Wall clock time and date at job start Tue Mar 31 2020 22:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00057 * 3 2 1 5 5 H 1.48496 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00050 * 3 2 1 7 7 C 1.38956 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00656 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47289 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00072 * 179.97438 * 13 12 10 15 15 O 1.21583 * 120.00212 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99868 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00109 * 180.02562 * 16 14 13 18 18 H 1.08997 * 110.43698 * 327.54245 * 17 16 14 19 19 C 1.54885 * 110.48640 * 90.22650 * 17 16 14 20 20 C 1.54886 * 102.75120 * 156.62259 * 19 17 16 21 21 C 1.54267 * 104.19476 * 322.05912 * 20 19 17 22 22 O 1.42904 * 110.07219 * 264.30182 * 21 20 19 23 23 C 1.53001 * 110.03744 * 142.89523 * 21 20 19 24 24 F 1.39902 * 109.46719 * 302.83552 * 23 21 20 25 25 F 1.39905 * 109.47002 * 62.82884 * 23 21 20 26 26 F 1.39896 * 109.47376 * 182.83434 * 23 21 20 27 27 C 1.53871 * 106.60098 * 23.60641 * 21 20 19 28 28 H 0.96996 * 120.00054 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 31 31 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 13 12 10 33 33 H 0.97006 * 119.99964 * 0.02562 * 16 14 13 34 34 H 1.09001 * 110.75897 * 274.93775 * 19 17 16 35 35 H 1.08997 * 110.75550 * 38.30775 * 19 17 16 36 36 H 1.09004 * 110.48889 * 203.38067 * 20 19 17 37 37 H 1.09001 * 110.60113 * 80.78642 * 20 19 17 38 38 H 0.96704 * 114.00242 * 297.19055 * 22 21 20 39 39 H 1.08995 * 110.03485 * 240.71876 * 27 21 20 40 40 H 1.09003 * 110.07707 * 119.30664 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2438 -4.8629 -0.0022 13 7 2.1958 -5.9765 -0.0027 14 6 1.7465 -7.2472 -0.0027 15 8 0.5511 -7.4693 -0.0019 16 7 2.6223 -8.2716 -0.0037 17 6 2.1340 -9.6528 -0.0043 18 1 1.1948 -9.7247 0.5442 19 6 1.9581 -10.1649 -1.4554 20 6 2.0499 -11.7020 -1.2890 21 6 3.1355 -11.9017 -0.2113 22 8 4.4010 -12.1445 -0.8292 23 6 2.7628 -13.0749 0.6973 24 9 1.5087 -12.8401 1.2711 25 9 2.7175 -14.2526 -0.0566 26 9 3.7212 -13.2048 1.7081 27 6 3.1891 -10.5988 0.6054 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 -0.0016 30 1 0.6174 -4.9205 -0.8924 31 1 0.6168 -4.9209 0.8876 32 1 3.1494 -5.7992 -0.0022 33 1 3.5760 -8.0943 -0.0040 34 1 0.9844 -9.8767 -1.8515 35 1 2.7606 -9.7970 -2.0948 36 1 2.3518 -12.1699 -2.2260 37 1 1.0969 -12.1087 -0.9502 38 1 4.4315 -12.9528 -1.3591 39 1 4.1800 -10.1512 0.5299 40 1 2.9499 -10.8015 1.6494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589931166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:59 Heat of formation + Delta-G solvation = -300.922469 kcal Electronic energy + Delta-G solvation = -29383.394038 eV Core-core repulsion = 24395.745440 eV Total energy + Delta-G solvation = -4987.648598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.22580 -48.72994 -48.69028 -41.39549 -40.34932 -39.70978 -36.86530 -36.19091 -35.24291 -34.16680 -33.34137 -30.38959 -29.91305 -28.50872 -26.38280 -25.49038 -22.60083 -21.82852 -21.71134 -21.32706 -20.14390 -19.86407 -19.62561 -19.37932 -19.21072 -17.76679 -17.44307 -17.08895 -16.75890 -16.61688 -16.27825 -15.88993 -15.61683 -15.51828 -15.45057 -15.38193 -15.12695 -15.08408 -14.93645 -14.84778 -14.79532 -14.16300 -13.92485 -13.79040 -13.66243 -13.52395 -13.07787 -12.89953 -12.88261 -12.68432 -12.45561 -12.27118 -12.12933 -11.79374 -11.54706 -11.40086 -11.35247 -10.53736 -10.39582 -10.08860 -9.82606 -8.49470 -5.99612 1.39334 1.43200 1.50197 1.54363 1.60420 1.91852 2.11594 2.29466 2.57283 2.57669 2.77233 3.01352 3.16760 3.17818 3.34936 3.40887 3.49289 4.03624 4.09650 4.15419 4.22247 4.26373 4.37286 4.46552 4.49170 4.67034 4.77783 4.87096 5.09058 5.11962 5.33174 5.40121 5.53102 5.92621 5.97026 6.41170 6.49824 7.03843 7.05004 7.44618 7.54991 7.96401 8.67160 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036836 B = 0.001795 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.936890 B =15599.242597 C =15785.939155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.724 5.724 14 C 0.707 3.293 15 O -0.628 6.628 16 N -0.724 5.724 17 C 0.160 3.840 18 H 0.088 0.912 19 C -0.126 4.126 20 C -0.141 4.141 21 C 0.108 3.892 22 O -0.530 6.530 23 C 0.424 3.576 24 F -0.181 7.181 25 F -0.181 7.181 26 F -0.184 7.184 27 C -0.118 4.118 28 H 0.280 0.720 29 H 0.399 0.601 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.410 0.590 33 H 0.411 0.589 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.403 0.597 39 H 0.112 0.888 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 -27.479 -2.002 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.381 5.381 14 C 0.406 3.594 15 O -0.510 6.510 16 N -0.380 5.380 17 C 0.055 3.945 18 H 0.107 0.893 19 C -0.165 4.165 20 C -0.179 4.179 21 C 0.064 3.936 22 O -0.340 6.340 23 C 0.369 3.631 24 F -0.162 7.162 25 F -0.162 7.162 26 F -0.165 7.165 27 C -0.156 4.156 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.248 0.752 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.255 0.745 39 H 0.131 0.869 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.745 -26.980 -1.674 27.445 hybrid contribution 0.297 0.282 0.067 0.415 sum 5.042 -26.698 -1.607 27.217 Atomic orbital electron populations 1.69673 1.06987 1.29672 1.49276 1.26133 0.96549 1.02695 0.95849 0.84927 0.77704 0.76260 0.79094 1.19467 1.19716 1.19515 1.19695 0.92965 0.83549 1.50421 0.89545 1.41835 1.09609 1.04604 1.63502 1.20438 0.88123 0.85924 0.83440 1.90466 1.15182 1.87564 1.57995 1.20580 0.90986 0.83021 1.04071 1.44692 1.11030 1.03276 1.79152 1.15913 0.85165 0.80738 0.77557 1.90888 1.15559 1.84619 1.59901 1.44949 1.09296 1.04192 1.79591 1.21650 0.97210 0.78655 0.97015 0.89349 1.22833 1.03315 0.93973 0.96375 1.23073 0.98136 0.97640 0.99008 1.22829 0.87641 0.90704 0.92438 1.86698 1.29671 1.49317 1.68268 1.21735 0.74760 0.85518 0.81054 1.93201 1.42706 1.94376 1.85934 1.93183 1.96163 1.51181 1.75694 1.93197 1.64136 1.96375 1.62842 1.22389 1.02121 0.91954 0.99145 0.91089 0.76688 0.88984 0.89065 0.75193 0.75196 0.90899 0.89691 0.86821 0.89077 0.74497 0.86950 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.44 13.05 21.66 0.28 -48.16 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 1.00 41.47 29.55 68.60 2.03 43.50 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.34 -18.41 9.68 84.04 0.81 -17.59 16 8 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 9 N -0.56 -27.84 5.29 -306.99 -1.62 -29.46 16 10 C 0.43 19.69 7.85 87.66 0.69 20.37 16 11 O -0.62 -31.64 15.24 -3.05 -0.05 -31.69 16 12 C 0.14 5.09 6.15 85.63 0.53 5.62 16 13 N -0.72 -22.85 5.53 -482.28 -2.67 -25.51 16 14 C 0.71 21.02 8.56 179.06 1.53 22.55 16 15 O -0.63 -22.94 15.99 -3.98 -0.06 -23.00 16 16 N -0.72 -14.92 5.16 -452.69 -2.34 -17.26 16 17 C 0.16 2.81 3.22 46.07 0.15 2.96 16 18 H 0.09 1.90 7.55 -2.39 -0.02 1.88 16 19 C -0.13 -1.86 6.58 31.88 0.21 -1.65 16 20 C -0.14 -1.41 5.85 31.67 0.19 -1.22 16 21 C 0.11 1.23 0.83 -10.07 -0.01 1.22 16 22 O -0.53 -5.25 12.87 -148.98 -1.92 -7.17 16 23 C 0.42 5.83 2.20 71.98 0.16 5.99 16 24 F -0.18 -2.91 16.07 44.97 0.72 -2.19 16 25 F -0.18 -2.30 16.71 44.97 0.75 -1.55 16 26 F -0.18 -3.05 16.86 44.97 0.76 -2.29 16 27 C -0.12 -1.57 5.63 31.32 0.18 -1.40 16 28 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 29 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 30 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 32 H 0.41 12.56 7.45 -92.71 -0.69 11.87 16 33 H 0.41 6.49 8.38 -92.70 -0.78 5.72 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.11 0.66 8.07 -2.39 -0.02 0.64 16 37 H 0.09 0.93 7.25 -2.39 -0.02 0.91 16 38 H 0.40 1.11 8.68 -74.05 -0.64 0.46 16 39 H 0.11 1.35 7.54 -2.39 -0.02 1.34 16 40 H 0.09 1.25 7.32 -2.39 -0.02 1.24 16 Total: -1.00 -68.74 353.89 -0.89 -69.63 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -1.68 Total: 38.43 kcal Atomic # 6 Polarization: 31.81 SS G_CDS: 4.90 Total: 36.71 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -6.35 Total: -120.40 kcal Atomic # 8 Polarization: -59.83 SS G_CDS: -2.03 Total: -61.85 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 2.23 Total: -6.03 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -68.74 -0.89 -69.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589931166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -231.289 kcal (2) G-P(sol) polarization free energy of solvation -68.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -300.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -300.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds