Wall clock time and date at job start Tue Mar 31 2020 22:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 120.00094 * 2 1 4 4 H 1.48507 * 109.46819 * 239.99898 * 3 2 1 5 5 H 1.48505 * 109.47120 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47374 * 120.00082 * 3 2 1 7 7 C 1.38945 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00238 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.34783 * 120.00021 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99847 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99984 * 179.97438 * 10 9 7 13 13 N 1.46493 * 109.47068 * 179.97438 * 12 10 9 14 14 C 1.34776 * 119.99791 * 180.02562 * 13 12 10 15 15 O 1.21585 * 120.00467 * 354.90288 * 14 13 12 16 16 N 1.34777 * 119.99999 * 174.90174 * 14 13 12 17 17 C 1.46684 * 121.33461 * 4.63702 * 16 14 13 18 18 C 1.50414 * 109.90528 * 224.30146 * 17 16 14 19 19 C 1.38830 * 117.82746 * 169.31888 * 18 17 16 20 20 C 1.37957 * 120.50404 * 179.05938 * 19 18 17 21 21 C 1.38270 * 119.71704 * 0.02562 * 20 19 18 22 22 C 1.37904 * 119.82805 * 0.24488 * 21 20 19 23 23 C 1.37680 * 122.31803 * 348.82663 * 18 17 16 24 24 C 1.50596 * 122.85626 * 1.23188 * 23 18 17 25 25 F 1.39907 * 109.19888 * 219.47543 * 24 23 18 26 26 F 1.39898 * 109.20144 * 100.18886 * 24 23 18 27 27 C 1.47232 * 121.34184 * 184.91750 * 16 14 13 28 28 H 0.97003 * 119.99786 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00306 * 359.97438 * 9 7 2 30 30 H 1.09008 * 109.46895 * 60.00013 * 12 10 9 31 31 H 1.08998 * 109.46855 * 300.00157 * 12 10 9 32 32 H 0.96998 * 120.00197 * 359.97438 * 13 12 10 33 33 H 1.09001 * 109.44097 * 344.45236 * 17 16 14 34 34 H 1.09005 * 109.43982 * 104.33021 * 17 16 14 35 35 H 1.07996 * 119.74973 * 359.04262 * 19 18 17 36 36 H 1.07998 * 120.14269 * 180.02562 * 20 19 18 37 37 H 1.07994 * 120.08670 * 180.25610 * 21 20 19 38 38 H 1.07992 * 119.71167 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.77340 * 235.37148 * 27 16 14 40 40 H 1.09005 * 109.76861 * 356.16263 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0022 13 7 2.1956 -5.9765 0.0027 14 6 1.7463 -7.2471 0.0027 15 8 0.5548 -7.4707 0.0959 16 7 2.6177 -8.2700 -0.1006 17 6 4.0663 -8.0397 -0.1134 18 6 4.7081 -8.8745 -1.1875 19 6 6.0371 -8.6205 -1.4984 20 6 6.6859 -9.3660 -2.4610 21 6 6.0066 -10.3733 -3.1211 22 6 4.6849 -10.6228 -2.8170 23 6 4.0277 -9.8712 -1.8502 24 6 2.5819 -10.1934 -1.5785 25 9 2.4060 -11.5810 -1.6094 26 9 1.7860 -9.6077 -2.5689 27 6 2.1539 -9.6630 -0.2111 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6173 -4.9213 -0.8881 31 1 0.6167 -4.9200 0.8919 32 1 3.1493 -5.7993 0.0022 33 1 4.2644 -6.9856 -0.3075 34 1 4.4860 -8.3148 0.8543 35 1 6.5669 -7.8331 -0.9831 36 1 7.7199 -9.1636 -2.6979 37 1 6.5099 -10.9633 -3.8727 38 1 4.1561 -11.4098 -3.3340 39 1 2.6061 -10.2658 0.5763 40 1 1.0678 -9.6979 -0.1254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588746581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:14 Heat of formation + Delta-G solvation = -142.452185 kcal Electronic energy + Delta-G solvation = -29118.419496 eV Core-core repulsion = 24568.411910 eV Total energy + Delta-G solvation = -4550.007586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.21564 -48.16433 -41.77524 -40.51985 -39.94180 -37.25397 -36.29541 -35.45939 -33.39562 -33.13831 -32.61126 -30.73810 -29.03259 -27.09000 -26.19510 -24.97748 -23.32283 -22.49860 -21.42385 -20.80736 -20.11550 -19.38866 -18.88608 -18.58969 -18.16776 -17.51123 -17.30057 -16.82554 -16.69318 -16.52952 -15.98812 -15.94889 -15.69152 -15.43534 -15.19340 -15.16190 -14.95873 -14.73414 -14.50492 -14.13278 -14.05411 -13.88843 -13.70598 -13.52767 -13.43766 -13.23203 -12.93730 -12.88780 -12.45816 -12.23231 -12.13145 -11.97640 -11.55908 -11.54990 -10.55811 -10.46446 -10.10492 -10.08290 -9.96876 -9.71173 -8.49959 -6.00274 0.04756 0.26646 1.16634 1.38983 1.44208 1.55099 1.84132 1.93431 2.27227 2.47539 2.55008 2.64498 2.89097 3.12618 3.17411 3.21418 3.40384 3.66148 3.89340 4.04177 4.13152 4.20060 4.26292 4.33394 4.39454 4.41181 4.43937 4.47813 4.54343 4.75086 4.91235 5.02502 5.20346 5.27621 5.35579 5.39204 5.44758 5.61191 5.87170 5.92404 6.48062 6.69949 7.03906 7.27213 7.45167 7.94162 8.66733 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.002565 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.273784 B =10912.732734 C =11942.702279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.337 4.337 8 H 0.089 0.911 9 N -0.558 5.558 10 C 0.435 3.565 11 O -0.622 6.622 12 C 0.139 3.861 13 N -0.719 5.719 14 C 0.716 3.284 15 O -0.617 6.617 16 N -0.624 5.624 17 C 0.139 3.861 18 C -0.067 4.067 19 C -0.121 4.121 20 C -0.091 4.091 21 C -0.122 4.122 22 C -0.099 4.099 23 C -0.167 4.167 24 C 0.322 3.678 25 F -0.190 7.190 26 F -0.208 7.208 27 C 0.098 3.902 28 H 0.280 0.720 29 H 0.399 0.601 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.411 0.589 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.950 -21.464 -2.416 24.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.107 0.893 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.510 6.510 12 C 0.010 3.990 13 N -0.378 5.378 14 C 0.417 3.583 15 O -0.497 6.497 16 N -0.361 5.361 17 C 0.018 3.982 18 C -0.069 4.069 19 C -0.139 4.139 20 C -0.109 4.109 21 C -0.140 4.140 22 C -0.117 4.117 23 C -0.168 4.168 24 C 0.285 3.715 25 F -0.171 7.171 26 F -0.190 7.190 27 C -0.027 4.027 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.251 0.749 33 H 0.119 0.881 34 H 0.141 0.859 35 H 0.173 0.827 36 H 0.178 0.822 37 H 0.172 0.828 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.679 -21.415 -2.373 24.508 hybrid contribution -0.327 0.777 -0.336 0.908 sum 11.351 -20.638 -2.709 23.709 Atomic orbital electron populations 1.69680 1.07066 1.29699 1.49241 1.26135 0.96509 1.02721 0.95774 0.84931 0.77714 0.76211 0.79160 1.19453 1.19806 1.19339 1.19717 0.93033 0.83445 1.50413 0.89342 1.41826 1.09612 1.04581 1.63353 1.20311 0.88114 0.85744 0.83643 1.90455 1.14978 1.87496 1.58048 1.20654 0.90989 0.83058 1.04267 1.44791 1.11304 1.02981 1.78771 1.15641 0.84443 0.80666 0.77525 1.90897 1.15418 1.84127 1.59284 1.46902 1.06420 1.04898 1.77854 1.20814 0.77904 1.00368 0.99156 1.19751 0.95321 0.95090 0.96696 1.21402 0.92744 1.00883 0.98852 1.21655 1.01449 0.93736 0.94031 1.21458 0.93530 0.98549 1.00432 1.21320 0.96163 0.98624 0.95614 1.19796 0.93318 1.01237 1.02468 1.19982 0.88354 0.74588 0.88623 1.93015 1.96277 1.30783 1.96994 1.93046 1.76239 1.84311 1.65355 1.22427 1.04155 0.81965 0.94130 0.91086 0.76720 0.89164 0.88570 0.74857 0.88087 0.85900 0.82682 0.82230 0.82761 0.85245 0.84522 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.47 13.05 21.66 0.28 -48.19 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 3 Si 1.00 41.16 29.55 68.60 2.03 43.18 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.34 -18.25 9.68 84.04 0.81 -17.44 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -27.65 5.29 -306.98 -1.62 -29.27 16 10 C 0.43 19.66 7.85 87.66 0.69 20.35 16 11 O -0.62 -30.96 15.24 -3.07 -0.05 -31.01 16 12 C 0.14 5.07 6.16 85.63 0.53 5.59 16 13 N -0.72 -23.73 5.44 -482.30 -2.62 -26.36 16 14 C 0.72 23.28 8.32 179.05 1.49 24.77 16 15 O -0.62 -24.04 15.84 -3.98 -0.06 -24.10 16 16 N -0.62 -15.45 2.94 -842.78 -2.48 -17.93 16 17 C 0.14 2.56 6.13 85.51 0.52 3.08 16 18 C -0.07 -1.24 5.81 -19.94 -0.12 -1.35 16 19 C -0.12 -1.69 9.62 22.34 0.21 -1.47 16 20 C -0.09 -1.07 10.05 22.21 0.22 -0.85 16 21 C -0.12 -1.61 10.04 22.20 0.22 -1.38 16 22 C -0.10 -1.78 9.28 22.37 0.21 -1.58 16 23 C -0.17 -3.51 5.35 -19.85 -0.11 -3.61 16 24 C 0.32 7.61 2.07 29.74 0.06 7.67 16 25 F -0.19 -4.26 16.27 44.97 0.73 -3.53 16 26 F -0.21 -6.33 17.01 44.97 0.77 -5.57 16 27 C 0.10 2.15 5.89 86.17 0.51 2.66 16 28 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 29 H 0.40 19.09 7.90 -92.71 -0.73 18.35 16 30 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 31 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.41 12.88 5.03 -92.71 -0.47 12.41 16 33 H 0.10 1.94 5.81 -2.39 -0.01 1.93 16 34 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.16 1.49 8.05 -2.91 -0.02 1.47 16 36 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.13 2.19 7.68 -2.91 -0.02 2.16 16 39 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.11 2.78 7.07 -2.38 -0.02 2.76 16 Total: -1.00 -70.14 349.42 2.63 -67.51 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: -0.07 Total: 38.90 kcal Atomic # 6 Polarization: 30.63 SS G_CDS: 5.73 Total: 36.36 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -6.44 Total: -121.75 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -0.11 Total: -55.11 kcal Atomic # 9 Polarization: -10.60 SS G_CDS: 1.50 Total: -9.10 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -70.14 2.63 -67.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588746581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.938 kcal (2) G-P(sol) polarization free energy of solvation -70.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds