Wall clock time and date at job start Tue Mar 31 2020 22:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00302 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00112 * 3 2 1 7 7 C 1.38945 * 119.99901 * 180.27968 * 2 1 3 8 8 H 1.07998 * 120.00275 * 179.72325 * 7 2 1 9 9 N 1.37105 * 120.00017 * 359.71836 * 7 2 1 10 10 C 1.34777 * 120.00244 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99685 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00076 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.46924 * 180.02562 * 12 10 9 14 14 C 1.34780 * 120.00259 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99585 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00213 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99836 * 180.02562 * 16 14 13 18 18 H 1.08996 * 110.67217 * 34.30340 * 17 16 14 19 19 C 1.54886 * 110.75591 * 271.06300 * 17 16 14 20 20 C 1.54472 * 104.09994 * 203.89418 * 19 17 16 21 21 C 1.53878 * 106.68320 * 23.34504 * 20 19 17 22 22 O 1.42901 * 110.02957 * 240.87080 * 21 20 19 23 23 C 1.52996 * 110.07147 * 119.46374 * 21 20 19 24 24 F 1.39893 * 109.47205 * 302.80892 * 23 21 20 25 25 F 1.39903 * 109.46937 * 62.80670 * 23 21 20 26 26 F 1.39901 * 109.46994 * 182.80704 * 23 21 20 27 27 C 1.54266 * 106.59939 * 0.15607 * 21 20 19 28 28 H 0.97000 * 120.00371 * 180.02562 * 1 2 3 29 29 H 0.97004 * 120.00104 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47048 * 299.99798 * 12 10 9 31 31 H 1.08993 * 109.47202 * 60.00332 * 12 10 9 32 32 H 0.97005 * 120.00177 * 0.02562 * 13 12 10 33 33 H 0.97005 * 120.00224 * 0.02562 * 16 14 13 34 34 H 1.08996 * 110.48748 * 322.42381 * 19 17 16 35 35 H 1.09003 * 110.48285 * 85.06973 * 19 17 16 36 36 H 1.09001 * 109.85444 * 264.10732 * 20 19 17 37 37 H 1.08991 * 110.16062 * 142.75175 * 20 19 17 38 38 H 0.96691 * 114.00143 * 297.16720 * 22 21 20 39 39 H 1.08997 * 110.48596 * 217.71326 * 27 21 20 40 40 H 1.09002 * 110.59467 * 95.12569 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0088 -1.2033 -0.0059 8 1 3.0888 -1.2034 -0.0104 9 7 1.3233 -2.3907 -0.0058 10 6 1.9971 -3.5579 -0.0121 11 8 3.2101 -3.5579 -0.0172 12 6 1.2436 -4.8629 -0.0126 13 7 2.1956 -5.9764 -0.0192 14 6 1.7464 -7.2472 -0.0203 15 8 0.5509 -7.4693 -0.0163 16 7 2.6222 -8.2715 -0.0259 17 6 2.1338 -9.6528 -0.0277 18 1 1.2093 -9.7333 -0.5994 19 6 1.9305 -10.1649 1.4198 20 6 2.0330 -11.7011 1.2934 21 6 2.8440 -11.9861 0.0172 22 8 2.0528 -12.7335 -0.9088 23 6 4.1155 -12.7624 0.3655 24 9 4.8655 -12.0354 1.2961 25 9 3.7695 -14.0028 0.9124 26 9 4.8741 -12.9589 -0.7934 27 6 3.2108 -10.6150 -0.5873 28 1 -0.4851 -0.8400 0.0004 29 1 0.3533 -2.3907 -0.0021 30 1 0.6208 -4.9232 0.8799 31 1 0.6132 -4.9181 -0.9000 32 1 3.1493 -5.7992 -0.0221 33 1 3.5759 -8.0943 -0.0288 34 1 2.7156 -9.7842 2.0730 35 1 0.9483 -9.8745 1.7928 36 1 1.0358 -12.1327 1.2064 37 1 2.5448 -12.1161 2.1615 38 1 1.7898 -13.6064 -0.5866 39 1 3.1608 -10.6522 -1.6755 40 1 4.2043 -10.3061 -0.2623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589931165.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:57 Heat of formation + Delta-G solvation = -273.662745 kcal Electronic energy + Delta-G solvation = -29420.987792 eV Core-core repulsion = 24434.521264 eV Total energy + Delta-G solvation = -4986.466528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.65248 -48.17358 -48.08298 -40.39274 -39.32836 -38.32206 -36.15862 -34.72165 -33.85107 -33.33990 -31.25450 -29.73674 -29.02810 -27.18782 -25.02008 -24.19038 -21.70330 -21.27842 -20.71942 -19.95696 -19.43307 -18.92923 -18.72841 -18.47552 -18.06202 -17.06569 -16.32622 -15.90692 -15.50265 -15.43319 -15.14393 -14.93979 -14.84994 -14.55535 -14.46010 -14.33040 -14.23222 -14.20873 -14.16820 -13.83065 -13.81047 -13.63141 -13.31273 -12.69544 -12.43145 -12.34508 -11.99753 -11.82967 -11.65812 -11.33462 -11.16171 -11.02568 -10.89954 -10.26340 -10.17519 -9.96847 -9.68668 -9.29867 -8.74769 -8.69599 -8.17532 -6.85943 -4.00647 2.05906 2.60492 3.04661 3.11573 3.21216 3.24979 3.30265 3.36760 3.50582 3.63922 3.68355 3.95214 4.03404 4.16512 4.37165 4.58022 4.59637 4.72290 4.75174 4.85787 4.96809 5.15841 5.20274 5.38378 5.40330 5.68606 5.74782 5.80984 5.84887 5.87052 6.37121 6.61478 6.69487 6.96111 7.66183 7.95800 8.11008 8.44112 8.62360 8.67846 9.32989 9.66888 10.56855 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.033674 B = 0.001825 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.293238 B =15338.109999 C =15724.557984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C -0.006 4.006 3 Si 1.093 2.907 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.386 4.386 8 H 0.101 0.899 9 N -0.561 5.561 10 C 0.431 3.569 11 O -0.592 6.592 12 C 0.129 3.871 13 N -0.723 5.723 14 C 0.707 3.293 15 O -0.595 6.595 16 N -0.742 5.742 17 C 0.170 3.830 18 H 0.107 0.893 19 C -0.134 4.134 20 C -0.147 4.147 21 C 0.099 3.901 22 O -0.524 6.524 23 C 0.426 3.574 24 F -0.175 7.175 25 F -0.184 7.184 26 F -0.175 7.175 27 C -0.121 4.121 28 H 0.263 0.737 29 H 0.380 0.620 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.407 0.593 33 H 0.398 0.602 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.388 0.612 39 H 0.102 0.898 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.892 -27.152 1.574 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.210 4.210 3 Si 0.918 3.082 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.516 4.516 8 H 0.119 0.881 9 N -0.198 5.198 10 C 0.217 3.783 11 O -0.478 6.478 12 C 0.000 4.000 13 N -0.381 5.381 14 C 0.407 3.593 15 O -0.474 6.474 16 N -0.397 5.397 17 C 0.064 3.936 18 H 0.125 0.875 19 C -0.173 4.173 20 C -0.185 4.185 21 C 0.055 3.945 22 O -0.330 6.330 23 C 0.371 3.629 24 F -0.156 7.156 25 F -0.165 7.165 26 F -0.156 7.156 27 C -0.159 4.159 28 H 0.075 0.925 29 H 0.213 0.787 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.245 0.755 33 H 0.232 0.768 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.237 0.763 39 H 0.121 0.879 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.507 -25.107 1.210 25.537 hybrid contribution 0.737 -2.372 0.457 2.526 sum 5.244 -27.480 1.667 28.025 Atomic orbital electron populations 1.70898 1.06552 1.29677 1.45971 1.26601 0.96516 1.02797 0.95060 0.83115 0.74461 0.73464 0.77143 1.20298 1.20901 1.20888 1.20561 0.94767 0.83634 1.52594 0.88080 1.41859 1.08498 1.05411 1.63996 1.19679 0.88327 0.84758 0.85572 1.90498 1.13667 1.86717 1.56872 1.20773 0.91236 0.84863 1.03096 1.44760 1.11267 1.03290 1.78759 1.15815 0.85194 0.80517 0.77803 1.90912 1.13961 1.84206 1.58300 1.44969 1.09124 1.04542 1.81090 1.21618 0.97236 0.78973 0.95820 0.87506 1.22836 1.04079 0.92617 0.97814 1.22905 1.01338 0.98912 0.95373 1.22948 0.86589 0.92205 0.92764 1.86731 1.70108 1.33375 1.42822 1.21530 0.87836 0.78633 0.74903 1.93203 1.78578 1.77197 1.66622 1.93179 1.92011 1.45057 1.86267 1.93220 1.78207 1.95233 1.48952 1.22667 1.00329 0.89639 1.03259 0.92503 0.78692 0.90037 0.90013 0.75510 0.76753 0.90334 0.89573 0.88550 0.89900 0.76273 0.87917 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.45 13.68 55.50 0.76 -23.69 16 2 C -0.01 -0.16 5.50 -17.47 -0.10 -0.26 16 3 Si 1.09 23.53 29.92 -169.99 -5.09 18.44 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.39 -10.52 9.68 -14.93 -0.14 -10.66 16 8 H 0.10 2.89 7.16 -52.49 -0.38 2.52 16 9 N -0.56 -13.68 5.28 -10.96 -0.06 -13.74 16 10 C 0.43 9.74 7.85 -10.99 -0.09 9.65 16 11 O -0.59 -15.01 15.24 5.54 0.08 -14.93 16 12 C 0.13 2.32 6.15 -5.20 -0.03 2.29 16 13 N -0.72 -11.60 5.53 -66.42 -0.37 -11.97 16 14 C 0.71 10.71 8.57 -86.92 -0.74 9.96 16 15 O -0.60 -10.92 16.03 5.28 0.08 -10.83 16 16 N -0.74 -7.96 5.20 -56.73 -0.29 -8.26 16 17 C 0.17 1.57 3.21 -65.93 -0.21 1.36 16 18 H 0.11 1.19 7.62 -51.93 -0.40 0.80 16 19 C -0.13 -1.09 6.53 -24.96 -0.16 -1.25 16 20 C -0.15 -0.88 5.91 -25.50 -0.15 -1.03 16 21 C 0.10 0.66 0.83 -89.50 -0.07 0.58 16 22 O -0.52 -3.38 12.87 -35.23 -0.45 -3.83 16 23 C 0.43 3.15 2.19 37.16 0.08 3.24 16 24 F -0.17 -1.41 16.07 2.25 0.04 -1.37 16 25 F -0.18 -1.32 16.62 2.25 0.04 -1.28 16 26 F -0.17 -1.53 17.03 2.25 0.04 -1.49 16 27 C -0.12 -0.88 5.41 -25.07 -0.14 -1.02 16 28 H 0.26 6.94 6.78 -40.82 -0.28 6.66 16 29 H 0.38 8.58 6.73 -40.82 -0.27 8.30 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.41 6.36 7.45 -40.82 -0.30 6.05 16 33 H 0.40 3.36 8.56 -40.82 -0.35 3.01 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.48 7.95 -51.93 -0.41 0.07 16 37 H 0.08 0.45 7.31 -51.93 -0.38 0.07 16 38 H 0.39 1.11 8.68 45.56 0.40 1.50 16 39 H 0.10 0.77 8.07 -51.93 -0.42 0.36 16 40 H 0.10 0.61 7.23 -51.93 -0.38 0.23 16 LS Contribution 352.75 15.07 5.32 5.32 Total: -1.00 -33.82 352.75 -5.31 -39.13 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -3.65 Total: 15.65 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -1.76 Total: 12.86 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.04 Total: -57.66 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.28 Total: -29.60 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.11 Total: -4.14 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.09 Total: 18.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.82 -5.31 -39.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589931165.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -234.531 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds