931 5.32685 5.44665 5.63082 5.67562 5.84544 5.94174 6.17143 6.51840 7.01120 7.21641 7.42131 7.51066 7.54744 8.01252 8.55680 9.13147 9.48439 9.99751 10.70942 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.041686 B = 0.001414 C = 0.001377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.532739 B =19791.122686 C =20326.543951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.580 6.580 12 C 0.051 3.949 13 N -0.657 5.657 14 C 0.031 3.969 15 C 0.115 3.885 16 H 0.110 0.890 17 O -0.533 6.533 18 C 0.024 3.976 19 O -0.291 6.291 20 C 0.141 3.859 21 C -0.162 4.162 22 C -0.074 4.074 23 C -0.098 4.098 24 C -0.005 4.005 25 N 0.027 4.973 26 O -0.152 6.152 27 O -0.155 6.155 28 C -0.093 4.093 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.353 0.647 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.373 0.627 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.812 -27.509 0.445 28.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.224 3.776 11 O -0.464 6.464 12 C -0.081 4.081 13 N -0.290 5.290 14 C -0.099 4.099 15 C 0.054 3.946 16 H 0.128 0.872 17 O -0.337 6.337 18 C -0.052 4.052 19 O -0.203 6.203 20 C 0.093 3.907 21 C -0.181 4.181 22 C -0.093 4.093 23 C -0.117 4.117 24 C -0.087 4.087 25 N 0.547 4.453 26 O -0.369 6.369 27 O -0.372 6.372 28 C -0.113 4.113 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.173 0.827 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.220 0.780 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.803 -26.619 0.168 27.049 hybrid contribution -1.222 0.524 0.552 1.440 sum -6.025 -26.094 0.720 26.790 Atomic orbital electron populations 1.69612 1.05963 1.28103 1.50665 1.25265 0.95637 0.99755 0.97247 0.85794 0.79765 0.81046 0.77719 1.19162 1.20714 1.20756 1.19771 0.93453 0.82189 1.47503 0.87804 1.41862 1.09168 1.04609 1.64378 1.19756 0.88410 0.84662 0.84722 1.90546 1.13685 1.86965 1.55176 1.21692 0.94241 0.91054 1.01157 1.59899 1.18391 0.98968 1.51779 1.22528 0.95429 0.90471 1.01488 1.21871 0.92737 0.88483 0.91483 0.87227 1.86725 1.36189 1.95736 1.15013 1.23833 0.91998 0.86921 1.02424 1.86229 1.35873 1.11142 1.87064 1.18637 0.91257 0.85218 0.95540 1.21800 0.94413 0.99324 1.02551 1.21007 1.00598 0.90607 0.97096 1.20989 0.89881 1.02116 0.98744 1.20729 0.90014 0.85874 1.12101 1.43555 1.01717 1.02235 0.97743 1.94583 0.97774 1.91856 1.52714 1.94545 1.81635 1.07524 1.53455 1.20116 1.02517 0.87982 1.00640 0.91906 0.77504 0.89590 0.93875 0.82697 0.94344 0.90404 0.77996 0.90528 0.90894 0.83442 0.83099 0.82759 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -13.93 5.29 -10.97 -0.06 -13.98 16 10 C 0.44 10.07 7.82 -10.99 -0.09 9.98 16 11 O -0.58 -15.58 15.78 5.55 0.09 -15.49 16 12 C 0.05 0.83 6.17 -4.98 -0.03 0.80 16 13 N -0.66 -9.62 5.99 -115.06 -0.69 -10.31 16 14 C 0.03 0.29 5.35 -3.83 -0.02 0.27 16 15 C 0.11 0.99 3.45 -26.74 -0.09 0.90 16 16 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 17 O -0.53 -5.96 13.17 -40.06 -0.53 -6.49 16 18 C 0.02 0.14 4.38 37.15 0.16 0.30 16 19 O -0.29 -2.39 10.10 -24.25 -0.24 -2.64 16 20 C 0.14 1.00 6.69 -39.22 -0.26 0.74 16 21 C -0.16 -0.75 9.04 -39.43 -0.36 -1.10 16 22 C -0.07 -0.29 10.04 -39.60 -0.40 -0.68 16 23 C -0.10 -0.56 9.55 -39.56 -0.38 -0.94 16 24 C 0.00 -0.04 6.85 -79.98 -0.55 -0.58 16 25 N 0.03 0.28 4.45 33.95 0.15 0.43 16 26 O -0.15 -1.78 18.45 -29.46 -0.54 -2.33 16 27 O -0.16 -1.69 18.44 -29.46 -0.54 -2.23 16 28 C -0.09 -0.75 9.49 -39.43 -0.37 -1.13 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.39 9.18 7.90 -40.82 -0.32 8.85 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.35 5.52 8.43 -39.29 -0.33 5.19 16 34 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.37 2.89 9.05 45.56 0.41 3.30 16 37 H 0.08 0.30 7.65 -51.93 -0.40 -0.10 16 38 H 0.07 0.28 7.67 -51.93 -0.40 -0.12 16 39 H 0.15 0.34 6.30 -52.48 -0.33 0.01 16 40 H 0.15 0.13 8.06 -52.49 -0.42 -0.29 16 41 H 0.15 0.67 7.61 -52.48 -0.40 0.27 16 42 H 0.16 1.33 7.61 -52.49 -0.40 0.93 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -34.74 376.05 -7.84 -42.58 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.21 Total: 11.74 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -2.62 Total: 0.66 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.13 Total: -47.21 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -1.77 Total: -29.18 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.74 -7.84 -42.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567494465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.087 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds