Wall clock time and date at job start Tue Mar 31 2020 22:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00057 * 3 2 1 5 5 H 1.48496 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00050 * 3 2 1 7 7 C 1.38956 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00656 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47289 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00072 * 179.97438 * 13 12 10 15 15 O 1.21583 * 120.00212 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99868 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00109 * 180.02562 * 16 14 13 18 18 H 1.08997 * 110.43698 * 327.54245 * 17 16 14 19 19 C 1.54885 * 110.48640 * 90.22650 * 17 16 14 20 20 C 1.54886 * 102.75120 * 156.62259 * 19 17 16 21 21 C 1.54267 * 104.19476 * 322.05912 * 20 19 17 22 22 O 1.42904 * 110.07219 * 264.30182 * 21 20 19 23 23 C 1.53001 * 110.03744 * 142.89523 * 21 20 19 24 24 F 1.39902 * 109.46719 * 302.83552 * 23 21 20 25 25 F 1.39905 * 109.47002 * 62.82884 * 23 21 20 26 26 F 1.39896 * 109.47376 * 182.83434 * 23 21 20 27 27 C 1.53871 * 106.60098 * 23.60641 * 21 20 19 28 28 H 0.96996 * 120.00054 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 31 31 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 13 12 10 33 33 H 0.97006 * 119.99964 * 0.02562 * 16 14 13 34 34 H 1.09001 * 110.75897 * 274.93775 * 19 17 16 35 35 H 1.08997 * 110.75550 * 38.30775 * 19 17 16 36 36 H 1.09004 * 110.48889 * 203.38067 * 20 19 17 37 37 H 1.09001 * 110.60113 * 80.78642 * 20 19 17 38 38 H 0.96704 * 114.00242 * 297.19055 * 22 21 20 39 39 H 1.08995 * 110.03485 * 240.71876 * 27 21 20 40 40 H 1.09003 * 110.07707 * 119.30664 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2438 -4.8629 -0.0022 13 7 2.1958 -5.9765 -0.0027 14 6 1.7465 -7.2472 -0.0027 15 8 0.5511 -7.4693 -0.0019 16 7 2.6223 -8.2716 -0.0037 17 6 2.1340 -9.6528 -0.0043 18 1 1.1948 -9.7247 0.5442 19 6 1.9581 -10.1649 -1.4554 20 6 2.0499 -11.7020 -1.2890 21 6 3.1355 -11.9017 -0.2113 22 8 4.4010 -12.1445 -0.8292 23 6 2.7628 -13.0749 0.6973 24 9 1.5087 -12.8401 1.2711 25 9 2.7175 -14.2526 -0.0566 26 9 3.7212 -13.2048 1.7081 27 6 3.1891 -10.5988 0.6054 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 -0.0016 30 1 0.6174 -4.9205 -0.8924 31 1 0.6168 -4.9209 0.8876 32 1 3.1494 -5.7992 -0.0022 33 1 3.5760 -8.0943 -0.0040 34 1 0.9844 -9.8767 -1.8515 35 1 2.7606 -9.7970 -2.0948 36 1 2.3518 -12.1699 -2.2260 37 1 1.0969 -12.1087 -0.9502 38 1 4.4315 -12.9528 -1.3591 39 1 4.1800 -10.1512 0.5299 40 1 2.9499 -10.8015 1.6494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589931166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:00 Heat of formation + Delta-G solvation = -274.171338 kcal Electronic energy + Delta-G solvation = -29382.234022 eV Core-core repulsion = 24395.745440 eV Total energy + Delta-G solvation = -4986.488582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.60944 -48.12872 -48.04388 -40.36277 -39.26971 -38.17354 -36.11846 -34.41754 -33.70281 -33.26004 -31.37950 -29.79493 -28.93276 -27.19060 -25.03452 -24.34551 -21.76811 -21.10205 -20.75732 -19.61829 -19.25857 -18.78332 -18.77339 -18.40454 -17.94859 -16.95418 -16.40651 -15.61315 -15.55763 -15.34934 -14.91272 -14.89216 -14.79943 -14.52708 -14.49708 -14.35582 -14.22575 -14.17584 -14.03628 -13.91876 -13.59578 -13.39810 -13.20271 -12.48350 -12.34362 -12.19077 -12.14549 -11.79698 -11.68045 -11.63288 -11.15411 -11.10490 -10.82752 -10.51265 -10.32292 -10.08588 -9.63155 -9.23807 -8.66467 -8.63481 -8.10593 -6.51765 -3.93874 2.11676 2.63922 3.09866 3.13379 3.16176 3.21336 3.25201 3.28687 3.40727 3.69811 3.74499 3.96037 4.06456 4.09132 4.41096 4.66076 4.72934 4.75917 4.85937 4.89074 4.98826 5.16817 5.20353 5.39004 5.41726 5.75322 5.80433 5.92270 5.99228 6.07232 6.43398 6.70594 6.71853 7.03220 7.45412 7.91663 8.18262 8.44653 8.74066 9.04112 9.38954 9.86836 10.65021 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036836 B = 0.001795 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.936890 B =15599.242597 C =15785.939155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.128 3.872 13 N -0.723 5.723 14 C 0.706 3.294 15 O -0.596 6.596 16 N -0.742 5.742 17 C 0.166 3.834 18 H 0.105 0.895 19 C -0.129 4.129 20 C -0.148 4.148 21 C 0.099 3.901 22 O -0.524 6.524 23 C 0.424 3.576 24 F -0.174 7.174 25 F -0.184 7.184 26 F -0.176 7.176 27 C -0.122 4.122 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.407 0.593 33 H 0.398 0.602 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.387 0.613 39 H 0.105 0.895 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -26.638 -1.551 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.380 5.380 14 C 0.406 3.594 15 O -0.475 6.475 16 N -0.397 5.397 17 C 0.059 3.941 18 H 0.123 0.877 19 C -0.168 4.168 20 C -0.186 4.186 21 C 0.055 3.945 22 O -0.331 6.331 23 C 0.370 3.630 24 F -0.155 7.155 25 F -0.165 7.165 26 F -0.157 7.157 27 C -0.160 4.160 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.245 0.755 33 H 0.233 0.767 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.237 0.763 39 H 0.123 0.877 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.005 -26.082 -1.215 26.416 hybrid contribution 0.494 0.139 -0.073 0.518 sum 4.499 -25.943 -1.288 26.362 Atomic orbital electron populations 1.69605 1.05999 1.28640 1.49216 1.25330 0.95676 0.99939 0.96789 0.85867 0.78768 0.80146 0.79145 1.19784 1.20865 1.19786 1.19674 0.93424 0.82012 1.48391 0.87741 1.41780 1.09498 1.04450 1.62627 1.19759 0.88294 0.85015 0.85563 1.90489 1.13760 1.86857 1.57397 1.20793 0.91195 0.84834 1.03171 1.44777 1.11309 1.03305 1.78640 1.15834 0.85195 0.80571 0.77832 1.90908 1.13975 1.84216 1.58365 1.45045 1.09129 1.04443 1.81130 1.21532 0.97228 0.79375 0.95938 0.87663 1.22907 1.03954 0.92451 0.97525 1.23084 0.98148 0.99205 0.98137 1.22997 0.87175 0.91695 0.92653 1.86723 1.30172 1.48151 1.68042 1.21569 0.75214 0.85090 0.81160 1.93213 1.42224 1.94314 1.85752 1.93177 1.96207 1.51270 1.75891 1.93214 1.63834 1.96300 1.62346 1.22453 1.02531 0.91909 0.99061 0.91527 0.77002 0.89986 0.89974 0.75544 0.76700 0.89577 0.90041 0.89053 0.89202 0.76350 0.87702 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 13.05 55.50 0.72 -23.02 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.42 29.55 -169.99 -5.02 15.39 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.31 -8.24 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 16 10 C 0.43 9.68 7.85 -10.98 -0.09 9.59 16 11 O -0.60 -15.08 15.24 5.55 0.08 -15.00 16 12 C 0.13 2.33 6.15 -5.19 -0.03 2.30 16 13 N -0.72 -11.67 5.53 -66.41 -0.37 -12.04 16 14 C 0.71 10.76 8.56 -86.92 -0.74 10.02 16 15 O -0.60 -10.99 15.99 5.29 0.08 -10.90 16 16 N -0.74 -8.05 5.16 -57.06 -0.29 -8.35 16 17 C 0.17 1.54 3.22 -66.27 -0.21 1.32 16 18 H 0.11 1.14 7.55 -51.93 -0.39 0.75 16 19 C -0.13 -1.05 6.58 -24.74 -0.16 -1.21 16 20 C -0.15 -0.89 5.85 -25.07 -0.15 -1.04 16 21 C 0.10 0.66 0.83 -89.50 -0.07 0.58 16 22 O -0.52 -3.27 12.87 -35.23 -0.45 -3.72 16 23 C 0.42 3.25 2.20 37.16 0.08 3.33 16 24 F -0.17 -1.49 16.07 2.25 0.04 -1.45 16 25 F -0.18 -1.34 16.71 2.25 0.04 -1.31 16 26 F -0.18 -1.57 16.86 2.25 0.04 -1.53 16 27 C -0.12 -0.90 5.63 -25.61 -0.14 -1.05 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.40 9.36 7.90 -40.82 -0.32 9.04 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.41 6.38 7.45 -40.82 -0.30 6.08 16 33 H 0.40 3.47 8.38 -40.82 -0.34 3.12 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.40 8.07 -51.93 -0.42 -0.01 16 37 H 0.09 0.54 7.25 -51.93 -0.38 0.16 16 38 H 0.39 1.08 8.68 45.56 0.40 1.47 16 39 H 0.10 0.74 7.54 -51.93 -0.39 0.35 16 40 H 0.09 0.68 7.32 -51.93 -0.38 0.30 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -32.40 353.89 -5.35 -37.76 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -3.73 Total: 16.32 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: -1.76 Total: 16.04 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.00 Total: -56.94 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.28 Total: -29.62 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.11 Total: -4.29 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.40 -5.35 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589931166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.414 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds