Wall clock time and date at job start Tue Mar 31 2020 22:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00302 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00112 * 3 2 1 7 7 C 1.38945 * 119.99901 * 180.27968 * 2 1 3 8 8 H 1.07998 * 120.00275 * 179.72325 * 7 2 1 9 9 N 1.37105 * 120.00017 * 359.71836 * 7 2 1 10 10 C 1.34777 * 120.00244 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99685 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00076 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.46924 * 180.02562 * 12 10 9 14 14 C 1.34780 * 120.00259 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99585 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00213 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99836 * 180.02562 * 16 14 13 18 18 H 1.08996 * 110.67217 * 34.30340 * 17 16 14 19 19 C 1.54886 * 110.75591 * 271.06300 * 17 16 14 20 20 C 1.54472 * 104.09994 * 203.89418 * 19 17 16 21 21 C 1.53878 * 106.68320 * 23.34504 * 20 19 17 22 22 O 1.42901 * 110.02957 * 240.87080 * 21 20 19 23 23 C 1.52996 * 110.07147 * 119.46374 * 21 20 19 24 24 F 1.39893 * 109.47205 * 302.80892 * 23 21 20 25 25 F 1.39903 * 109.46937 * 62.80670 * 23 21 20 26 26 F 1.39901 * 109.46994 * 182.80704 * 23 21 20 27 27 C 1.54266 * 106.59939 * 0.15607 * 21 20 19 28 28 H 0.97000 * 120.00371 * 180.02562 * 1 2 3 29 29 H 0.97004 * 120.00104 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47048 * 299.99798 * 12 10 9 31 31 H 1.08993 * 109.47202 * 60.00332 * 12 10 9 32 32 H 0.97005 * 120.00177 * 0.02562 * 13 12 10 33 33 H 0.97005 * 120.00224 * 0.02562 * 16 14 13 34 34 H 1.08996 * 110.48748 * 322.42381 * 19 17 16 35 35 H 1.09003 * 110.48285 * 85.06973 * 19 17 16 36 36 H 1.09001 * 109.85444 * 264.10732 * 20 19 17 37 37 H 1.08991 * 110.16062 * 142.75175 * 20 19 17 38 38 H 0.96691 * 114.00143 * 297.16720 * 22 21 20 39 39 H 1.08997 * 110.48596 * 217.71326 * 27 21 20 40 40 H 1.09002 * 110.59467 * 95.12569 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0088 -1.2033 -0.0059 8 1 3.0888 -1.2034 -0.0104 9 7 1.3233 -2.3907 -0.0058 10 6 1.9971 -3.5579 -0.0121 11 8 3.2101 -3.5579 -0.0172 12 6 1.2436 -4.8629 -0.0126 13 7 2.1956 -5.9764 -0.0192 14 6 1.7464 -7.2472 -0.0203 15 8 0.5509 -7.4693 -0.0163 16 7 2.6222 -8.2715 -0.0259 17 6 2.1338 -9.6528 -0.0277 18 1 1.2093 -9.7333 -0.5994 19 6 1.9305 -10.1649 1.4198 20 6 2.0330 -11.7011 1.2934 21 6 2.8440 -11.9861 0.0172 22 8 2.0528 -12.7335 -0.9088 23 6 4.1155 -12.7624 0.3655 24 9 4.8655 -12.0354 1.2961 25 9 3.7695 -14.0028 0.9124 26 9 4.8741 -12.9589 -0.7934 27 6 3.2108 -10.6150 -0.5873 28 1 -0.4851 -0.8400 0.0004 29 1 0.3533 -2.3907 -0.0021 30 1 0.6208 -4.9232 0.8799 31 1 0.6132 -4.9181 -0.9000 32 1 3.1493 -5.7992 -0.0221 33 1 3.5759 -8.0943 -0.0288 34 1 2.7156 -9.7842 2.0730 35 1 0.9483 -9.8745 1.7928 36 1 1.0358 -12.1327 1.2064 37 1 2.5448 -12.1161 2.1615 38 1 1.7898 -13.6064 -0.5866 39 1 3.1608 -10.6522 -1.6755 40 1 4.2043 -10.3061 -0.2623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589931165.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:56 Heat of formation + Delta-G solvation = -301.586238 kcal Electronic energy + Delta-G solvation = -29422.198645 eV Core-core repulsion = 24434.521264 eV Total energy + Delta-G solvation = -4987.677381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.24314 -48.74994 -48.70041 -41.44664 -40.45998 -39.79943 -36.93875 -36.54481 -35.34322 -34.23708 -33.22304 -30.32824 -29.97002 -28.50666 -26.24894 -25.51072 -22.67136 -21.92549 -21.70393 -21.62556 -20.12460 -20.02219 -19.83091 -19.35320 -19.31522 -17.95831 -17.50890 -17.30467 -16.88833 -16.67565 -15.99459 -15.85748 -15.68492 -15.53441 -15.50999 -15.43344 -15.33896 -15.14317 -14.92217 -14.84564 -14.55896 -14.49374 -14.14279 -14.00051 -13.73797 -13.38480 -13.30875 -12.84307 -12.76575 -12.52136 -12.21573 -11.94472 -11.90821 -11.80943 -11.57216 -11.46959 -11.42518 -10.60923 -10.45745 -10.17948 -9.89146 -8.95495 -6.11438 1.40693 1.48387 1.55770 1.59812 1.84595 1.89046 2.06121 2.41241 2.54179 2.57156 2.72745 2.90067 3.06912 3.14025 3.28081 3.38993 3.51864 3.93533 3.98447 4.01048 4.19458 4.22912 4.32875 4.35676 4.38506 4.67100 4.78126 4.85040 5.05213 5.09162 5.24910 5.47311 5.59145 5.87981 5.93166 6.39092 6.47538 6.63204 6.97822 7.34559 7.48463 7.75785 8.51268 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.033674 B = 0.001825 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.293238 B =15338.109999 C =15724.557984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.040 4.040 3 Si 1.135 2.865 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.411 4.411 8 H 0.081 0.919 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.618 6.618 12 C 0.142 3.858 13 N -0.725 5.725 14 C 0.708 3.292 15 O -0.627 6.627 16 N -0.725 5.725 17 C 0.166 3.834 18 H 0.088 0.912 19 C -0.132 4.132 20 C -0.140 4.140 21 C 0.106 3.894 22 O -0.534 6.534 23 C 0.427 3.573 24 F -0.178 7.178 25 F -0.181 7.181 26 F -0.183 7.183 27 C -0.117 4.117 28 H 0.261 0.739 29 H 0.387 0.613 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.411 0.589 33 H 0.412 0.588 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.403 0.597 39 H 0.101 0.899 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.449 -28.292 1.818 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.239 4.239 3 Si 0.955 3.045 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.540 4.540 8 H 0.099 0.901 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.505 6.505 12 C 0.014 3.986 13 N -0.382 5.382 14 C 0.407 3.593 15 O -0.509 6.509 16 N -0.380 5.380 17 C 0.060 3.940 18 H 0.106 0.894 19 C -0.171 4.171 20 C -0.178 4.178 21 C 0.062 3.938 22 O -0.343 6.343 23 C 0.373 3.627 24 F -0.159 7.159 25 F -0.163 7.163 26 F -0.165 7.165 27 C -0.155 4.155 28 H 0.072 0.928 29 H 0.222 0.778 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.248 0.752 33 H 0.248 0.752 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.255 0.745 39 H 0.119 0.881 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.083 -26.320 1.457 26.846 hybrid contribution 0.585 -2.170 0.373 2.278 sum 5.669 -28.490 1.830 29.106 Atomic orbital electron populations 1.70968 1.07134 1.29725 1.47241 1.27908 0.96636 1.05531 0.93863 0.82613 0.73795 0.70077 0.78064 1.19981 1.19587 1.19626 1.20574 0.94181 0.85191 1.54091 0.90104 1.41897 1.08906 1.05379 1.64955 1.20426 0.88160 0.85750 0.83119 1.90478 1.15197 1.87482 1.57376 1.20575 0.91008 0.82880 1.04165 1.44681 1.10995 1.03269 1.79280 1.15893 0.85165 0.80679 0.77530 1.90893 1.15538 1.84605 1.59833 1.44869 1.09343 1.04265 1.79538 1.21697 0.97224 0.78309 0.96746 0.89427 1.22774 1.03418 0.94166 0.96732 1.22874 1.02150 0.97281 0.95458 1.22821 0.86350 0.91737 0.92903 1.86710 1.69943 1.34538 1.43113 1.21614 0.87814 0.78742 0.74560 1.93197 1.78744 1.77283 1.66722 1.93185 1.91951 1.44938 1.86193 1.93205 1.78499 1.95297 1.49469 1.22632 1.00161 0.89557 1.03160 0.92819 0.77831 0.88856 0.88932 0.75171 0.75171 0.89963 0.90931 0.87314 0.88830 0.74456 0.88082 0.87328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.92 13.68 21.66 0.30 -49.62 16 2 C -0.04 -2.13 5.50 84.92 0.47 -1.66 16 3 Si 1.14 46.83 29.92 68.60 2.05 48.89 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 7 C -0.41 -22.60 9.68 84.04 0.81 -21.78 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.57 -28.15 5.28 -306.98 -1.62 -29.77 16 10 C 0.44 19.74 7.85 87.66 0.69 20.43 16 11 O -0.62 -31.38 15.24 -3.08 -0.05 -31.43 16 12 C 0.14 5.01 6.15 85.63 0.53 5.53 16 13 N -0.72 -22.52 5.53 -482.31 -2.67 -25.19 16 14 C 0.71 20.75 8.57 179.06 1.53 22.28 16 15 O -0.63 -22.64 16.03 -4.01 -0.06 -22.70 16 16 N -0.72 -14.64 5.20 -451.65 -2.35 -16.99 16 17 C 0.17 2.88 3.21 46.28 0.15 3.03 16 18 H 0.09 1.92 7.62 -2.39 -0.02 1.90 16 19 C -0.13 -1.95 6.53 31.74 0.21 -1.74 16 20 C -0.14 -1.39 5.91 31.39 0.19 -1.20 16 21 C 0.11 1.20 0.83 -10.07 -0.01 1.20 16 22 O -0.53 -5.88 12.87 -148.98 -1.92 -7.80 16 23 C 0.43 5.50 2.19 71.98 0.16 5.66 16 24 F -0.18 -2.51 16.07 44.97 0.72 -1.79 16 25 F -0.18 -2.22 16.62 44.97 0.75 -1.48 16 26 F -0.18 -2.90 17.03 44.97 0.77 -2.14 16 27 C -0.12 -1.51 5.41 31.67 0.17 -1.34 16 28 H 0.26 13.83 6.78 -92.71 -0.63 13.20 16 29 H 0.39 17.62 6.73 -92.71 -0.62 17.00 16 30 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.41 12.40 7.45 -92.70 -0.69 11.71 16 33 H 0.41 6.23 8.56 -92.70 -0.79 5.43 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.11 0.84 7.95 -2.39 -0.02 0.82 16 37 H 0.09 0.78 7.31 -2.39 -0.02 0.76 16 38 H 0.40 1.45 8.68 -74.06 -0.64 0.80 16 39 H 0.10 1.38 8.07 -2.39 -0.02 1.36 16 40 H 0.11 1.14 7.23 -2.39 -0.02 1.12 16 Total: -1.00 -71.75 352.75 -0.64 -72.39 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -1.45 Total: 37.23 kcal Atomic # 6 Polarization: 25.50 SS G_CDS: 4.89 Total: 30.40 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -6.34 Total: -121.57 kcal Atomic # 8 Polarization: -59.90 SS G_CDS: -2.03 Total: -61.93 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 2.24 Total: -5.40 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.05 Total: 48.89 kcal Total: -71.75 -0.64 -72.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589931165.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -229.199 kcal (2) G-P(sol) polarization free energy of solvation -71.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -300.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -301.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds