Wall clock time and date at job start Tue Mar 31 2020 22:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39766 * 125.84207 * 2 1 4 4 C 1.36168 * 107.81738 * 180.16398 * 3 2 1 5 5 N 1.39206 * 126.22258 * 179.84148 * 4 3 2 6 6 S 1.65598 * 120.00298 * 1.25337 * 5 4 3 7 7 O 1.42106 * 106.40007 * 310.20771 * 6 5 4 8 8 O 1.42094 * 106.40332 * 177.28551 * 6 5 4 9 9 C 1.76198 * 107.21868 * 63.74197 * 6 5 4 10 10 C 1.39869 * 126.04075 * 244.55003 * 9 6 5 11 11 N 1.30841 * 108.20007 * 179.81989 * 10 9 6 12 12 N 1.40083 * 108.20955 * 0.43442 * 11 10 9 13 13 C 1.46494 * 126.03961 * 179.74141 * 12 11 10 14 14 C 1.34948 * 107.92177 * 359.72286 * 12 11 10 15 15 C 1.50699 * 126.12706 * 179.97438 * 14 12 11 16 16 N 1.35251 * 107.55849 * 359.58030 * 4 3 2 17 17 C 1.46496 * 126.04671 * 180.26639 * 16 4 3 18 18 C 1.50693 * 109.47252 * 89.99887 * 17 16 4 19 19 H 1.08005 * 120.00116 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00134 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99816 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00371 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46699 * 60.00029 * 22 20 18 24 24 H 1.48499 * 109.47238 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47205 * 300.00276 * 22 20 18 26 26 N 1.30839 * 125.83326 * 179.69012 * 2 1 3 27 27 H 1.08998 * 109.46913 * 270.28069 * 1 2 3 28 28 H 1.09001 * 109.47022 * 30.27840 * 1 2 3 29 29 H 1.08997 * 109.46885 * 150.28143 * 1 2 3 30 30 H 1.08000 * 126.09045 * 0.02562 * 3 2 1 31 31 H 0.97007 * 120.00077 * 181.24706 * 5 4 3 32 32 H 1.07995 * 125.90168 * 359.97438 * 10 9 6 33 33 H 1.09006 * 109.47273 * 269.97770 * 13 12 11 34 34 H 1.09000 * 109.47376 * 29.97664 * 13 12 11 35 35 H 1.09000 * 109.47370 * 149.97775 * 13 12 11 36 36 H 1.09007 * 109.46808 * 265.44556 * 15 14 12 37 37 H 1.08998 * 109.47039 * 25.43884 * 15 14 12 38 38 H 1.09000 * 109.47405 * 145.44254 * 15 14 12 39 39 H 1.09002 * 109.47211 * 209.99764 * 17 16 4 40 40 H 1.08998 * 109.46938 * 329.99501 * 17 16 4 41 41 H 0.96996 * 120.00156 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6203 0.7117 -0.0037 5 7 4.7500 1.5250 -0.0081 6 16 4.5844 3.1724 0.0222 7 8 3.6521 3.5008 -0.9988 8 8 5.8998 3.7070 0.0748 9 6 3.8155 3.5913 1.5513 10 6 2.5529 4.1730 1.7054 11 7 2.3281 4.3287 2.9849 12 7 3.4463 3.8594 3.6861 13 6 3.6111 3.8545 5.1417 14 6 4.3447 3.4123 2.7839 15 6 5.6955 2.8203 3.0934 16 7 3.6093 -0.6408 0.0035 17 6 4.7867 -1.5124 0.0082 18 6 5.1904 -1.8037 1.4305 19 1 4.6266 -1.3814 2.2492 20 6 6.2802 -2.6085 1.6868 21 7 6.9678 -3.1215 0.6899 22 14 6.7811 -2.9690 3.4499 23 1 5.6621 -3.6455 4.1538 24 1 7.9746 -3.8526 3.4546 25 1 7.1043 -1.6960 4.1429 26 7 2.2730 -1.0607 0.0057 27 1 -0.3633 0.0050 1.0276 28 1 -0.3633 0.8875 -0.5182 29 1 -0.3633 -0.8925 -0.5094 30 1 1.9905 2.1597 0.0004 31 1 5.6343 1.1268 -0.0288 32 1 1.8789 4.4444 0.9064 33 1 4.0733 4.7896 5.4583 34 1 2.6358 3.7520 5.6175 35 1 4.2469 3.0183 5.4326 36 1 6.4545 3.6011 3.0433 37 1 5.6827 2.3899 4.0947 38 1 5.9264 2.0419 2.3662 39 1 4.5493 -2.4467 -0.5006 40 1 5.6083 -1.0160 -0.5083 41 1 7.7343 -3.6879 0.8702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579546043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:26 Heat of formation + Delta-G solvation = 51.895090 kcal Electronic energy + Delta-G solvation = -28366.692839 eV Core-core repulsion = 24411.245921 eV Total energy + Delta-G solvation = -3955.446918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.48076 -42.14059 -38.43968 -37.08343 -36.49995 -35.69527 -34.65730 -33.81737 -33.32390 -30.70834 -29.57372 -28.44646 -27.82697 -27.74480 -24.73149 -23.08869 -22.27755 -21.67791 -21.18739 -20.09253 -18.86038 -18.65007 -18.42782 -18.15000 -16.92336 -16.77929 -16.66666 -16.38441 -16.04375 -15.91633 -15.38509 -14.64627 -14.45875 -14.40438 -14.21990 -14.05526 -13.82938 -13.76549 -13.58976 -13.56956 -13.39701 -13.35199 -13.25460 -13.16175 -13.04152 -12.95069 -12.68455 -12.66013 -12.43474 -12.24121 -11.79315 -11.72054 -11.34583 -10.73078 -10.47047 -10.28334 -9.67450 -9.15752 -8.33120 -6.50394 -0.81311 0.43125 1.11713 1.15826 1.35551 1.37735 1.41074 1.48578 1.57972 1.90628 2.07474 2.35211 2.62668 2.97789 3.15632 3.35649 3.52104 3.69078 3.82115 3.86139 4.21705 4.28176 4.32989 4.47446 4.51268 4.57397 4.59181 4.73160 4.76161 4.86916 4.88077 4.92086 4.94051 5.15468 5.29760 5.31786 5.52692 5.55390 5.75172 5.80266 5.94350 6.23936 6.33123 6.61075 7.00717 7.20866 8.73711 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.005330 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.042597 B = 5252.211522 C = 6181.665186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.074 3.926 3 C -0.331 4.331 4 C 0.334 3.666 5 N -1.029 6.029 6 S 2.748 3.252 7 O -0.961 6.961 8 O -0.964 6.964 9 C -0.830 4.830 10 C 0.137 3.863 11 N -0.310 5.310 12 N -0.359 5.359 13 C 0.077 3.923 14 C 0.213 3.787 15 C -0.131 4.131 16 N -0.361 5.361 17 C 0.269 3.731 18 C -0.551 4.551 19 H 0.055 0.945 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.967 3.033 23 H -0.278 1.278 24 H -0.278 1.278 25 H -0.255 1.255 26 N -0.332 5.332 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.166 0.834 31 H 0.432 0.568 32 H 0.218 0.782 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.026 0.974 40 H 0.046 0.954 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.168 14.714 7.592 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.091 4.091 3 C -0.365 4.365 4 C 0.108 3.892 5 N -0.779 5.779 6 S 2.838 3.162 7 O -0.951 6.951 8 O -0.954 6.954 9 C -0.932 4.932 10 C -0.053 4.053 11 N -0.128 5.128 12 N -0.137 5.137 13 C -0.062 4.062 14 C 0.077 3.923 15 C -0.189 4.189 16 N -0.146 5.146 17 C 0.150 3.850 18 C -0.589 4.589 19 H 0.073 0.927 20 C -0.178 4.178 21 N -0.555 5.555 22 Si 0.790 3.210 23 H -0.204 1.204 24 H -0.203 1.203 25 H -0.179 1.179 26 N -0.157 5.157 27 H 0.103 0.897 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.184 0.816 31 H 0.270 0.730 32 H 0.235 0.765 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.100 0.900 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.532 14.332 7.993 17.318 hybrid contribution 1.266 -0.454 0.528 1.444 sum -4.266 13.879 8.521 16.835 Atomic orbital electron populations 1.20275 0.83889 1.04366 1.03761 1.22669 0.98556 0.89541 0.98321 1.20986 0.88510 1.01197 1.25777 1.17711 0.87848 0.83490 1.00167 1.53139 1.12487 1.25444 1.86823 1.00190 0.72771 0.69774 0.73462 1.93551 1.64607 1.81635 1.55294 1.93581 1.38435 1.75446 1.87959 1.30859 1.12163 1.32395 1.17814 1.23823 0.93137 0.93256 0.95043 1.77357 1.07051 1.22827 1.05602 1.49275 1.11205 1.44760 1.08414 1.22475 1.05943 1.05860 0.71965 1.21202 0.93180 0.89974 0.87986 1.21130 0.89316 1.02520 1.05937 1.49119 1.06331 1.03003 1.56116 1.19255 0.78745 0.88914 0.98134 1.21375 1.13562 1.32461 0.91508 0.92689 1.25737 0.95483 0.94434 1.02100 1.70003 1.19491 1.32810 1.33222 0.85475 0.77551 0.79056 0.78886 1.20394 1.20320 1.17872 1.77339 0.86227 1.23656 1.28498 0.89670 0.88149 0.90670 0.81624 0.73037 0.76532 0.87808 0.87914 0.87009 0.85781 0.86995 0.89958 0.95575 0.93595 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.44 71.24 0.74 -0.91 16 2 C 0.07 2.78 7.21 43.08 0.31 3.09 16 3 C -0.33 -12.16 9.19 22.16 0.20 -11.95 16 4 C 0.33 13.36 7.57 131.43 0.99 14.36 16 5 N -1.03 -35.43 5.66 -55.51 -0.31 -35.74 16 6 S 2.75 84.92 4.96 -56.49 -0.28 84.64 16 7 O -0.96 -32.50 16.00 -128.00 -2.05 -34.55 16 8 O -0.96 -31.53 17.73 -128.00 -2.27 -33.80 16 9 C -0.83 -23.14 5.40 21.99 0.12 -23.02 16 10 C 0.14 3.56 10.88 85.24 0.93 4.49 16 11 N -0.31 -8.16 12.58 -57.02 -0.72 -8.88 16 12 N -0.36 -8.18 4.01 -356.03 -1.43 -9.61 16 13 C 0.08 0.97 11.27 127.77 1.44 2.41 16 14 C 0.21 5.33 6.93 41.41 0.29 5.62 16 15 C -0.13 -2.69 9.63 71.24 0.69 -2.01 16 16 N -0.36 -16.72 3.60 -348.93 -1.26 -17.98 16 17 C 0.27 13.63 6.01 85.63 0.51 14.15 16 18 C -0.55 -28.98 9.39 25.60 0.24 -28.74 16 19 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 20 C 0.02 1.23 5.46 84.65 0.46 1.70 16 21 N -0.92 -49.88 13.29 21.45 0.28 -49.60 16 22 Si 0.97 40.14 29.54 68.60 2.03 42.16 16 23 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 24 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 26 N -0.33 -15.06 12.56 -47.45 -0.60 -15.65 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.17 5.25 5.72 -2.91 -0.02 5.23 16 31 H 0.43 14.38 8.08 -96.74 -0.78 13.60 16 32 H 0.22 4.45 8.06 -2.91 -0.02 4.43 16 33 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.11 0.99 6.98 -2.39 -0.02 0.98 16 36 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.11 1.69 6.96 -2.39 -0.02 1.67 16 38 H 0.08 1.99 7.72 -2.39 -0.02 1.97 16 39 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.05 2.29 7.48 -2.39 -0.02 2.27 16 41 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -73.51 364.74 0.63 -72.88 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.30 Total: 26.98 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 6.93 Total: -20.83 kcal Atomic # 7 Polarization: -133.44 SS G_CDS: -4.03 Total: -137.47 kcal Atomic # 8 Polarization: -64.04 SS G_CDS: -4.32 Total: -68.35 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.16 kcal Atomic # 16 Polarization: 84.92 SS G_CDS: -0.28 Total: 84.64 kcal Total: -73.51 0.63 -72.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579546043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.772 kcal (2) G-P(sol) polarization free energy of solvation -73.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds