Wall clock time and date at job start Tue Mar 31 2020 22:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 120.00094 * 2 1 4 4 H 1.48507 * 109.46819 * 239.99898 * 3 2 1 5 5 H 1.48505 * 109.47120 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47374 * 120.00082 * 3 2 1 7 7 C 1.38945 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00238 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.34783 * 120.00021 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99847 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99984 * 179.97438 * 10 9 7 13 13 N 1.46493 * 109.47068 * 179.97438 * 12 10 9 14 14 C 1.34776 * 119.99791 * 180.02562 * 13 12 10 15 15 O 1.21585 * 120.00467 * 354.90288 * 14 13 12 16 16 N 1.34777 * 119.99999 * 174.90174 * 14 13 12 17 17 C 1.46684 * 121.33461 * 4.63702 * 16 14 13 18 18 C 1.50414 * 109.90528 * 224.30146 * 17 16 14 19 19 C 1.38830 * 117.82746 * 169.31888 * 18 17 16 20 20 C 1.37957 * 120.50404 * 179.05938 * 19 18 17 21 21 C 1.38270 * 119.71704 * 0.02562 * 20 19 18 22 22 C 1.37904 * 119.82805 * 0.24488 * 21 20 19 23 23 C 1.37680 * 122.31803 * 348.82663 * 18 17 16 24 24 C 1.50596 * 122.85626 * 1.23188 * 23 18 17 25 25 F 1.39907 * 109.19888 * 219.47543 * 24 23 18 26 26 F 1.39898 * 109.20144 * 100.18886 * 24 23 18 27 27 C 1.47232 * 121.34184 * 184.91750 * 16 14 13 28 28 H 0.97003 * 119.99786 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00306 * 359.97438 * 9 7 2 30 30 H 1.09008 * 109.46895 * 60.00013 * 12 10 9 31 31 H 1.08998 * 109.46855 * 300.00157 * 12 10 9 32 32 H 0.96998 * 120.00197 * 359.97438 * 13 12 10 33 33 H 1.09001 * 109.44097 * 344.45236 * 17 16 14 34 34 H 1.09005 * 109.43982 * 104.33021 * 17 16 14 35 35 H 1.07996 * 119.74973 * 359.04262 * 19 18 17 36 36 H 1.07998 * 120.14269 * 180.02562 * 20 19 18 37 37 H 1.07994 * 120.08670 * 180.25610 * 21 20 19 38 38 H 1.07992 * 119.71167 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.77340 * 235.37148 * 27 16 14 40 40 H 1.09005 * 109.76861 * 356.16263 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0022 13 7 2.1956 -5.9765 0.0027 14 6 1.7463 -7.2471 0.0027 15 8 0.5548 -7.4707 0.0959 16 7 2.6177 -8.2700 -0.1006 17 6 4.0663 -8.0397 -0.1134 18 6 4.7081 -8.8745 -1.1875 19 6 6.0371 -8.6205 -1.4984 20 6 6.6859 -9.3660 -2.4610 21 6 6.0066 -10.3733 -3.1211 22 6 4.6849 -10.6228 -2.8170 23 6 4.0277 -9.8712 -1.8502 24 6 2.5819 -10.1934 -1.5785 25 9 2.4060 -11.5810 -1.6094 26 9 1.7860 -9.6077 -2.5689 27 6 2.1539 -9.6630 -0.2111 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6173 -4.9213 -0.8881 31 1 0.6167 -4.9200 0.8919 32 1 3.1493 -5.7993 0.0022 33 1 4.2644 -6.9856 -0.3075 34 1 4.4860 -8.3148 0.8543 35 1 6.5669 -7.8331 -0.9831 36 1 7.7199 -9.1636 -2.6979 37 1 6.5099 -10.9633 -3.8727 38 1 4.1561 -11.4098 -3.3340 39 1 2.6061 -10.2658 0.5763 40 1 1.0678 -9.6979 -0.1254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588746581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:15 Heat of formation + Delta-G solvation = -121.246961 kcal Electronic energy + Delta-G solvation = -29117.499969 eV Core-core repulsion = 24568.411910 eV Total energy + Delta-G solvation = -4549.088058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.25040 -47.17297 -40.69969 -39.49486 -38.26681 -36.23342 -34.59677 -33.80494 -32.39010 -31.82682 -31.39737 -29.80880 -27.61009 -26.01715 -24.59303 -24.02854 -22.61108 -21.50616 -19.77331 -19.58547 -18.49975 -18.02188 -17.91990 -17.66265 -17.14902 -16.35657 -15.92151 -15.70031 -15.41736 -14.98075 -14.88247 -14.64803 -14.50836 -14.33107 -14.13005 -13.94493 -13.65467 -13.55579 -13.51055 -13.27002 -13.10846 -12.71162 -12.53764 -12.25228 -12.08938 -11.98208 -11.64989 -11.55949 -11.16767 -11.12030 -10.52598 -10.34439 -10.20270 -9.65014 -9.42439 -9.29782 -9.05883 -8.71535 -8.66517 -8.12576 -6.53358 -3.95663 0.72798 0.91212 2.29370 3.08875 3.12561 3.20274 3.21079 3.23675 3.35459 3.70899 3.73791 3.85036 4.04713 4.11078 4.18479 4.48382 4.63061 4.64366 4.79249 4.91058 4.97234 5.08599 5.11073 5.15239 5.18870 5.31262 5.42629 5.53205 5.82197 5.90407 5.95412 5.96344 6.02603 6.05445 6.08918 6.46337 6.62049 6.75511 7.43764 7.89468 7.95067 8.42103 8.57010 9.02074 9.36691 9.84209 10.63378 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.002565 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.273784 B =10912.732734 C =11942.702279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.428 3.572 11 O -0.600 6.600 12 C 0.126 3.874 13 N -0.720 5.720 14 C 0.717 3.283 15 O -0.583 6.583 16 N -0.630 5.630 17 C 0.142 3.858 18 C -0.056 4.056 19 C -0.117 4.117 20 C -0.094 4.094 21 C -0.123 4.123 22 C -0.084 4.084 23 C -0.146 4.146 24 C 0.325 3.675 25 F -0.191 7.191 26 F -0.186 7.186 27 C 0.099 3.901 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.406 0.594 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.956 -21.130 -2.427 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.214 3.786 11 O -0.487 6.487 12 C -0.002 4.002 13 N -0.378 5.378 14 C 0.418 3.582 15 O -0.460 6.460 16 N -0.368 5.368 17 C 0.019 3.981 18 C -0.057 4.057 19 C -0.136 4.136 20 C -0.112 4.112 21 C -0.141 4.141 22 C -0.102 4.102 23 C -0.147 4.147 24 C 0.288 3.712 25 F -0.172 7.172 26 F -0.166 7.166 27 C -0.026 4.026 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.246 0.754 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.658 -21.038 -2.381 23.271 hybrid contribution 0.225 0.798 -0.298 0.881 sum 9.883 -20.241 -2.680 22.683 Atomic orbital electron populations 1.69607 1.06020 1.28687 1.49061 1.25329 0.95664 0.99945 0.96714 0.85872 0.78788 0.80144 0.79152 1.19765 1.20835 1.19760 1.19676 0.93430 0.81978 1.48480 0.87708 1.41775 1.09521 1.04422 1.62437 1.19705 0.88266 0.84948 0.85697 1.90479 1.13730 1.86846 1.57598 1.20854 0.91187 0.84753 1.03407 1.44890 1.11441 1.03121 1.78394 1.15567 0.84484 0.80377 0.77757 1.90923 1.13788 1.83601 1.57719 1.46915 1.05516 1.05212 1.79108 1.20582 0.79742 1.00408 0.97401 1.19700 0.94495 0.95106 0.96445 1.21110 0.93381 1.00425 0.98651 1.21260 1.00196 0.94662 0.95053 1.21117 0.94259 0.98461 1.00307 1.21158 0.95140 0.98379 0.95536 1.19774 0.94010 0.99879 1.01022 1.19804 0.87677 0.74654 0.89100 1.93022 1.96207 1.30945 1.97034 1.93095 1.75392 1.83866 1.64289 1.22272 1.04668 0.82401 0.93301 0.91486 0.76971 0.89863 0.89660 0.75370 0.87663 0.88799 0.84628 0.85082 0.85241 0.85325 0.87802 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.68 13.05 55.50 0.72 -22.96 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.30 29.55 -169.99 -5.02 15.28 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.31 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.55 -13.38 5.29 -10.96 -0.06 -13.44 16 10 C 0.43 9.64 7.85 -10.98 -0.09 9.56 16 11 O -0.60 -14.90 15.24 5.55 0.08 -14.81 16 12 C 0.13 2.32 6.16 -5.20 -0.03 2.29 16 13 N -0.72 -12.03 5.44 -66.42 -0.36 -12.39 16 14 C 0.72 11.75 8.32 -86.92 -0.72 11.03 16 15 O -0.58 -11.28 15.84 5.29 0.08 -11.19 16 16 N -0.63 -8.04 2.94 -180.35 -0.53 -8.57 16 17 C 0.14 1.41 6.13 -5.23 -0.03 1.38 16 18 C -0.06 -0.56 5.81 -104.75 -0.61 -1.17 16 19 C -0.12 -0.97 9.62 -39.47 -0.38 -1.35 16 20 C -0.09 -0.70 10.05 -39.67 -0.40 -1.10 16 21 C -0.12 -0.97 10.04 -39.69 -0.40 -1.37 16 22 C -0.08 -0.81 9.28 -39.43 -0.37 -1.17 16 23 C -0.15 -1.60 5.35 -104.60 -0.56 -2.16 16 24 C 0.33 3.87 2.07 -28.05 -0.06 3.81 16 25 F -0.19 -2.16 16.27 2.25 0.04 -2.13 16 26 F -0.19 -2.75 17.01 2.25 0.04 -2.71 16 27 C 0.10 1.11 5.89 -3.75 -0.02 1.09 16 28 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 30 H 0.08 1.49 8.14 -51.92 -0.42 1.06 16 31 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.41 6.50 5.03 -40.82 -0.21 6.29 16 33 H 0.11 1.08 5.81 -51.93 -0.30 0.78 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.14 0.86 8.05 -52.49 -0.42 0.44 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.13 1.12 7.68 -52.49 -0.40 0.71 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.13 1.55 7.07 -51.93 -0.37 1.18 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -32.51 349.42 -7.72 -40.23 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -4.07 Total: 14.36 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: -3.91 Total: 13.08 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.22 Total: -57.36 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: 0.17 Total: -26.01 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.07 Total: -4.84 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.51 -7.72 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588746581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.019 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds