Wall clock time and date at job start Tue Mar 31 2020 22:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00064 * 2 1 4 4 H 1.48495 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46698 * 300.00528 * 3 2 1 6 6 H 1.48500 * 109.46974 * 60.00052 * 3 2 1 7 7 C 1.38954 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99909 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00193 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99807 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99855 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46800 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 17 17 O 1.42905 * 109.47264 * 299.99921 * 15 14 13 18 18 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 19 19 O 1.42905 * 109.47641 * 184.99974 * 18 15 14 20 20 C 1.35901 * 117.00161 * 180.02562 * 19 18 15 21 21 C 1.38754 * 120.05637 * 359.71604 * 20 19 18 22 22 C 1.38121 * 119.94473 * 179.79321 * 21 20 19 23 23 C 1.38291 * 120.05195 * 0.49089 * 22 21 20 24 24 C 1.38234 * 120.11338 * 359.74642 * 23 22 21 25 25 N 1.48008 * 119.97157 * 180.02562 * 24 23 22 26 26 O 1.21806 * 119.99537 * 180.02562 * 25 24 23 27 27 O 1.21797 * 120.00360 * 0.02562 * 25 24 23 28 28 C 1.38177 * 120.05869 * 0.02562 * 24 23 22 29 29 H 0.96998 * 120.00361 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00240 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47455 * 60.00021 * 12 10 9 32 32 H 1.09003 * 109.47449 * 299.99253 * 12 10 9 33 33 H 1.00902 * 111.00190 * 56.03702 * 13 12 10 34 34 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 35 35 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 36 36 H 0.96696 * 114.00036 * 299.99911 * 17 15 14 37 37 H 1.09001 * 109.47563 * 305.00337 * 18 15 14 38 38 H 1.09004 * 109.47313 * 64.99993 * 18 15 14 39 39 H 1.08008 * 120.02757 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.97541 * 180.23950 * 22 21 20 41 41 H 1.08007 * 119.94192 * 179.76343 * 23 22 21 42 42 H 1.07990 * 120.03000 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0004 14 6 1.4983 -7.2708 -0.0015 15 6 2.5232 -8.4068 -0.0014 16 1 3.1475 -8.3328 0.8890 17 8 3.3433 -8.3086 -1.1675 18 6 1.7939 -9.7517 -0.0019 19 8 2.7466 -10.8103 0.1156 20 6 2.2603 -12.0793 0.1302 21 6 0.8936 -12.3008 0.0392 22 6 0.4022 -13.5916 0.0498 23 6 1.2704 -14.6623 0.1613 24 6 2.6320 -14.4440 0.2571 25 7 3.5584 -15.5922 0.3757 26 8 4.7582 -15.4004 0.4606 27 8 3.1210 -16.7289 0.3885 28 6 3.1290 -13.1548 0.2421 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6176 -4.9205 -0.8913 32 1 0.6169 -4.9209 0.8887 33 1 2.8329 -5.9123 0.7814 34 1 0.8724 -7.3455 0.8878 35 1 0.8743 -7.3450 -0.8922 36 1 2.8532 -8.3667 -1.9991 37 1 1.1022 -9.7904 0.8396 38 1 1.2393 -9.8639 -0.9336 39 1 0.2149 -11.4647 -0.0437 40 1 -0.6612 -13.7648 -0.0249 41 1 0.8839 -15.6707 0.1734 42 1 4.1928 -12.9848 0.3174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567494465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:38 Heat of formation + Delta-G solvation = -120.738791 kcal Electronic energy + Delta-G solvation = -27285.913726 eV Core-core repulsion = 22847.935219 eV Total energy + Delta-G solvation = -4437.978507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.33363 -41.46520 -40.19220 -39.31956 -38.08295 -37.75175 -36.24454 -35.59747 -33.27621 -33.02778 -32.28005 -31.05730 -28.75249 -27.77459 -26.62432 -24.82949 -24.09073 -23.17446 -22.56575 -21.07847 -20.67919 -19.92197 -19.83326 -18.69165 -18.39411 -18.11265 -17.72128 -17.58031 -17.26483 -16.93927 -16.52593 -16.38512 -16.01399 -15.74752 -15.35749 -15.17967 -15.00468 -14.43356 -14.42832 -14.03071 -13.84409 -13.47526 -13.36890 -13.19136 -13.00292 -12.88445 -12.72257 -12.66604 -12.41395 -12.37853 -12.32197 -12.20839 -12.12499 -11.81566 -11.52135 -11.05285 -10.69277 -10.34195 -10.01703 -9.67077 -9.28991 -8.47807 -5.96137 -1.34631 -0.04010 0.22330 0.24543 1.36050 1.41915 1.55633 1.80915 2.05445 2.23488 2.29256 2.91754 3.19859 3.37921 3.42196 3.54612 3.57301 3.66385 3.74152 3.83426 3.96145 4.01749 4.04331 4.26230 4.31423 4.39590 4.42155 4.50460 4.57357 4.66756 4.70151 4.86803 4.95048 4.98853 5.02777 5.31647 5.40777 5.86393 6.06578 6.12269 6.34246 6.38668 6.60083 6.91908 7.12775 7.56260 8.12436 8.69647 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.041686 B = 0.001414 C = 0.001377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.532739 B =19791.122686 C =20326.543951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.991 3.009 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.076 0.924 9 N -0.573 5.573 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.068 3.932 13 N -0.681 5.681 14 C 0.035 3.965 15 C 0.114 3.886 16 H 0.090 0.910 17 O -0.565 6.565 18 C 0.027 3.973 19 O -0.318 6.318 20 C 0.130 3.870 21 C -0.145 4.145 22 C -0.061 4.061 23 C -0.094 4.094 24 C -0.024 4.024 25 N 0.028 4.972 26 O -0.201 6.201 27 O -0.153 6.153 28 C -0.115 4.115 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.342 0.658 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.385 0.615 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.182 0.818 40 H 0.194 0.806 41 H 0.169 0.831 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.524 -27.861 0.224 29.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.094 0.906 9 N -0.210 5.210 10 C 0.222 3.778 11 O -0.512 6.512 12 C -0.064 4.064 13 N -0.314 5.314 14 C -0.094 4.094 15 C 0.054 3.946 16 H 0.108 0.892 17 O -0.372 6.372 18 C -0.048 4.048 19 O -0.231 6.231 20 C 0.083 3.917 21 C -0.163 4.163 22 C -0.079 4.079 23 C -0.113 4.113 24 C -0.106 4.106 25 N 0.544 4.456 26 O -0.409 6.409 27 O -0.373 6.373 28 C -0.135 4.135 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.127 0.873 32 H 0.089 0.911 33 H 0.161 0.839 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.234 0.766 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.199 0.801 40 H 0.211 0.789 41 H 0.187 0.813 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.488 -26.970 -0.057 28.274 hybrid contribution -0.170 0.589 0.608 0.864 sum -8.658 -26.380 0.551 27.770 Atomic orbital electron populations 1.69658 1.06710 1.29230 1.50359 1.25985 0.96532 1.02251 0.96255 0.84903 0.77994 0.77268 0.78368 1.20029 1.19583 1.19530 1.19688 0.92664 0.84187 1.49945 0.90573 1.41924 1.09338 1.04662 1.65104 1.21020 0.88288 0.86396 0.82141 1.90514 1.16147 1.88002 1.56585 1.21535 0.93769 0.87681 1.03435 1.59887 1.18950 1.00792 1.51734 1.22615 0.95457 0.87606 1.03675 1.21850 0.92404 0.90343 0.89990 0.89177 1.86685 1.38054 1.96036 1.16404 1.23852 0.91365 0.84548 1.05027 1.86182 1.37484 1.11967 1.87499 1.18709 0.92278 0.84354 0.96320 1.22220 0.93329 1.00856 0.99926 1.21510 1.02154 0.89410 0.94815 1.21377 0.88682 1.03792 0.97445 1.20881 0.90481 0.84759 1.14527 1.43937 1.01869 1.02829 0.96978 1.94577 0.98998 1.92098 1.55185 1.94496 1.81472 1.08610 1.52771 1.20087 1.02236 0.88791 1.02385 0.91278 0.76855 0.87313 0.91127 0.83947 0.91711 0.88225 0.76562 0.87758 0.88149 0.80076 0.78923 0.81308 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.37 13.05 21.66 0.28 -48.09 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 3 Si 0.99 42.42 29.55 68.60 2.03 44.45 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.34 -18.84 9.68 84.04 0.81 -18.03 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 N -0.57 -28.55 5.29 -306.99 -1.62 -30.17 16 10 C 0.43 19.97 7.82 87.65 0.69 20.65 16 11 O -0.63 -34.61 15.78 -3.06 -0.05 -34.65 16 12 C 0.07 2.06 6.17 85.55 0.53 2.59 16 13 N -0.68 -18.90 5.99 -517.93 -3.10 -22.00 16 14 C 0.04 0.54 5.35 86.30 0.46 1.00 16 15 C 0.11 1.77 3.45 30.59 0.11 1.87 16 16 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 17 O -0.57 -12.29 13.17 -144.37 -1.90 -14.19 16 18 C 0.03 0.22 4.38 71.98 0.31 0.53 16 19 O -0.32 -4.80 10.10 -87.82 -0.89 -5.68 16 20 C 0.13 1.63 6.69 22.50 0.15 1.78 16 21 C -0.14 -0.69 9.04 22.37 0.20 -0.49 16 22 C -0.06 -0.18 10.04 22.25 0.22 0.04 16 23 C -0.09 -0.83 9.55 22.28 0.21 -0.62 16 24 C -0.02 -0.39 6.85 36.36 0.25 -0.14 16 25 N 0.03 0.63 4.45 -46.51 -0.21 0.43 16 26 O -0.20 -5.27 18.45 18.88 0.35 -4.92 16 27 O -0.15 -3.39 18.44 18.89 0.35 -3.04 16 28 C -0.12 -1.93 9.49 22.37 0.21 -1.72 16 29 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 30 H 0.40 18.51 7.90 -92.71 -0.73 17.78 16 31 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.34 10.64 8.43 -89.69 -0.76 9.88 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.39 5.48 9.05 -74.06 -0.67 4.81 16 37 H 0.10 0.28 7.65 -2.39 -0.02 0.26 16 38 H 0.10 0.28 7.67 -2.39 -0.02 0.26 16 39 H 0.18 -0.36 6.30 -2.91 -0.02 -0.38 16 40 H 0.19 -0.95 8.06 -2.91 -0.02 -0.98 16 41 H 0.17 0.98 7.61 -2.91 -0.02 0.96 16 42 H 0.14 2.78 7.61 -2.92 -0.02 2.76 16 Total: -1.00 -80.47 376.05 -1.19 -81.66 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -1.05 Total: 28.82 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 4.63 Total: 7.40 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -4.65 Total: -99.84 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -2.14 Total: -62.49 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -80.47 -1.19 -81.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567494465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.081 kcal (2) G-P(sol) polarization free energy of solvation -80.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds